leonarski_fandClaude Fable 5 51bfdd2b35 Fix acquisition error-handling and rugnux CLI issues from branch review
Broker acquisition failure paths:
- Report a truncated writer output / missing packets as errors ahead of the
  queue-full warning, so an incomplete dataset is no longer masked as a
  "reduce frame rate" warning.
- Route PCIe/FPGA hardware faults to the Error state: make PCIeDeviceException a
  JFJochCriticalException, and stop JFJochServices::Stop() from slicing the
  caught exception (capture/rethrow via exception_ptr) so the critical type
  survives to the state machine.
- Stop the (possibly partially-armed) detector, not just the receiver, when a
  detector arm fails, so the next start does not see it BUSY.
- Return structured Error_message JSON for bind_json operation failures (e.g. a
  failed synchronous /start), matching the no-arg endpoints.

rugnux CLI:
- Default -N to all hardware threads, resolved once after parsing so full
  analysis, --azint-only and --scale behave the same.
- Parse numeric option arguments strictly (reject non-numeric input and trailing
  garbage) instead of atof/stod, which silently yielded 0 or aborted the
  process; require --wavelength > 0.
- Emit -R attached (-R100) in the reproduced command line so it re-parses.
- Compare the reference MTZ against the cell that actually drives the merge in
  the --scale path.
- Correct the --scaling-high-resolution help text and de-duplicate the
  offline-output experiment setup.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
Readme GPL-3.0
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