Files
Jungfraujoch/docs/python_client
leonarski_fandjungfrau 4dc2534dbf
Build Packages / build:rpm (rocky9_sls9) (push) Successful in 18m57s
Build Packages / Unit tests (push) Skipped
Build Packages / build:windows:nocuda (push) Successful in 16m55s
Build Packages / build:windows:cuda (push) Successful in 18m48s
Build Packages / build:viewer-tgz:cpu (push) Successful in 13m10s
Build Packages / build:viewer-tgz:cuda (push) Successful in 14m45s
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 22m23s
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 20m12s
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 23m7s
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 20m43s
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 23m9s
Build Packages / XDS test (durin plugin) (push) Successful in 12m26s
Build Packages / build:rpm (rocky9) (push) Successful in 24m58s
Build Packages / Generate python client (push) Successful in 50s
Build Packages / build:rpm (ubuntu2404) (push) Successful in 23m20s
Build Packages / Create release (push) Skipped
Build Packages / XDS test (JFJoch plugin) (push) Successful in 12m37s
Build Packages / build:rpm (rocky8) (push) Successful in 27m58s
Build Packages / build:rpm (ubuntu2204) (push) Successful in 25m38s
Build Packages / Build documentation (push) Successful in 59s
Build Packages / DIALS test (push) Successful in 23m16s
Build Packages / XDS test (neggia plugin) (push) Successful in 6m38s
v1.0.0.rc-162 (#72)
**Files written by Jungfraujoch now import correctly in DIALS, XDS and pyFAI.** A tilted detector, a grid scan, a still recorded at a goniometer position, and saturated or unreadable pixels were each described in a way that a third-party program acted on wrongly. If you process Jungfraujoch data outside Jungfraujoch, prefer this release to any earlier one.

* HDF5: the detector tilt (`rot1`/`rot2`/`rot3`) is exported correctly in the NXmx transformation chain; untilted geometries are unaffected.
* HDF5: a still recorded at a goniometer position is no longer read back as a single image, and a grid scan records a stationary spindle so a program that requires a rotation axis can open it.
* HDF5: the sample transformation chain is written in mounting order, with a Smargon head position told apart from the spindle, one entry per image, `module_offset` as a float unit vector, and `offset_units` on every offset.
* HDF5: saturated, underloaded and unreadable pixels are described so a downstream program masks them - `saturation_value`, `underload_value`, `error_value` and `bit_depth_readout` are written correctly, and a data file missing next to a VDS master reads as the error marker rather than as zero counts.
* HDF5: the rotation axis is read back under whatever name it carries, and `mirror_y` records whether the assembled image is mirrored in Y relative to the detector's raw readout.
* A grid scan and a goniometer axis can both be set; they are no longer alternatives.
* `images_per_file` is chosen from the acquisition when it is not given: a rotation sweep of at most 20000 images goes into a single data file, a grid scan splits on whole fast-axis rows, and stills and serial keep 1000.
* The writer refuses a stream whose start message declares a different pixel format than its images carry, and a DECTRIS detector sending signed images is no longer declared unsigned.
* The image stream can carry the sample transformation chain (`transformations`, in the END message); a producer that does not send it gets the same chain built by the writer.
* rugnux: fixing the space group with `-S` no longer prevents the lattice from being found - a lattice indexed in a different setting is reindexed into that group's own setting, and a run whose crystal does not have that group's lattice stops and names the cell it indexed as, rather than reporting statistics that cannot describe it.
* rugnux: the per-image resolution estimate now predicts the resolution the merged data reach rather than the highest-resolution spot found, and is reported as `SPOT_RESOLUTION_ESTIMATE`.
* rugnux: two runs of the same command on the same images produce the same merged intensities; the azimuthal profile written alongside them is not yet reproducible in the same way.
* rugnux: the offline lattice refinement is bounded by iterations rather than by a wall clock, so a loaded machine can no longer refine to a different lattice; a live acquisition keeps its real-time bound.
* rugnux: the detector-frame modulation correction is fitted on a grid spanning the detector, so whether it is applied no longer depends on how far integration reached.
* rugnux: the geometry pre-pass no longer writes `<prefix>_01.mtz`, `_01.cif`, `_01.hkl` and `_01_image.dat`; the refined second pass writes those files under `<prefix>`, and that is the result to use.
* rugnux: `_process.h5` describes the pixel format of the images it links to, and is written on a thread of its own.
* rugnux: the detector geometry is also logged in XDS's convention (`ORGX`/`ORGY`, detector axis vectors, rotation axis), so it can be compared with an XDS refinement.
* rugnux: an image integrated in pyFAI through the `.poni` file written by `--mode calibration` comes out with the correct azimuth, and the file declares pyFAI's `orientation`, which needs pyFAI 2024.01 or newer. Radial integration is unchanged.
* rugnux: a rotation run is substantially faster throughout - beam-stop detection, first-pass indexing, geometry refinement, integration, scaling and merging - and observations outside the scaling resolution range are dropped as they are ingested. The refined geometry, the space group chosen and the merged statistics are unchanged.
* Faster spot finding and indexing, on the broker as well as in rugnux; the spots found and the lattices indexed are unchanged.
* A run reserves substantially less GPU memory: nothing is allocated for buffers that are never read, and a worker builds only the engines it uses.
* rugnux: with `-N` left at its default the per-image loop of `--mode mx` uses at most 16 workers per GPU, rather than one per hardware thread; an explicit `-N` is obeyed as given.
* CUDA 12 builds now contain device code for Volta, so the RHEL 8 packages and the portable Linux `.tgz` run on a V100; the CUDA 13 artefacts (RHEL 9, Ubuntu, Windows) remain Turing and newer.
* The build resolves a single Eigen for the whole project, and refuses to configure if Ceres picks up a different one; a build that mixed two Eigen versions was undefined behaviour and crashed at -O2.
* Documentation: a security page, and the supported GPU generations and minimum NVIDIA driver version of every released artefact.

