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leonarski_fandClaude Opus 4.8 7bb25979e6 docs: correct CPU_DATA_ANALYSIS integration section (profile-fit, not summation) 
The default 2D Bragg integrator is ProfileIntegrate2D (Kabsch profile fit with a
per-resolution-shell Gaussian profile and de-biased variance), with box summation
as the seed/fallback (--integrator boxsum|gaussian|empirical). Section 9 and the
section 13 note both still claimed integration was summation-only with no profile
fitting; rewrite them to describe the profile-fit default.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-06-28 11:16:00 +02:00
.gitea/workflows
CI: Build all on Windows (not only jfjoch_viewer target)
2026-06-26 18:27:33 +02:00
acquisition_device
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
broker
Regenerate OpenAPI clients for bszstd_rlehuf compression value
2026-06-27 14:52:12 +02:00
common
rot3d: capture-aware sigma for under-captured fulls + expose per-image scale
2026-06-27 19:41:20 +02:00
compression
Compression: add BSHUF_ZSTD_RLE_HUFF (RLE runs + Huffman literals)
2026-06-27 14:41:46 +02:00
detector_control
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
docker
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
docs
docs: correct CPU_DATA_ANALYSIS integration section (profile-fit, not summation)
2026-06-28 11:16:00 +02:00
etc
v1.0.0-rc.115 (#22)
2025-12-04 11:56:14 +01:00
fpga
v1.0.0-rc.155 (#65)
2026-06-25 22:01:48 +02:00
frame_serialize
Compression: add BSHUF_ZSTD_RLE_HUFF (RLE runs + Huffman literals)
2026-06-27 14:41:46 +02:00
frontend
Regenerate OpenAPI clients for bszstd_rlehuf compression value
2026-06-27 14:52:12 +02:00
gemmi_gph
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
image_analysis
indexing: deconvolve energy bandwidth from the profile radius
2026-06-28 10:56:49 +02:00
image_puller
v1.0.0-rc.155 (#65)
2026-06-25 22:01:48 +02:00
image_pusher
v1.0.0-rc.154 (#64)
2026-06-25 18:12:00 +02:00
include
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
jungfrau
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
licenses
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
lyso_test
v1.0.0-rc.155 (#65)
2026-06-25 22:01:48 +02:00
preview
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
process
rot3d: capture-aware sigma for under-captured fulls + expose per-image scale
2026-06-27 19:41:20 +02:00
reader
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
receiver
Compressor: throw on overflow instead of returning a negative size
2026-06-27 08:17:21 +02:00
tests
Test: prove Huffman-literals Compressed_Block with Number_of_Sequences=0 is valid
2026-06-27 14:47:16 +02:00
tools
rotation: fix mosaicity underestimate + default-on capture-uncertainty (ISa 10.7->19.1)
2026-06-27 23:57:04 +02:00
viewer
SearchSpaceGroup: POINTLESS-style rewrite, pipeline integration, twinning test
2026-06-26 16:11:28 +02:00
writer
Compression: add BSHUF_ZSTD_RLE_HUFF (RLE runs + Huffman literals)
2026-06-27 14:41:46 +02:00
xds-plugin
v1.0.0-rc.149 (#59)
2026-06-13 21:27:41 +02:00
.gitattributes
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
.gitignore
Python client is built in CI (no new release)
2024-10-23 21:13:22 +02:00
.gitlab-ci.yml
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
.readthedocs.yaml
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
CLAUDE.md
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CMakeLists.txt
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
CONTRIBUTING.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
gen_python_client.sh
v1.0.0-rc.125 (#32)
2026-02-18 16:17:21 +01:00
gitea_create_release.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitea_upload_file.py
v1.0.0-rc.94
2025-10-25 22:05:47 +02:00
gitlab_upload_release.sh
1.0.0-rc.89
2025-10-01 22:54:40 +02:00
LICENSE
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
make_doc.sh
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
README.md
version 1.0.0-rc.27
2024-12-02 21:17:14 +01:00
THIRD_PARTY_NOTICES.md
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
update_version.sh
v1.0.0-rc.125 (#32)
2026-02-18 16:17:21 +01:00
VERSION
v1.0.0-rc.155 (#65)
2026-06-25 22:01:48 +02:00

README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Jungfraujoch Data Acquisition System
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