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v1.0.0.rc-162 (#72) 
**Files written by Jungfraujoch now import correctly in DIALS, XDS and pyFAI.** A tilted detector, a grid scan, a still recorded at a goniometer position, and saturated or unreadable pixels were each described in a way that a third-party program acted on wrongly. If you process Jungfraujoch data outside Jungfraujoch, prefer this release to any earlier one.

* HDF5: the detector tilt (`rot1`/`rot2`/`rot3`) is exported correctly in the NXmx transformation chain; untilted geometries are unaffected.
* HDF5: a still recorded at a goniometer position is no longer read back as a single image, and a grid scan records a stationary spindle so a program that requires a rotation axis can open it.
* HDF5: the sample transformation chain is written in mounting order, with a Smargon head position told apart from the spindle, one entry per image, `module_offset` as a float unit vector, and `offset_units` on every offset.
* HDF5: saturated, underloaded and unreadable pixels are described so a downstream program masks them - `saturation_value`, `underload_value`, `error_value` and `bit_depth_readout` are written correctly, and a data file missing next to a VDS master reads as the error marker rather than as zero counts.
* HDF5: the rotation axis is read back under whatever name it carries, and `mirror_y` records whether the assembled image is mirrored in Y relative to the detector's raw readout.
* A grid scan and a goniometer axis can both be set; they are no longer alternatives.
* `images_per_file` is chosen from the acquisition when it is not given: a rotation sweep of at most 20000 images goes into a single data file, a grid scan splits on whole fast-axis rows, and stills and serial keep 1000.
* The writer refuses a stream whose start message declares a different pixel format than its images carry, and a DECTRIS detector sending signed images is no longer declared unsigned.
* The image stream can carry the sample transformation chain (`transformations`, in the END message); a producer that does not send it gets the same chain built by the writer.
* rugnux: fixing the space group with `-S` no longer prevents the lattice from being found - a lattice indexed in a different setting is reindexed into that group's own setting, and a run whose crystal does not have that group's lattice stops and names the cell it indexed as, rather than reporting statistics that cannot describe it.
* rugnux: the per-image resolution estimate now predicts the resolution the merged data reach rather than the highest-resolution spot found, and is reported as `SPOT_RESOLUTION_ESTIMATE`.
* rugnux: two runs of the same command on the same images produce the same merged intensities; the azimuthal profile written alongside them is not yet reproducible in the same way.
* rugnux: the offline lattice refinement is bounded by iterations rather than by a wall clock, so a loaded machine can no longer refine to a different lattice; a live acquisition keeps its real-time bound.
* rugnux: the detector-frame modulation correction is fitted on a grid spanning the detector, so whether it is applied no longer depends on how far integration reached.
* rugnux: the geometry pre-pass no longer writes `<prefix>_01.mtz`, `_01.cif`, `_01.hkl` and `_01_image.dat`; the refined second pass writes those files under `<prefix>`, and that is the result to use.
* rugnux: `_process.h5` describes the pixel format of the images it links to, and is written on a thread of its own.
* rugnux: the detector geometry is also logged in XDS's convention (`ORGX`/`ORGY`, detector axis vectors, rotation axis), so it can be compared with an XDS refinement.
* rugnux: an image integrated in pyFAI through the `.poni` file written by `--mode calibration` comes out with the correct azimuth, and the file declares pyFAI's `orientation`, which needs pyFAI 2024.01 or newer. Radial integration is unchanged.
* rugnux: a rotation run is substantially faster throughout - beam-stop detection, first-pass indexing, geometry refinement, integration, scaling and merging - and observations outside the scaling resolution range are dropped as they are ingested. The refined geometry, the space group chosen and the merged statistics are unchanged.
* Faster spot finding and indexing, on the broker as well as in rugnux; the spots found and the lattices indexed are unchanged.
* A run reserves substantially less GPU memory: nothing is allocated for buffers that are never read, and a worker builds only the engines it uses.
