From 015a8817db3b54b77728f2b2ddf06d5d1ee9ff3c Mon Sep 17 00:00:00 2001
From: Beale John Henry <beale_j@saresc-cons-03.psi.ch>
Date: Fri, 3 Nov 2023 08:46:42 +0100
Subject: [PATCH] added nograd and changed int-radius

---
 reduction_tools/crystfel_run.sh | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/reduction_tools/crystfel_run.sh b/reduction_tools/crystfel_run.sh
index 32417b4..ebf1f5c 100644
--- a/reduction_tools/crystfel_run.sh
+++ b/reduction_tools/crystfel_run.sh
@@ -3,17 +3,17 @@
 module purge
 module load crystfel/0.10.2
 
-indexamajig -i <path-to-images> \ # change this
-  -o <output.steam> \ # change this
-  --geometry=<path-to-geom> \ # change this
-  --pdb=<path-to-cell> \ # change this
+indexamajig -i <path-to-images> \
+  -o <output.steam> \
+  --geometry=<path-to-geom> \
+  --pdb=<path-to-cell> \
   --indexing=xgandalf-latt-cell \
   --peaks=peakfinder8 \
-  --integration=rings-grad \
+  --integration=rings-nograd \
   --tolerance=10.0,10.0,10.0,2,3,2 \
   --threshold=10 \
   --min-snr=5 \
-  --int-radius=3,5,9 \
+  --int-radius=5,5,9 \
   -j 32 \
   --no-multi \
   --no-retry \