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Script execution

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gobbo_a
2019-10-30 16:54:58 +01:00
parent 581bb6bcfb
commit 1cf785b4f1
1 changed files with 7 additions and 1 deletions
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8
script/utils.py
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@@ -1,3 +1,5 @@
import ij
from ij.io import Opener
from ijutils import *
from ch.psi.pshell.imaging.Overlays import *
from ch.psi.pshell.imaging.Utils import *
@@ -43,11 +45,15 @@ def integrate_frames(source, samples=1, roi=None, wait_next=False, sleep=0, as_f
def get_image_array(ip):
if type(av.getProcessor()) == ij.process.FloatProcessor:
if type(ip.getProcessor()) == ij.process.FloatProcessor:
return ip.getProcessor().getFloatArray()
else:
return ip.getProcessor().getIntArray()
def open_image(file_name)
file_name = get_context().setup.expandPath(file_name)
return Opener().openTiff(file_name, 1)
ret = grab_frames(image, 10, sleep=0.1)
av = average(ret, None, True)