**Breaking change to OpenAPI** - regenerate the client (`jfjoch-client` 1.0.0-rc.162, `frontend/src/client`):
* `dataset_settings.images_per_file` is no longer `default: 1000` and no longer accepts `0`; it is optional, and its minimum is 1. A client sending `0` (previously "one file for the whole run") is now rejected - omit the field instead, which for a rotation sweep gives the same single file.
* `file_writer_format` now defaults to `NXmxVDS`, matching the server's own default and the layout recommended for DIALS, XDS and CrystFEL. A generated client that fills in schema defaults and does not set the format explicitly will write VDS masters where it previously wrote legacy ones; set `NXmxLegacy` explicitly to keep them.

---------

Co-authored-by: jungfrau <jungfrau@mx-aare-test.psi.ch>
Reviewed-on: #72
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-08-25 08:21:39 +02:00
..
2026-08-25 08:21:39 +02:00
2026-08-25 08:21:39 +02:00

jfjoch-client

API to control Jungfraujoch developed by the Paul Scherrer Institute (Switzerland). Jungfraujoch is a data acquisition and analysis system for pixel array detectors, primarly PSI JUNGFRAU. Jungfraujoch uses FPGA boards to acquire data at high data rates.

License Clarification

While this API definition is licensed under GPL-3.0, the GPL copyleft provisions do not apply when this file is used solely to generate OpenAPI clients or when implementing applications that interact with the API. Generated client code and applications using this API definition are not subject to the GPL license requirements and may be distributed under terms of your choosing.

This exception is similar in spirit to the Linux Kernel's approach to userspace API headers and the GCC Runtime Library Exception. The Linux Kernel developers have explicitly stated that user programs that merely use the kernel interfaces (syscalls, ioctl definitions, etc.) are not derivative works of the kernel and are not subject to the terms of the GPL.

