leonarski_fandClaude Opus 4.8 f0dc61ef58 rugnux: write refined geometry (beam, tilt, axis) to _process.h5
The master-file geometry is written from the StartMessage at file open, before
indexing/refinement - the file is streamed per image, so it cannot wait for the
refined values. rugnux therefore stored the nominal beam centre / detector tilt /
rotation axis, not the geometry its own refinement found (jfjoch_broker, by
contrast, deliberately keeps the user-provided values).

Add optional refined geometry to EndMessage; at finalization the writer overwrites
the beam_center_x/y, PONI rot1/2/3 and rotation-axis datasets in place with these.
The broker leaves them empty, so its output is unchanged.

For EcwtCQ244-E3 the _process.h5 now reports the refined beam 761.6/847.7 (nominal
764/850, matching XDS's 760.2) plus the refined tilt and rotation axis.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
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