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leonarski_fandClaude Opus 5 67bf380401 docs: credit DENZO/SCALEPACK and MOSFLM for the 2D-then-merge architecture 
Both programs were acknowledged for specifics (profile-fit variances, FFT
autoindexing, post-refinement practice) but not for the paradigm rugnux's
rotation pipeline is built on: integrate each image in 2D, then combine the
partials into fulls, as against XDS's 3D profiles. One paragraph names it;
the citations were already on the page.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
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.gitea/workflows
v1.0.0-rc.164 (#74)
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acquisition_device
v1.0.0.rc-161 (#71)
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broker
api: name the calibration schemas powder_, not calibration_
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common
cbor: carry the direct beam on the start message
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compression
compression: read plain LZ4 (HDF5 filter 32004), and name the filter when one is unsupported
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detector_control
v1.0.0.rc-162 (#72)
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docker
v1.0.0-rc.164 (#74)
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docs
docs: credit DENZO/SCALEPACK and MOSFLM for the 2D-then-merge architecture
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etc
Spot finding: bound how large a spot may be, not how bright
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fpga
release: 1.0.0-rc.166
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frame_serialize
cbor: carry the direct beam on the start message
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frontend
api: name the calibration schemas powder_, not calibration_
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gemmi_gph
v1.0.0-rc.165 (#75)
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image_analysis
docs: credit the L test, FFT indexing, TORO, Niggli, peakfinder8 and SparseCCL
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image_puller
v1.0.0-rc.165 (#75)
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image_pusher
v1.0.0-rc.165 (#75)
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include
v1.0.0-rc.133
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jungfrau
v1.0.0-rc.153 (#63)
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licenses
v1.0.0-rc.165 (#75)
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lyso_test
v1.0.0-rc.160 (#70)
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preview
v1.0.0-rc.164 (#74)
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reader
reader: refuse a CBF that is not a detector image instead of misreading it
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receiver
v1.0.0-rc.165 (#75)
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rugnux
report: name the groups the data could not separate, as keys
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tests
report: name the groups the data could not separate, as keys
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tools
v1.0.0-rc.164 (#74)
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viewer
calibration: move the powder fit into image_analysis/geom_refinement
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writer
writer: the direct beam is absent where there is no geometry, not fatal
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xds-plugin
v1.0.0-rc.149 (#59)
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.gitattributes
v1.0.0-rc.153 (#63)
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.gitignore
v1.0.0.rc-162 (#72)
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.readthedocs.yaml
version 1.0.0-rc.25
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CLAUDE.md
docs: write down the three directions this work is heading in
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CMakeLists.txt
v1.0.0-rc.164 (#74)
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CONTRIBUTING.md
version 1.0.0-rc.27
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gen_python_client.sh
v1.0.0.rc-161 (#71)
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gitea_create_release.py
v1.0.0-rc.94
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gitea_upload_file.py
v1.0.0-rc.156 (#66)
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LICENSE
v1.0.0-rc.153 (#63)
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make_doc.sh
v1.0.0.rc-161 (#71)
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README.md
version 1.0.0-rc.27
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rugnux_anomalous.py
v1.0.0.rc-162 (#72)
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rugnux_stills_ab.py
rugnux: write the unmerged MTZ by default
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rugnux_vs_xds.py
rugnux: write the unmerged MTZ by default
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stills_datasets.tsv
v1.0.0-rc.164 (#74)
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THIRD_PARTY_NOTICES.md
v1.0.0-rc.165 (#75)
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update_version.sh
v1.0.0.rc-161 (#71)
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VERSION
release: 1.0.0-rc.166
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README.md

Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

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Jungfraujoch Data Acquisition System
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