leonarski_fandClaude Opus 5
a7a3c2a00c
- Site config: site.example.json is committed; the local site.json (git-ignored) or $JFJOCH_BATTERY_SITE / --site names this machine's paths and the private manifest. Data roots are the arms' own directories, so copying them and editing the site config moves the battery. - Run states: manifest records the runner's pid; a run is complete, running, aborted (Ctrl-C/SIGTERM, or `abort RUN`) or unfinished. compare and report refuse a run that did not finish unless --allow-incomplete, and the report says so. - `list` shows runs and their state; `run` defaults its label to the rugnux version and its baseline to the site's persisted one; a baseline must be complete and of the same privacy as the run; a private report cannot be written into the repo. - XDS reference d_min: when the finest shell of XDS's table has no significant CC1/2, XDS merged past its own signal (no resolution cut, or a cut at the detector edge) and its limit is the detector's reach. The reference is then where XDS's CC1/2 falls through 0.30 (rugnux's own target), and that is also the range forced on rugnux. The manifest keeps XDS's limit (dmin_xds) and the rule (dmin_rule). Forcing the old 1.08 A on the weak insulin set turned rugnux's I23 into I222 (ISa 12.5); forced at the derived 1.81 A it is I23 again (ISa 18.0). Changed in the inhouse arm: insu_I_weak 1.08 -> 1.81, lyso_half_image 0.80 -> 2.60, cytc_eiger 2.04 -> 2.27, lyso_strong 1.18 -> 1.24; every other inhouse limit stands. - inhouse.json follows the directory rename (ids and inputs, data root /home/data/inhouse); `remap` applies such a rename and keeps the old ids as aliases, so runs from before it still compare set by set. - Optional open-arm model check (model_check.py, when present): R-free of the deposited model against each merge, recorded and plotted. - results.json has a fixed, documented row schema (results_schema 1); the HTML report gains inline-SVG plots (verdicts per arm, d_min and R-free ratios per set). - README.md: arms, data layout and provenance, prerequisites, running, run directory, results schema, report, comparing, protocol, adding datasets. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.