606f3cacaa
Add MotionCor2 build script
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Installation is highly manual. This documents the MotionCor2
installation procedure and automates shared file installation.
Adds 1.2.6 and 1.3.0 variants.
2019-12-03 17:14:37 +01:00
0e8e4e9e68
Merge branch '65-update-anaconda-envs-for-xlrd-jupytext-conda-build' into 'master'
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Resolve "update anaconda envs for xlrd, jupytext, conda-build"
Closes #65
See merge request Pmodules/buildblocks!79
2019-11-07 15:31:24 +01:00
03cc1e648c
adding xlrd to anaconda envs for pandas/excel compatibility
2019-11-07 11:19:35 +01:00
083a95b3af
added conda-build to anaconda hpce-tools
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We should be able to build our own anaconda packages in a centrally
provided environment.
2019-11-07 11:19:32 +01:00
4810bd4c7b
added bayesian-optimization package to anaconda datascience_p37 env
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on mail request by virginie.solans@psi.ch
2019-11-07 11:19:31 +01:00
f000f49893
added plotly and graphviz to anaconda datascience environments
2019-11-07 11:19:30 +01:00
7f3cee67da
added jupytest plugin for jupyterhub
2019-11-07 11:19:29 +01:00
81381c98df
Merge branch '64-dks-new-variants-for-1-1-2' into 'master'
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Resolve "dks: new variants for 1.1.2"
Closes #64
See merge request Pmodules/buildblocks!78
2019-11-05 17:24:37 +01:00
400b226fb7
dks: variants.rhel6 cleanup
2019-11-05 17:24:55 +01:00
46f8ea5775
dks: variants for 1.1.2 added
2019-11-05 17:22:52 +01:00
831a187741
Merge branch '63-boost-build-1-70-0-with-gcc-7-4-0-openmpi-3-1-4' into 'master'
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Resolve "boost: build 1.70.0 with gcc/7.4.0 openmpi/3.1.4"
Closes #63
See merge request Pmodules/buildblocks!77
2019-11-05 17:14:55 +01:00
a08569a2be
boost: variant for 1.70.0 with gcc/7.4.0 openmpi/3.1.4 added
2019-11-05 17:15:21 +01:00
38beb4b420
Merge branch '62-boost-release-1-70-0-with-gcc-7-3-0-openmpi-3-1-3-as-stable' into 'master'
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Resolve "boost: release 1.70.0 with gcc/7.3.0, openmpi/3.1.3 as stable"
Closes #62
See merge request Pmodules/buildblocks!76
2019-11-05 17:08:09 +01:00
99c5fa3b7c
boost: 1.70.0 with gcc/7.3.0, openmpi/3.1.3 released as stable
2019-11-05 17:06:26 +01:00
60531ebb42
Merge branch '61-amex-release-modules-as-stable' into 'master'
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Resolve "amex: release modules as stable"
Closes #61
See merge request Pmodules/buildblocks!75
2019-11-05 16:51:33 +01:00
303f1f18f7
amrex: cleanup release states
2019-11-05 16:52:06 +01:00
b12485cc2f
Merge branch '60-amex-build-18-07_-2-3-d-with-gcc-7-4-0-and-openmpi-3-1-4' into 'master'
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Resolve "amex: build 18.07_{2,3}d with gcc/7.4.0 and openmpi/3.1.4"
Closes #60
See merge request Pmodules/buildblocks!74
2019-11-05 16:47:56 +01:00
86c8b60be4
amrex: variants for 18.07_{2,3}d with gcc/7.4.0 and openmpi/3.1.4 added
2019-11-05 16:47:29 +01:00
5aff191839
Merge branch '59-openmpi-cleanup-variants-files' into 'master'
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Resolve "openmpi: cleanup variants files"
Closes #59
See merge request Pmodules/buildblocks!73
2019-11-05 16:29:33 +01:00
b42387e900
openmpi: variants file for merlin6 added
2019-11-05 16:29:48 +01:00
e38397e11d
openmpi: variants file for Linux renamed to variants.rhel6, cleanup, merlin specific stuff removed
2019-11-05 16:29:03 +01:00
b3f8d27702
Merge branch '58-openmpi-bugfixes-in-build-script' into 'master'
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Resolve "openmpi: bugfixes in build-script"
Closes #58
See merge request Pmodules/buildblocks!72
2019-11-05 16:19:52 +01:00
a089d9a44f
openmpi: use libuc[mpst] from module if not available on system
2019-11-05 16:19:21 +01:00
2c72327241
openmpi: bugfixs in build script
2019-11-05 16:17:21 +01:00
f88f30cf4e
Merge branch 'anaconda' into 'master'
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Update anaconda buildblock to latest deployment
See merge request Pmodules/buildblocks!65
2019-11-05 15:48:03 +01:00
c165270914
Check in older anaconda versions.
