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abae2288e7
|
Final cleanup
|
2025-07-15 08:50:35 +02:00 |
|
|
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118b97acfb
|
Restore mask ROI fuctionality; Concentric streaks filter in a function; Cleanup
|
2025-07-15 08:35:08 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
ad0752aa92
|
Correct region mask
|
2025-07-14 23:35:26 +02:00 |
|
|
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b2cc1e27a4
|
TEST: crop data AND mask
|
2025-07-14 23:10:46 +02:00 |
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d30adf3e14
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TEST: try return crop roi; cleanup
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2025-07-14 23:04:17 +02:00 |
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9ed3335021
|
TEST: use median method for whitefield scale
|
2025-07-14 22:44:03 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
90c0b9cf3d
|
No newaxis, still extremely slow method for white field scale; TODO: use median instead
|
2025-07-14 22:42:05 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
f1828cb4b5
|
True divide
|
2025-07-14 22:26:58 +02:00 |
|
|
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77d3ff9293
|
TEST scale whitefield
|
2025-07-14 22:07:08 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
e3efd82b2c
|
Bugfixes, no leak visible, TODO: cleanup, wf norm, crop, maybe mask roi
|
2025-07-14 21:25:59 +02:00 |
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901587db79
|
TEST: try to get rid of data containers in streak finder package; make it simple
|
2025-07-14 20:58:20 +02:00 |
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|
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2ea2129d5b
|
Try to get rid of cryst data entirely
|
2025-07-14 19:40:28 +02:00 |
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|
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6ebaf0ae6a
|
Try cleanup cryst data, track memory usage
|
2025-07-14 19:29:29 +02:00 |
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c09bdc5b4e
|
Explicitly delete cryst_data object after algorithm completion
|
2025-07-14 19:09:52 +02:00 |
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|
|
8ffad86f9a
|
Use bool rather than np.bool to avoid deprecation errors
|
2025-07-14 18:59:27 +02:00 |
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|
|
23983ddd6f
|
Merge pull request 'Streak Finder algorithm for CBD experiment' (#2) from ext-dorofe_e/dap:chapman into main
Reviewed-on: ext-dorofe_e/dap#1
Merged here: #2
|
2025-07-14 11:18:06 +02:00 |
|
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1d88f33cf3
|
Replace sf_ prefix with cbd_ for streak finder params; We are at SwissFell after all
|
2025-07-11 15:29:51 +02:00 |
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193f531d5c
|
Correct setting name for mask form file dataset; prepend all strak-finder-specific settings names with sf; Make streak-finder mask optional now that we have mask from file
|
2025-07-11 14:57:20 +02:00 |
|
|
|
4eb4bb76dc
|
Ensure single read and no copy for hdf5 data
|
2025-07-11 14:47:20 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
7169ce5acb
|
We know that detected streaks are list, use np.array
|
2025-07-11 11:22:45 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
e3e701a4da
|
Masking negative values for streak finder should be reflected in mask, not in data
|
2025-07-11 11:09:17 +02:00 |
|
|
|
d8e38df39a
|
Option to read additional mask from file; Applied on startup only
|
2025-07-11 10:16:05 +02:00 |
|
|
|
e756b70655
|
Credits
|
2025-07-11 08:57:24 +02:00 |
|
|
|
2b17a8bd3a
|
Configurable negative values handler for streak finder
|
2025-07-11 08:53:18 +02:00 |
|
|
|
b6df4986de
|
Further simplify, get rid of redundant brackets
|
2025-07-11 08:19:10 +02:00 |
|
|
|
1ef801c37e
|
Add parameter sf_min_hit_streaks to streak finder - Minimum number of discovered streaks to categorize frame as a hit
|
2025-07-11 08:11:42 +02:00 |
|
|
|
c5ba140c71
|
Format import
|
2025-07-11 08:08:22 +02:00 |
|
|
|
152b2342d7
|
Simplify results dictionary updates in streak finder
|
2025-07-11 08:06:29 +02:00 |
|
|
|
6f2fa2d419
|
Merge branch 'chapman' of https://gitea.psi.ch/ext-dorofe_e/dap into chapman
|
2025-07-11 07:59:27 +02:00 |
|
|
|
094371a63b
|
Simplify converting frame to stack for CrystData
|
2025-07-11 07:59:19 +02:00 |
|
|
|
626f324eff
|
Merge branch 'main' into chapman
|
2025-07-10 18:52:10 +02:00 |
|
|
|
a304ff1d9d
|
Added crop roi to readme
|
2025-07-10 10:33:38 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
2bd3e875e3
|
Bug fix in streaks coordintaes shift
|
2025-07-10 10:26:38 +02:00 |
|
|
|
b3ec993f2f
|
Swap x/t for crop roi for cryst data
|
2025-07-10 10:08:37 +02:00 |
|
|
|
84b6ef3c52
|
For concentric streaks detection, take into account crop region shift
|
2025-07-10 10:07:19 +02:00 |
|
|
|
ea28335ae0
|
For final streak finder result, take into account crop region shift
|
2025-07-10 09:33:36 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
969ac8ffcf
|
First step towards running algorithm on cropped image
|
2025-07-10 09:26:17 +02:00 |
|
|
|
da8141b687
|
convert numpy bool_ scalar to python bool
|
2025-07-08 18:58:47 +02:00 |
|
|
|
9bfe0cc8c5
|
changed gitlab -> gitea
|
2025-07-08 16:05:15 +02:00 |
|
|
|
7d5a0f7ad8
|
disable deprecated APIs in NumPy (from before version 1.7) to silence warning
|
2025-07-08 15:52:37 +02:00 |
|
|
|
157b7bad8c
|
typo
|
2025-07-08 11:36:03 +02:00 |
|
|
|
e984b336a0
|
SPI v2
|
2025-07-08 08:54:35 +02:00 |
|
|
|
d9ef09a69e
|
Clean up debug prints; minor cleanup in README
|
2025-07-07 10:05:29 +02:00 |
|
|
|
8e4301c443
|
Update README with details of streak finder input and output parameters as well as example settings json
|
2025-07-07 09:56:25 +02:00 |
|
|
|
76b8d957dd
|
Code cleanup; TODO: update README
|
2025-07-07 09:28:41 +02:00 |
|
|
|
00024ffd5d
|
Merge branch 'chapman' of https://gitea.psi.ch/ext-dorofe_e/dap into chapman
|
2025-07-07 09:03:20 +02:00 |
|
|
|
c6d10b2fae
|
Bugfixes, add mask rois to streak finder; Allows masking out bad rois or a part of sensor to speed up
|
2025-07-07 09:00:57 +02:00 |
|
Dorofeeva Elizaveta (EXT)
|
ca6ef2453a
|
Bug fix in streak finder; TODO: mask from file is not refreshed on file change
|
2025-07-04 11:57:08 +02:00 |
|
|
|
ff532af0d6
|
Chane image in-place if snr selected; Use concentric mask
|
2025-07-04 11:14:32 +02:00 |
|
|
|
2e066ef3a7
|
Have mask and whitefield also available as it was outside of streak finder
|
2025-07-04 10:55:04 +02:00 |
|