* rugnux: with `-N` left at its default the per-image loop of `--mode mx` uses at most 16 workers per GPU, rather than one per hardware thread; an explicit `-N` is obeyed as given.
* CUDA 12 builds now contain device code for Volta, so the RHEL 8 packages and the portable Linux `.tgz` run on a V100; the CUDA 13 artefacts (RHEL 9, Ubuntu, Windows) remain Turing and newer.
* The build resolves a single Eigen for the whole project, and refuses to configure if Ceres picks up a different one; a build that mixed two Eigen versions was undefined behaviour and crashed at -O2.
* Documentation: a security page, and the supported GPU generations and minimum NVIDIA driver version of every released artefact.

**Breaking change to OpenAPI** - regenerate the client (`jfjoch-client` 1.0.0-rc.162, `frontend/src/client`):
* `dataset_settings.images_per_file` is no longer `default: 1000` and no longer accepts `0`; it is optional, and its minimum is 1. A client sending `0` (previously "one file for the whole run") is now rejected - omit the field instead, which for a rotation sweep gives the same single file.
* `file_writer_format` now defaults to `NXmxVDS`, matching the server's own default and the layout recommended for DIALS, XDS and CrystFEL. A generated client that fills in schema defaults and does not set the format explicitly will write VDS masters where it previously wrote legacy ones; set `NXmxLegacy` explicitly to keep them.

---------

Co-authored-by: jungfrau <jungfrau@mx-aare-test.psi.ch>
Reviewed-on: #72
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-08-25 08:21:39 +02:00

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# jfjoch-client
API to control Jungfraujoch developed by the Paul Scherrer Institute (Switzerland).
Jungfraujoch is a data acquisition and analysis system for pixel array detectors, primarly PSI JUNGFRAU.
Jungfraujoch uses FPGA boards to acquire data at high data rates.
# License Clarification
While this API definition is licensed under GPL-3.0, **the GPL copyleft provisions do not apply**
when this file is used solely to generate OpenAPI clients or when implementing applications that
interact with the API. Generated client code and applications using this API definition are not
subject to the GPL license requirements and may be distributed under terms of your choosing.
This exception is similar in spirit to the Linux Kernel's approach to userspace API headers and
the GCC Runtime Library Exception. The Linux Kernel developers have explicitly stated that
user programs that merely use the kernel interfaces (syscalls, ioctl definitions, etc.) are not
derivative works of the kernel and are not subject to the terms of the GPL.
This exception is intended to allow wider use of this API specification without imposing GPL
requirements on applications that merely interact with the API, regardless of whether they
communicate through network calls or other mechanisms.
This Python package is automatically generated by the [OpenAPI Generator](https://openapi-generator.tech) project:
- API version: 1.0.0-rc.162
- Package version: 1.0.0-rc.162
- Generator version: 7.20.0
- Build package: org.openapitools.codegen.languages.PythonClientCodegen
## Requirements.
Python 3.9+
## Installation & Usage
### pip install
If the python package is hosted on a repository, you can install directly using:
```sh
pip install git+https://gitea.psi.ch/mx/jungfraujoch.git
```
(you may need to run `pip` with root permission: `sudo pip install git+https://gitea.psi.ch/mx/jungfraujoch.git`)
Then import the package:
```python
import jfjoch_client
```
### Setuptools
Install via [Setuptools](http://pypi.python.org/pypi/setuptools).
```sh
python setup.py install --user
```
(or `sudo python setup.py install` to install the package for all users)
Then import the package:
```python
import jfjoch_client
```
### Tests
Execute `pytest` to run the tests.
