sf-mx/crystfel_tools
0
1
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

added nograd and changed int-radius

Browse Source
This commit is contained in:
Beale John Henry
2023-11-03 08:46:42 +01:00
parent d5368b1004
commit 015a8817db
1 changed files with 6 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

12
reduction_tools/crystfel_run.sh
View File

@@ -3,17 +3,17 @@
module purge module purge
module load crystfel/0.10.2 module load crystfel/0.10.2
indexamajig -i <path-to-images> \ # change this indexamajig -i <path-to-images> \
-o <output.steam> \ # change this -o <output.steam> \
--geometry=<path-to-geom> \ # change this --geometry=<path-to-geom> \
--pdb=<path-to-cell> \ # change this --pdb=<path-to-cell> \
--indexing=xgandalf-latt-cell \ --indexing=xgandalf-latt-cell \
--peaks=peakfinder8 \ --peaks=peakfinder8 \
--integration=rings-grad \ --integration=rings-nograd \
--tolerance=10.0,10.0,10.0,2,3,2 \ --tolerance=10.0,10.0,10.0,2,3,2 \
--threshold=10 \ --threshold=10 \
--min-snr=5 \ --min-snr=5 \
--int-radius=3,5,9 \ --int-radius=5,5,9 \
-j 32 \ -j 32 \
--no-multi \ --no-multi \
--no-retry \ --no-retry \