leonarski_fandClaude Opus 5 6491345fea comment: say what the refined geometry in the end message actually is
Two things the field names hide, both verified in code and both able to mislead a
reader into publishing a wrong geometry.

The beam centre written here is the PONI - the foot of the perpendicular from the
sample to the detector plane - so on a tilted detector it is not where the direct
beam lands. That point is D*tan(rot)/pixel away and is GetDirectBeam_pxl().

And the tilt is not written only for the record, which the old comment implied by
mentioning nothing but the _process.h5: IndexAndRefine puts it on
outcome.experiment, which is the geometry Bragg prediction and integration then
run at. It is fitted with the distance frozen and nothing checks the covariance,
so the split between the PONI and the tilt is not reproducible between passes even
though their sum - the direct beam - is.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
Readme GPL-3.0
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