This exception is intended to allow wider use of this API specification without imposing GPL requirements on applications that merely interact with the API, regardless of whether they communicate through network calls or other mechanisms.

This Python package is automatically generated by the OpenAPI Generator project:

  • API version: 1.0.0-rc.162
  • Package version: 1.0.0-rc.162
  • Generator version: 7.20.0
  • Build package: org.openapitools.codegen.languages.PythonClientCodegen

Requirements.

Python 3.9+

Installation & Usage

pip install

If the python package is hosted on a repository, you can install directly using:

pip install git+https://gitea.psi.ch/mx/jungfraujoch.git

(you may need to run pip with root permission: sudo pip install git+https://gitea.psi.ch/mx/jungfraujoch.git)

Then import the package:

import jfjoch_client

Setuptools

Install via Setuptools.

python setup.py install --user

(or sudo python setup.py install to install the package for all users)

Then import the package:

import jfjoch_client

Tests

Execute pytest to run the tests.

Getting Started

Please follow the installation procedure and then run the following:


import jfjoch_client
from jfjoch_client.rest import ApiException
from pprint import pprint

# Defining the host is optional and defaults to http://localhost:5232
# See configuration.py for a list of all supported configuration parameters.
configuration = jfjoch_client.Configuration(
    host = "http://localhost:5232"
)



# Enter a context with an instance of the API client
with jfjoch_client.ApiClient(configuration) as api_client:
    # Create an instance of the API class
    api_instance = jfjoch_client.DefaultApi(api_client)

    try:
        # Cancel running data collection
        api_instance.cancel_post()
    except ApiException as e:
        print("Exception when calling DefaultApi->cancel_post: %s\n" % e)

