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leonarski_fandClaude Opus 5.5 df44edf9ee rugnux: gather the scaffold's shared helpers into one rugnux_internal block

Now that every helper used by a single phase has moved to that phase's file, the helpers left in
Rugnux.cpp's alternating anonymous and rugnux_internal blocks fit in one of each. Definitions are
reordered only; nothing else changes.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01SVmAWnzCmRKAXVUCdc4iNi

2026-10-07 16:01:03 +02:00

.gitea/workflows

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

common

rugnux: remove the beam-centre ladder (--beam-center-search)

2026-10-07 12:35:40 +02:00

compression

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

detector_control

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

frame_serialize

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

frontend

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

gemmi_gph

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

image_analysis

Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/

2026-10-07 14:05:37 +02:00

image_puller

v1.0.0-rc.169 (#79 )

2026-09-15 17:09:31 +02:00

image_pusher

v1.0.0-rc.165 (#75 )

2026-08-27 22:16:54 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

v1.0.0-rc.169 (#79 )

2026-09-15 17:09:31 +02:00

preview

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

reader

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

receiver

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

rugnux

rugnux: gather the scaffold's shared helpers into one rugnux_internal block

2026-10-07 16:01:03 +02:00

tests

Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/

2026-10-07 14:05:37 +02:00

tools

rugnux: the terminal shows numbered steps with timing; the full log goes to <prefix>_log.txt

2026-10-07 12:11:21 +02:00

viewer

rugnux: remove --estimate-beam-center and the spot-symmetry beam-centre estimator

2026-10-07 12:35:40 +02:00

writer

Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/

2026-10-07 14:05:37 +02:00

xds-plugin

v1.0.0-rc.169 (#79 )

2026-09-15 17:09:31 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

CMakeLists.txt

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

rugnux_anomalous.py

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

rugnux_stills_ab.py

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

stills_datasets.tsv

v1.0.0-rc.164 (#74 )

2026-08-26 22:47:00 +02:00

THIRD_PARTY_NOTICES.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

update_version.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

VERSION

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.