leonarski_fandClaude Opus 5 bddbec7aff rugnux: measure the canonical pass's geometry probe before the scaling engine is built
The post-refinement probe on a canonical pass only measures, and it reads nothing the scaling
engine produces - the reflections' hkl, I, sigma and positions are final once the images are
integrated, and the engine writes back per-frame fields only. It ran after the first merge,
beside the engine's arrays, where its gathered observations and rocking events set the pass's
memory high-water mark. Run it before the engine is built instead; the pre-pass keeps its
original place (it consumes the smoothed mosaicity the merge writes back).

Measured on a 3600-frame long-axis rotation set: the canonical pass's high-water drops from
14.8 GB to under 12.8 GB (sampled RSS, -N 6); merged MTZ/HKL/CIF, P1 MTZ, per-image table and the
report are byte-identical, the probe's own result included.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_013nW6FNRP1bBJJ8pfHiByAT
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System, Rugnux Data Processing Application, and Diffraction Viewer
Readme GPL-3.0
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