## Getting Started
Please follow the [installation procedure](#installation--usage) and then run the following:
```python
import jfjoch_client
from jfjoch_client.rest import ApiException
from pprint import pprint
# Defining the host is optional and defaults to http://localhost:5232
# See configuration.py for a list of all supported configuration parameters.
configuration = jfjoch_client.Configuration(
host = "http://localhost:5232"
)
# Enter a context with an instance of the API client
with jfjoch_client.ApiClient(configuration) as api_client:
# Create an instance of the API class
api_instance = jfjoch_client.DefaultApi(api_client)
try:
# Cancel running data collection
api_instance.cancel_post()
except ApiException as e:
print("Exception when calling DefaultApi->cancel_post: %s\n" % e)
```
## Documentation for API Endpoints
All URIs are relative to *http://localhost:5232*
Class | Method | HTTP request | Description
------------ | ------------- | ------------- | -------------
*DefaultApi* | [**cancel_post**](docs/DefaultApi.md#cancel_post) | **POST** /cancel | Cancel running data collection
*DefaultApi* | [**config_azim_int_get**](docs/DefaultApi.md#config_azim_int_get) | **GET** /config/azim_int | Get azimuthal integration configuration
*DefaultApi* | [**config_azim_int_put**](docs/DefaultApi.md#config_azim_int_put) | **PUT** /config/azim_int | Configure azimuthal integration
*DefaultApi* | [**config_bragg_integration_get**](docs/DefaultApi.md#config_bragg_integration_get) | **GET** /config/bragg_integration | Get Bragg integration configuration
*DefaultApi* | [**config_bragg_integration_put**](docs/DefaultApi.md#config_bragg_integration_put) | **PUT** /config/bragg_integration | Change Bragg integration settings
*DefaultApi* | [**config_dark_mask_get**](docs/DefaultApi.md#config_dark_mask_get) | **GET** /config/dark_mask | Get settings for dark data collection to calculate mask
*DefaultApi* | [**config_dark_mask_put**](docs/DefaultApi.md#config_dark_mask_put) | **PUT** /config/dark_mask | Set configuration for dark data collection to calculate mask
*DefaultApi* | [**config_detector_get**](docs/DefaultApi.md#config_detector_get) | **GET** /config/detector | Get detector configuration
*DefaultApi* | [**config_detector_put**](docs/DefaultApi.md#config_detector_put) | **PUT** /config/detector | Change detector configuration
*DefaultApi* | [**config_file_writer_get**](docs/DefaultApi.md#config_file_writer_get) | **GET** /config/file_writer | Get file writer settings
*DefaultApi* | [**config_file_writer_put**](docs/DefaultApi.md#config_file_writer_put) | **PUT** /config/file_writer | Change file writer settings
*DefaultApi* | [**config_image_format_conversion_post**](docs/DefaultApi.md#config_image_format_conversion_post) | **POST** /config/image_format/conversion | Configure format for data collection with full conversion
*DefaultApi* | [**config_image_format_get**](docs/DefaultApi.md#config_image_format_get) | **GET** /config/image_format | Get image output format
*DefaultApi* | [**config_image_format_put**](docs/DefaultApi.md#config_image_format_put) | **PUT** /config/image_format | Change image output format
*DefaultApi* | [**config_image_format_raw_post**](docs/DefaultApi.md#config_image_format_raw_post) | **POST** /config/image_format/raw | Configure format for raw data collection
*DefaultApi* | [**config_indexing_get**](docs/DefaultApi.md#config_indexing_get) | **GET** /config/indexing | Get indexing configuration
