leonarski_fandClaude Opus 4.8
dfc6703f4a
SmoothImageScaleG rewrites the partials in place (image_scale_corr and image_scale_g). On the no-reference path that is harmless: each scaling pass recomputes G from scratch via ScaleAllImages, so smoothing always runs on freshly-refined G. On the reference path the scaling loop is skipped, so G is computed once and stays; running scale_and_merge twice (P1 then the adopted space group) smoothed the already-smoothed G a second time, compounding into a ~2x wider effective kernel than the configured --smooth-g and biasing the merged intensities. Smooth only on the first pass of the reference path (G is unchanged afterwards, and the smoothed partials persist into the second pass's combine3D). The no-reference path is unchanged. Verified on lyso (600 frames, -P rot3d -z ref.mtz -M): the reference run now logs the smoothing once instead of twice, and the merged MTZ changes. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.