leonarski_fandClaude Opus 5.5 645d1cc1bb CHANGELOG: rc.175 says --model falls back to molecular replacement and takes predicted models; viewer refresh ...

The --mr line now says what the unified --model flow does for a user: a predicted model is
accepted, and a model the rigid body does not place goes to molecular replacement, with --mr
forcing it. One viewer line for the Files panel refresh (F5 and the poll) and the combo boxes
that no longer reset during live collection. Owner-requested edit.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01EizBKhTqrAYago9KJG3dA3

2026-10-13 07:41:37 +02:00

..

images

Docs: battery report of the pushed rc.175, with commentary and figures

2026-10-09 16:38:23 +02:00

python_client

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

ACKNOWLEDGEMENT.md

rugnux: --af-model becomes --mr, for predictions and experimental structures alike

2026-10-12 19:30:22 +02:00

BATTERY_REPORT.md

Docs: battery report of the pushed rc.175, with commentary and figures

2026-10-09 16:38:23 +02:00

CBOR.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

CHANGELOG.md

CHANGELOG: rc.175 says --model falls back to molecular replacement and takes predicted models; viewer refresh

2026-10-13 07:41:37 +02:00

conf.py

1.0.0-rc.175

2026-10-07 14:14:39 +02:00

CPU_DATA_ANALYSIS_DECISIONS.md

rugnux --model: molecular replacement where the rigid body does not place the model

2026-10-12 22:20:36 +02:00

CPU_DATA_ANALYSIS_IMAGE.md

docs: acknowledge autoPROC and STARANISO as inspiration for header distrust, beam centre and anisotropy

2026-10-10 09:31:17 +02:00

CPU_DATA_ANALYSIS_INDEXING.md

docs: credit Bricogne's Fourier-transform indexing, autoPROC and Global Phasing

2026-10-10 09:29:33 +02:00

CPU_DATA_ANALYSIS_INTEGRATION.md

rugnux: drop the P1 cross-check; --finalist-ledger makes its own P1 merge

2026-10-07 19:04:40 +02:00

CPU_DATA_ANALYSIS.md

docs: acknowledge autoPROC and STARANISO as inspiration for header distrust, beam centre and anisotropy

2026-10-10 09:31:17 +02:00

DEPLOYMENT.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

DETECTOR_GEOMETRY.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

DETECTORS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

EXTERNAL_TEST_DATA.md

battery: add five large-cell sets to the open arm

2026-10-09 20:31:28 +02:00

FPGA_DATA_ANALYSIS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_DESIGN.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_LICENSE.md

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGA_NETWORK.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_PCIE_DRIVER.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_SETTINGS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

HARDWARE.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

HDF5.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

IMAGE_STREAM.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

index.rst

v1.0.0-rc.166 (#76)

2026-09-02 21:17:31 +02:00

JFJOCH_BROKER.md

Broker: a collection can be followed from /start, its start message comes in the event stream

2026-10-08 17:03:09 +02:00

JFJOCH_VIEWER.md

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

JFJOCH_WRITER.md

TCP pusher: never block the receiver thread; queue bounded by image-buffer slots

2026-10-10 21:11:09 +02:00

jfjoch.png

v1.0.0-rc.110 (#16)

2025-11-28 12:47:35 +01:00

LICENSE.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

NAMING.md

v1.0.0-rc.157 (#67)

2026-07-11 07:19:11 +02:00

OPENAPI_SPECS.rst

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

OPENAPI.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PIXEL_MASK.md

v1.0.0-rc.173 (#83)

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PYTHON_CLIENT.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

RELEASE_CONTENTS.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

REPOSITORIES.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

requirements.txt

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RUGNUX_ADVANCED.md

rugnux --model: score the twin hypothesis too, and take the maps from the merge the model prefers

2026-10-09 19:40:22 +02:00

RUGNUX_CALIBRATION.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

RUGNUX_FORMATS.md

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

RUGNUX_INSTALL.md

1.0.0-rc.174 (#84)

2026-10-06 14:03:18 +02:00

RUGNUX_INTEGRATION.md

rugnux report: XDS geometry keywords as one report section, not p_XDS.INP

2026-10-09 19:09:27 +02:00

RUGNUX_OVERVIEW.md

rugnux: take the decisions before pass 2 from the first part of a rotation sweep

2026-10-08 14:29:32 +02:00

RUGNUX_REPORT.md

rugnux --model: molecular replacement where the rigid body does not place the model

2026-10-12 22:20:36 +02:00

RUGNUX_TUTORIAL.md

rugnux --model: score the twin hypothesis too, and take the maps from the merge the model prefers

2026-10-09 19:40:22 +02:00

RUGNUX.md

rugnux report: XDS geometry keywords as one report section, not p_XDS.INP

2026-10-09 19:09:27 +02:00

SECURITY.md

Broker: a collection can be followed from /start, its start message comes in the event stream

2026-10-08 17:03:09 +02:00

SOFTWARE_INTEGRATION.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

SOFTWARE.md

viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client

2026-10-07 21:16:04 +02:00

TESTS.md

v1.0.0-rc.172 (#82)

2026-09-22 06:48:37 +02:00

THIRD_PARTY_NOTICES.md

XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin

2026-10-08 10:56:34 +02:00

TOOLS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

VERSIONING.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

WEB_FRONTEND.md

v1.0.0-rc.173 (#83)

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