leonarski_fandClaude Opus 4.8
f261adf42a
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New offline tool that re-compresses /entry/data/data of a _data_NNNNNN.h5 file from bitshuffle/LZ4 to the standard bitshuffle/Zstd HDF5 filter. Every other object (groups, datasets, attributes, the dataset's own attributes, dims/dtype/chunking/block size) is reproduced unchanged. It writes a fresh file - only /entry/data/data is re-encoded, every other object is H5Ocopy'd verbatim - which then atomically replaces the original via rename(). This needs no h5repack (the new file has no leftover space) and is crash-safe (the original is opened read-only until the rename). Frames are streamed one at a time through the registered bitshuffle filter (decompress LZ4, compress Zstd), so it is dtype-agnostic and never holds the whole dataset in memory. Output is read by the standard bitshuffle+zstd HDF5 plugin (verified against the hdf5plugin/DIALS libh5bshuf.so, which links libzstd and supports the zstd mode). Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.