T

leonarski_fandClaude Opus 5.5 645d1cc1bb CHANGELOG: rc.175 says --model falls back to molecular replacement and takes predicted models; viewer refresh

The --mr line now says what the unified --model flow does for a user: a predicted model is
accepted, and a model the rigid body does not place goes to molecular replacement, with --mr
forcing it. One viewer line for the Files panel refresh (F5 and the poll) and the combo boxes
that no longer reset during live collection. Owner-requested edit.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EizBKhTqrAYago9KJG3dA3

2026-10-13 07:41:37 +02:00

.gitea/workflows

CI: unit tests and the validation battery take turns on the GPU

2026-10-12 12:59:55 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Broker: log why a DECTRIS run ends in a detector error, reuse one SIMPLON connection

2026-10-08 22:45:42 +02:00

common

Merge branch 'fft-admit' into rc175: FFT indexer construction waits for GPU work beside it before failing

2026-10-11 14:06:12 +02:00

compression

marCCD frames are widened on the device

2026-10-12 22:37:47 +02:00

detector_control

DectrisSimplonClient: separate connections for commands and status reads

2026-10-08 22:53:01 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

CHANGELOG: rc.175 says --model falls back to molecular replacement and takes predicted models; viewer refresh

2026-10-13 07:41:37 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

frame_serialize

v1.0.0-rc.173 (#83 )

2026-09-29 15:57:32 +02:00

frontend

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

gemmi_gph

Model validation expands strict NCS; the written cell follows the model's indexing

2026-10-10 13:35:49 +02:00

image_analysis

marCCD upload: stage the stored pixels instead of page-locking the frame in place

2026-10-13 05:21:33 +02:00

image_puller

v1.0.0-rc.169 (#79 )

2026-09-15 17:09:31 +02:00

image_pusher

TCP pusher: never block the receiver thread; queue bounded by image-buffer slots

2026-10-10 21:11:09 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client

2026-10-07 21:16:04 +02:00

preview

Thread count from the CPUs the process may use, not the machine's

2026-10-08 11:15:29 +02:00

reader

marCCD frames are widened on the device

2026-10-12 22:37:47 +02:00

receiver

TCP pusher: never block the receiver thread; queue bounded by image-buffer slots

2026-10-10 21:11:09 +02:00

rugnux

Merge branch 'gpu-loops' into rc175: prediction ordered and selected on the GPU, CBF byte-offset decoded and marCCD widened on the GPU

2026-10-13 03:28:19 +02:00

tests

ModelValidationTest: the null runs on every validation that judges its model

2026-10-13 05:21:33 +02:00

tools

battery nullmodel: a section title is '# N. TITLE', not any comment line starting with a digit

2026-10-13 00:29:06 +02:00

viewer

jfjoch_viewer: live updates no longer rebuild open combo boxes

2026-10-12 19:46:48 +02:00

writer

TCP pusher: never block the receiver thread; queue bounded by image-buffer slots

2026-10-10 21:11:09 +02:00

xds-plugin

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

CMakeLists.txt

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

rugnux_anomalous.py

v1.0.0.rc-162 (#72 )

2026-08-25 08:21:39 +02:00

rugnux_stills_ab.py

v1.0.0-rc.172 (#82 )

2026-09-22 06:48:37 +02:00

stills_datasets.tsv

v1.0.0-rc.164 (#74 )

2026-08-26 22:47:00 +02:00

THIRD_PARTY_NOTICES.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

update_version.sh

XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build

2026-10-07 20:29:19 +02:00

VERSION

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.