Documentation for API Endpoints

All URIs are relative to http://localhost:5232

Class Method HTTP request Description
DefaultApi cancel_post POST /cancel Cancel running data collection
DefaultApi config_azim_int_get GET /config/azim_int Get azimuthal integration configuration
DefaultApi config_azim_int_put PUT /config/azim_int Configure azimuthal integration
DefaultApi config_bragg_integration_get GET /config/bragg_integration Get Bragg integration configuration
DefaultApi config_bragg_integration_put PUT /config/bragg_integration Change Bragg integration settings
DefaultApi config_dark_mask_get GET /config/dark_mask Get settings for dark data collection to calculate mask
DefaultApi config_dark_mask_put PUT /config/dark_mask Set configuration for dark data collection to calculate mask
DefaultApi config_detector_get GET /config/detector Get detector configuration
DefaultApi config_detector_put PUT /config/detector Change detector configuration
DefaultApi config_file_writer_get GET /config/file_writer Get file writer settings
DefaultApi config_file_writer_put PUT /config/file_writer Change file writer settings
DefaultApi config_image_format_conversion_post POST /config/image_format/conversion Configure format for data collection with full conversion
DefaultApi config_image_format_get GET /config/image_format Get image output format
DefaultApi config_image_format_put PUT /config/image_format Change image output format
DefaultApi config_image_format_raw_post POST /config/image_format/raw Configure format for raw data collection
DefaultApi config_indexing_get GET /config/indexing Get indexing configuration
DefaultApi config_indexing_put PUT /config/indexing Change indexing algorithm settings
DefaultApi config_instrument_get GET /config/instrument Get instrument metadata
DefaultApi config_instrument_put PUT /config/instrument Change instrument metadata
DefaultApi config_internal_generator_image_put PUT /config/internal_generator_image Load binary image for internal FPGA generator
DefaultApi config_internal_generator_image_tiff_put PUT /config/internal_generator_image.tiff Load TIFF image for internal FPGA generator
DefaultApi config_mask_get GET /config/mask Get mask of the detector (binary)
DefaultApi config_mask_tiff_get GET /config/mask.tiff Get mask of the detector (TIFF)
DefaultApi config_roi_get GET /config/roi Get ROI definitions
DefaultApi config_roi_put PUT /config/roi Upload ROI definitions
DefaultApi config_select_detector_get GET /config/select_detector List available detectors
DefaultApi config_select_detector_put PUT /config/select_detector Select detector
DefaultApi config_spot_finding_get GET /config/spot_finding Get data processing configuration
DefaultApi config_spot_finding_put PUT /config/spot_finding Configure spot finding
DefaultApi config_user_mask_get GET /config/user_mask Detector must be Initialized. Get user mask of the detector (binary)
DefaultApi config_user_mask_put PUT /config/user_mask Upload user mask of the detector (binary)
DefaultApi config_user_mask_tiff_get GET /config/user_mask.tiff Detector must be Initialized. Get user mask of the detector (TIFF)
DefaultApi config_user_mask_tiff_put PUT /config/user_mask.tiff Upload user mask of the detector
DefaultApi config_zeromq_metadata_get GET /config/zeromq_metadata Get ZeroMQ metadata socket settings
DefaultApi config_zeromq_metadata_put PUT /config/zeromq_metadata Set ZeroMQ metadata settings
DefaultApi config_zeromq_preview_get GET /config/zeromq_preview Get ZeroMQ preview settings
DefaultApi config_zeromq_preview_put PUT /config/zeromq_preview Set ZeroMQ preview settings
DefaultApi deactivate_post POST /deactivate Prepare detector to turn off
DefaultApi detector_status_get GET /detector/status Get detector status
DefaultApi fpga_status_get GET /fpga_status Get status of FPGA devices
DefaultApi image_buffer_clear_post POST /image_buffer/clear Clear image buffer
DefaultApi image_buffer_image_cbor_get GET /image_buffer/image.cbor Get image message in CBOR format
DefaultApi image_buffer_image_jpeg_get GET /image_buffer/image.jpeg Get preview image in JPEG format using custom settings
DefaultApi image_buffer_image_tiff_get GET /image_buffer/image.tiff Get preview image in TIFF format
DefaultApi image_buffer_start_cbor_get GET /image_buffer/start.cbor Get Start message in CBOR format
DefaultApi image_buffer_status_get GET /image_buffer/status Get status of the image buffers
DefaultApi image_pusher_status_get GET /image_pusher/status Get status of image pusher
DefaultApi initialize_post POST /initialize Initialize detector and data acquisition
DefaultApi pedestal_post POST /pedestal Collect dark current for the detector
DefaultApi preview_pedestal_tiff_get GET /preview/pedestal.tiff Get pedestal in TIFF format
DefaultApi preview_plot_bin_get GET /preview/plot.bin Generate 1D plot from Jungfraujoch and send in raw binary format. Data are provided as (32-bit) float binary array. This format doesn't transmit information about X-axis, only values, so it is of limited use for azimuthal integration.
DefaultApi preview_plot_get GET /preview/plot Generate 1D plot from Jungfraujoch
DefaultApi result_scan_get GET /result/scan Get full scan result
DefaultApi start_post POST /start Start detector
DefaultApi statistics_calibration_get GET /statistics/calibration Get calibration statistics
DefaultApi statistics_data_collection_get GET /statistics/data_collection Get data collection statistics
DefaultApi statistics_get GET /statistics Get general statistics
DefaultApi status_get GET /status Get Jungfraujoch status
DefaultApi trigger_post POST /trigger Send soft trigger to the detector
DefaultApi version_get GET /version Get Jungfraujoch version of jfjoch_broker
DefaultApi wait_till_done_post POST /wait_till_done Wait for acquisition done
DefaultApi wait_until_running_post POST /wait_until_running Wait for acquisition running
DefaultApi xfel_event_code_get GET /xfel/event_code Return XFEL event codes for the current data acquisition
DefaultApi xfel_pulse_id_get GET /xfel/pulse_id Return XFEL pulse IDs for the current data acquisition

Documentation For Models

Documentation For Authorization

Endpoints do not require authorization.

Author

filip.leonarski@psi.ch