From 1cf785b4f154753b1b22395d7451c1e8f5d9003d Mon Sep 17 00:00:00 2001 From: Alexandre Gobbo Date: Wed, 30 Oct 2019 16:54:58 +0100 Subject: [PATCH] Script execution --- script/utils.py | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/script/utils.py b/script/utils.py index 6b137c7..cc94fdd 100644 --- a/script/utils.py +++ b/script/utils.py @@ -1,3 +1,5 @@ +import ij +from ij.io import Opener from ijutils import * from ch.psi.pshell.imaging.Overlays import * from ch.psi.pshell.imaging.Utils import * @@ -43,11 +45,15 @@ def integrate_frames(source, samples=1, roi=None, wait_next=False, sleep=0, as_f def get_image_array(ip): - if type(av.getProcessor()) == ij.process.FloatProcessor: + if type(ip.getProcessor()) == ij.process.FloatProcessor: return ip.getProcessor().getFloatArray() else: return ip.getProcessor().getIntArray() +def open_image(file_name) + file_name = get_context().setup.expandPath(file_name) + return Opener().openTiff(file_name, 1) + ret = grab_frames(image, 10, sleep=0.1) av = average(ret, None, True)