*DefaultApi* | [**config_indexing_put**](docs/DefaultApi.md#config_indexing_put) | **PUT** /config/indexing | Change indexing algorithm settings
*DefaultApi* | [**config_instrument_get**](docs/DefaultApi.md#config_instrument_get) | **GET** /config/instrument | Get instrument metadata
*DefaultApi* | [**config_instrument_put**](docs/DefaultApi.md#config_instrument_put) | **PUT** /config/instrument | Change instrument metadata
*DefaultApi* | [**config_internal_generator_image_put**](docs/DefaultApi.md#config_internal_generator_image_put) | **PUT** /config/internal_generator_image | Load binary image for internal FPGA generator
*DefaultApi* | [**config_internal_generator_image_tiff_put**](docs/DefaultApi.md#config_internal_generator_image_tiff_put) | **PUT** /config/internal_generator_image.tiff | Load TIFF image for internal FPGA generator
*DefaultApi* | [**config_mask_get**](docs/DefaultApi.md#config_mask_get) | **GET** /config/mask | Get mask of the detector (binary)
*DefaultApi* | [**config_mask_tiff_get**](docs/DefaultApi.md#config_mask_tiff_get) | **GET** /config/mask.tiff | Get mask of the detector (TIFF)
*DefaultApi* | [**config_roi_get**](docs/DefaultApi.md#config_roi_get) | **GET** /config/roi | Get ROI definitions
*DefaultApi* | [**config_roi_put**](docs/DefaultApi.md#config_roi_put) | **PUT** /config/roi | Upload ROI definitions
*DefaultApi* | [**config_select_detector_get**](docs/DefaultApi.md#config_select_detector_get) | **GET** /config/select_detector | List available detectors
*DefaultApi* | [**config_select_detector_put**](docs/DefaultApi.md#config_select_detector_put) | **PUT** /config/select_detector | Select detector
*DefaultApi* | [**config_spot_finding_get**](docs/DefaultApi.md#config_spot_finding_get) | **GET** /config/spot_finding | Get data processing configuration
*DefaultApi* | [**config_spot_finding_put**](docs/DefaultApi.md#config_spot_finding_put) | **PUT** /config/spot_finding | Configure spot finding
*DefaultApi* | [**config_user_mask_get**](docs/DefaultApi.md#config_user_mask_get) | **GET** /config/user_mask | Detector must be Initialized. Get user mask of the detector (binary)
*DefaultApi* | [**config_user_mask_put**](docs/DefaultApi.md#config_user_mask_put) | **PUT** /config/user_mask | Upload user mask of the detector (binary)
*DefaultApi* | [**config_user_mask_tiff_get**](docs/DefaultApi.md#config_user_mask_tiff_get) | **GET** /config/user_mask.tiff | Detector must be Initialized. Get user mask of the detector (TIFF)
*DefaultApi* | [**config_user_mask_tiff_put**](docs/DefaultApi.md#config_user_mask_tiff_put) | **PUT** /config/user_mask.tiff | Upload user mask of the detector
*DefaultApi* | [**config_zeromq_metadata_get**](docs/DefaultApi.md#config_zeromq_metadata_get) | **GET** /config/zeromq_metadata | Get ZeroMQ metadata socket settings
*DefaultApi* | [**config_zeromq_metadata_put**](docs/DefaultApi.md#config_zeromq_metadata_put) | **PUT** /config/zeromq_metadata | Set ZeroMQ metadata settings
*DefaultApi* | [**config_zeromq_preview_get**](docs/DefaultApi.md#config_zeromq_preview_get) | **GET** /config/zeromq_preview | Get ZeroMQ preview settings
*DefaultApi* | [**config_zeromq_preview_put**](docs/DefaultApi.md#config_zeromq_preview_put) | **PUT** /config/zeromq_preview | Set ZeroMQ preview settings
*DefaultApi* | [**deactivate_post**](docs/DefaultApi.md#deactivate_post) | **POST** /deactivate | Prepare detector to turn off