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Version 2019.03 was an alpha version but got deployed. This updates it
to use the current modulefile.
2019-11-05 15:48:03 +01:00
186d4b6572
Merge branch 'relion' into 'master'
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Add relion build script.
See merge request Pmodules/buildblocks!64
2019-11-05 15:47:53 +01:00
45310b1c21
Merge branch '57-gsl-build-version-2-6-with-current-gcc-versions' into 'master'
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Resolve "gsl: build version 2.6 with current gcc versions"
Closes #57
See merge request Pmodules/buildblocks!71
2019-11-05 15:18:36 +01:00
9c9f645981
gsl: 2.6 with gcc/{7.4.0,8.3.0,9.1.0,9.2.0} added
2019-11-05 15:18:30 +01:00
945879e791
Merge branch '56-openblas-new-variants-for-version-0-3-7' into 'master'
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Resolve "OpenBLAS: new variants for version 0.3.7"
Closes #56
See merge request Pmodules/buildblocks!70
2019-11-05 14:51:34 +01:00
0c409a7a96
OpenBLAS: version 0.3.7 with gcc/{7.4.0,8.3.0,9.2.0} added
2019-11-05 11:22:20 +01:00
17171b1b93
OpenBLAS: fix in post-install
2019-11-05 11:21:41 +01:00
e8cd9a3b3e
OpenBLAS: variants file for macOS 10.14 added
2019-11-05 10:50:42 +01:00
093f70e947
Merge branch '55-gtest-build-new-variants-for-1-8-1-with-gcc-5-5-0-6-4-0-7-4-0-8-3-0-9-2-0' into 'master'
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Resolve "gtest: build new variants for 1.8.1 with gcc/{5.5.0,6.4.0,7.4.0,8.3.0,9.2.0}"
Closes #55
See merge request Pmodules/buildblocks!69
2019-11-04 17:34:59 +01:00
bd58d5991e
gtest: variants file for macOS 10.14 added
2019-11-04 17:34:17 +01:00
d7495479e9
gtest: variants for version 1.8.1 with gcc/{5.5.0,6.4.0,7.4.0,8.3.0,9.2.0} added
2019-11-04 17:33:34 +01:00
53586401e8
gtest: support for version 1.8.1 added
2019-11-04 17:32:34 +01:00
2f67d0fef7
Merge branch '54-isl-new-build-block' into 'master'
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Resolve "isl: new build-block"
Closes #54
See merge request Pmodules/buildblocks!68
2019-11-04 17:16:15 +01:00
9db7388632
isl/0.21: released as stable
2019-11-04 17:16:01 +01:00
c4e7a41e1f
isl: new build-block added
2019-11-04 17:15:28 +01:00
f71a0d4528
Merge branch '53-gcc-9-2-0-build-new-version' into 'master'
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Resolve "gcc/9.2.0: build new version"
Closes #53
See merge request Pmodules/buildblocks!67
2019-11-04 16:57:51 +01:00
6041025cee
gcc: version 9.2.0 released as stable
2019-11-04 16:57:28 +01:00
254b01dc19
gcc: build 9.2.0 with libisl
2019-11-04 16:51:57 +01:00
6ca141f29d
gcc: do not build in source tree, cleanup
2019-11-04 16:50:09 +01:00
edba6f5d0c
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks
2019-11-04 15:36:00 +01:00
78c106599c
issue templates reviewed
2019-11-04 15:35:09 +01:00
8190b0a6c2
Add Relion README.md
2019-10-24 16:14:33 +02:00
b5a0300933
Add relion build script.
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Builds from source based on git.
Currently only gcc/7.4.0 is used. Better performance is reported with
intel icc and MKL, but this would require additional openmpi variants.
Variants for 3.0.8 and 3.1-beta (780dd7b) are installed.
2019-10-24 16:03:36 +02:00
b0472c9320
Merge branch 'fftw' into 'master'
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Deploy fftw/3.3.8-1
See merge request Pmodules/buildblocks!33
2019-09-26 16:32:27 +02:00
5039cb6118
Merge branch 'gromacs_gpu' into 'master'
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Gromacs gpu
See merge request Pmodules/buildblocks!32
2019-09-26 13:29:25 +02:00
