leonarski_fandClaude Opus 5
5cc2f811b3
Two unrelated notes, one on each side of what the merge reports. The axis-harmonic precondition accepted any near-integer volume ratio. Its window is absolute in a unit integer spacing, so a ratio between two UNRELATED lattices passes it about a third of the time whatever the multiple is, and at 124x the pair is not a cell and its harmonic in any sense. That branch was harmless while the rule was "always take the smaller cell"; deciding the pair on the evidence makes it reachable, so it is now bounded at 4. Measured over the corpus: of 44 firings, all 36 at n <= 4 read 1.1 to 51.3 points BELOW the chance occupancy (n-1)/n, so an index-n sub-lattice really exists in each of them; all 8 above it - two datasets, both decided by 8 to 34 sigma, so not a margin problem - read within 7.8 points OF chance, so none does. The largest n at which a real sub-lattice was ever seen is 3, and no dataset moves either way. Separately, WILSON_B and _reflns.B_iso_Wilson_estimate are fitted to log<I> directly, which is what XDS's Wilson line does and is not what TRUNCATE, ctruncate or phenix.xtriage do - they divide out Sigma = sum f^2(s) first. Leaving Sigma in the slope inflates B by 2-8 A^2 on our own merges, and against those two programs on the same files this number runs 10-36 A^2 high, in the same direction every time. The docs said "the analogue of XDS's Wilson-line B", which is accurate but easy to read past; they now say the two conventions are not comparable and which one this is. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.