*DefaultApi* | [**detector_status_get**](docs/DefaultApi.md#detector_status_get) | **GET** /detector/status | Get detector status
*DefaultApi* | [**fpga_status_get**](docs/DefaultApi.md#fpga_status_get) | **GET** /fpga_status | Get status of FPGA devices
*DefaultApi* | [**image_buffer_clear_post**](docs/DefaultApi.md#image_buffer_clear_post) | **POST** /image_buffer/clear | Clear image buffer
*DefaultApi* | [**image_buffer_image_cbor_get**](docs/DefaultApi.md#image_buffer_image_cbor_get) | **GET** /image_buffer/image.cbor | Get image message in CBOR format
*DefaultApi* | [**image_buffer_image_jpeg_get**](docs/DefaultApi.md#image_buffer_image_jpeg_get) | **GET** /image_buffer/image.jpeg | Get preview image in JPEG format using custom settings
*DefaultApi* | [**image_buffer_image_tiff_get**](docs/DefaultApi.md#image_buffer_image_tiff_get) | **GET** /image_buffer/image.tiff | Get preview image in TIFF format
*DefaultApi* | [**image_buffer_start_cbor_get**](docs/DefaultApi.md#image_buffer_start_cbor_get) | **GET** /image_buffer/start.cbor | Get Start message in CBOR format
*DefaultApi* | [**image_buffer_status_get**](docs/DefaultApi.md#image_buffer_status_get) | **GET** /image_buffer/status | Get status of the image buffers
*DefaultApi* | [**image_pusher_status_get**](docs/DefaultApi.md#image_pusher_status_get) | **GET** /image_pusher/status | Get status of image pusher
*DefaultApi* | [**initialize_post**](docs/DefaultApi.md#initialize_post) | **POST** /initialize | Initialize detector and data acquisition
*DefaultApi* | [**pedestal_post**](docs/DefaultApi.md#pedestal_post) | **POST** /pedestal | Collect dark current for the detector
*DefaultApi* | [**preview_pedestal_tiff_get**](docs/DefaultApi.md#preview_pedestal_tiff_get) | **GET** /preview/pedestal.tiff | Get pedestal in TIFF format
*DefaultApi* | [**preview_plot_bin_get**](docs/DefaultApi.md#preview_plot_bin_get) | **GET** /preview/plot.bin | Generate 1D plot from Jungfraujoch and send in raw binary format. Data are provided as (32-bit) float binary array. This format doesn&#39;t transmit information about X-axis, only values, so it is of limited use for azimuthal integration.
*DefaultApi* | [**preview_plot_get**](docs/DefaultApi.md#preview_plot_get) | **GET** /preview/plot | Generate 1D plot from Jungfraujoch
*DefaultApi* | [**result_scan_get**](docs/DefaultApi.md#result_scan_get) | **GET** /result/scan | Get full scan result
*DefaultApi* | [**start_post**](docs/DefaultApi.md#start_post) | **POST** /start | Start detector
*DefaultApi* | [**statistics_calibration_get**](docs/DefaultApi.md#statistics_calibration_get) | **GET** /statistics/calibration | Get calibration statistics
*DefaultApi* | [**statistics_data_collection_get**](docs/DefaultApi.md#statistics_data_collection_get) | **GET** /statistics/data_collection | Get data collection statistics
*DefaultApi* | [**statistics_get**](docs/DefaultApi.md#statistics_get) | **GET** /statistics | Get general statistics
*DefaultApi* | [**status_get**](docs/DefaultApi.md#status_get) | **GET** /status | Get Jungfraujoch status
*DefaultApi* | [**trigger_post**](docs/DefaultApi.md#trigger_post) | **POST** /trigger | Send soft trigger to the detector
*DefaultApi* | [**version_get**](docs/DefaultApi.md#version_get) | **GET** /version | Get Jungfraujoch version of jfjoch_broker
*DefaultApi* | [**wait_till_done_post**](docs/DefaultApi.md#wait_till_done_post) | **POST** /wait_till_done | Wait for acquisition done
