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leonarski_fandClaude Opus 5 7f72c2f622 rugnux: two usage-message lines caught up with the behaviour 
--fft-min-unit-cell claimed a crystal below the 10 A floor cannot be
indexed at all; since the default-on short-axis second hypothesis it
can, so the line says so. --model promised 2Fo-Fc/Fo-Fc maps; the maps
have been sigma_A-weighted 2mFo-DFc/mFo-DFc since the rigid-body work,
and the placed model is written beside them.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
2026-09-02 15:48:14 +02:00
.gitea/workflows
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
acquisition_device
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
broker
grid scan: say how the stationary spindle angle is stated, and pin it
2026-09-02 11:04:29 +02:00
common
review fixes: the calibration accept test, a NaN warning, and two grid defects
2026-09-02 15:20:49 +02:00
compression
compression: read plain LZ4 (HDF5 filter 32004), and name the filter when one is unsupported
2026-08-28 21:56:12 +02:00
detector_control
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
docker
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
docs
docs: audit of the rugnux and analysis pages against the code
2026-09-02 15:48:14 +02:00
etc
Spot finding: bound how large a spot may be, not how bright
2026-08-28 11:49:49 +02:00
fpga
release: 1.0.0-rc.166
2026-08-31 09:11:22 +02:00
frame_serialize
api: record the beam size at the sample, and write it where NXmx puts it
2026-09-02 09:59:34 +02:00
frontend
grid scan: say how the stationary spindle angle is stated, and pin it
2026-09-02 11:04:29 +02:00
gemmi_gph
model validation: write the model as it was placed
2026-09-02 14:47:38 +02:00
image_analysis
docs: worked Phaser and SHELX routes, and the MTZ base dataset they need
2026-09-02 13:07:03 +02:00
image_puller
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
image_pusher
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
include
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
jungfrau
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
licenses
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
lyso_test
v1.0.0-rc.160 (#70)
2026-07-19 09:39:28 +02:00
preview
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
reader
api: record the beam size at the sample, and write it where NXmx puts it
2026-09-02 09:59:34 +02:00
receiver
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
rugnux
rugnux: two usage-message lines caught up with the behaviour
2026-09-02 15:48:14 +02:00
tests
tests: the merged MTZ's base dataset, which nothing covered
2026-09-02 14:48:48 +02:00
tools
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
viewer
viewer: label the merge plot over the range it is drawn on
2026-09-02 09:23:02 +02:00
writer
review fixes: the calibration accept test, a NaN warning, and two grid defects
2026-09-02 15:20:49 +02:00
xds-plugin
v1.0.0-rc.149 (#59)
2026-06-13 21:27:41 +02:00
.gitattributes
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
.gitignore
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
.readthedocs.yaml
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
CLAUDE.md
docs: write down the three directions this work is heading in
2026-08-30 14:06:54 +02:00
CMakeLists.txt
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
CONTRIBUTING.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
gen_python_client.sh
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
gitea_create_release.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitea_upload_file.py
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
LICENSE
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
make_doc.sh
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
README.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
rugnux_anomalous.py
v1.0.0.rc-162 (#72)
2026-08-25 08:21:39 +02:00
rugnux_stills_ab.py
rugnux: write the unmerged MTZ by default
2026-08-30 10:51:25 +02:00
rugnux_vs_xds.py
rugnux: write the unmerged MTZ by default
2026-08-30 10:51:25 +02:00
stills_datasets.tsv
v1.0.0-rc.164 (#74)
2026-08-26 22:47:00 +02:00
THIRD_PARTY_NOTICES.md
v1.0.0-rc.165 (#75)
2026-08-27 22:16:54 +02:00
update_version.sh
v1.0.0.rc-161 (#71)
2026-08-13 17:03:10 +02:00
VERSION
release: 1.0.0-rc.166
2026-08-31 09:11:22 +02:00

README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Jungfraujoch Data Acquisition System
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