*DefaultApi* | [**wait_until_running_post**](docs/DefaultApi.md#wait_until_running_post) | **POST** /wait_until_running | Wait for acquisition running
*DefaultApi* | [**xfel_event_code_get**](docs/DefaultApi.md#xfel_event_code_get) | **GET** /xfel/event_code | Return XFEL event codes for the current data acquisition
*DefaultApi* | [**xfel_pulse_id_get**](docs/DefaultApi.md#xfel_pulse_id_get) | **GET** /xfel/pulse_id | Return XFEL pulse IDs for the current data acquisition
## Documentation For Models
- [AzimIntSettings](docs/AzimIntSettings.md)
- [BraggIntegrationSettings](docs/BraggIntegrationSettings.md)
- [BrokerStatus](docs/BrokerStatus.md)
- [CalibrationStatisticsInner](docs/CalibrationStatisticsInner.md)
- [DarkMaskSettings](docs/DarkMaskSettings.md)
- [DatasetSettings](docs/DatasetSettings.md)
- [DatasetSettingsSmargon](docs/DatasetSettingsSmargon.md)
- [DatasetSettingsXrayFluorescenceSpectrum](docs/DatasetSettingsXrayFluorescenceSpectrum.md)
- [Detector](docs/Detector.md)
- [DetectorList](docs/DetectorList.md)
- [DetectorListElement](docs/DetectorListElement.md)
- [DetectorModule](docs/DetectorModule.md)
- [DetectorModuleDirection](docs/DetectorModuleDirection.md)
- [DetectorPowerState](docs/DetectorPowerState.md)
- [DetectorSelection](docs/DetectorSelection.md)
- [DetectorSettings](docs/DetectorSettings.md)
- [DetectorState](docs/DetectorState.md)
- [DetectorStatus](docs/DetectorStatus.md)
- [DetectorTiming](docs/DetectorTiming.md)
- [DetectorType](docs/DetectorType.md)
- [ErrorMessage](docs/ErrorMessage.md)
- [FileWriterFormat](docs/FileWriterFormat.md)
- [FileWriterSettings](docs/FileWriterSettings.md)
- [FpgaStatusInner](docs/FpgaStatusInner.md)
- [GeomRefinementAlgorithm](docs/GeomRefinementAlgorithm.md)
- [GridScan](docs/GridScan.md)
- [ImageBufferStatus](docs/ImageBufferStatus.md)
- [ImageFormatSettings](docs/ImageFormatSettings.md)
- [ImagePusherStatus](docs/ImagePusherStatus.md)
- [ImagePusherType](docs/ImagePusherType.md)
- [IndexingAlgorithm](docs/IndexingAlgorithm.md)
- [IndexingSettings](docs/IndexingSettings.md)
- [InstrumentMetadata](docs/InstrumentMetadata.md)
- [IntegrationModel](docs/IntegrationModel.md)
- [JfjochSettings](docs/JfjochSettings.md)
- [JfjochStatistics](docs/JfjochStatistics.md)
- [MeasurementStatistics](docs/MeasurementStatistics.md)
- [PcieDevicesInner](docs/PcieDevicesInner.md)
- [PixelMaskStatistics](docs/PixelMaskStatistics.md)
- [Plot](docs/Plot.md)
- [PlotUnitX](docs/PlotUnitX.md)
- [Plots](docs/Plots.md)
- [RoiAzimList](docs/RoiAzimList.md)
- [RoiAzimuthal](docs/RoiAzimuthal.md)
- [RoiBox](docs/RoiBox.md)
- [RoiBoxList](docs/RoiBoxList.md)
- [RoiCircle](docs/RoiCircle.md)
- [RoiCircleList](docs/RoiCircleList.md)
- [RoiDefinitions](docs/RoiDefinitions.md)
- [RotationAxis](docs/RotationAxis.md)
- [ScanResult](docs/ScanResult.md)
- [ScanResultImagesInner](docs/ScanResultImagesInner.md)
- [SpotFindingSettings](docs/SpotFindingSettings.md)
- [StandardDetectorGeometry](docs/StandardDetectorGeometry.md)
- [TcpSettings](docs/TcpSettings.md)
- [UnitCell](docs/UnitCell.md)
- [ZeromqMetadataSettings](docs/ZeromqMetadataSettings.md)
- [ZeromqPreviewSettings](docs/ZeromqPreviewSettings.md)
- [ZeromqSettings](docs/ZeromqSettings.md)
<a id="documentation-for-authorization"></a>
## Documentation For Authorization
Endpoints do not require authorization.
## Author
filip.leonarski@psi.ch
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