leonarski_fandClaude Opus 5.5 25ea9bf555 Rugnux: run independent probe passes beside each other, on copies of the run
The rotation two-pass runs several first-pass indexing probes one after the
other although some of them do not depend on each other:

- The rotation-scale walk always indexes at the stored angles and then at
  the pass-1 fit; both are known before it starts. The probe at the fit now
  runs at the same time, on a copy of the run as it stands before either.
  Its answer is taken only if the probe at the stored angles left behind
  none of the state the next pass reads (the spot-finding settings a
  first-pass ladder rung adopts; each probe puts the experiment back
  itself) - otherwise it is run again in sequence, as before.
- The geometry walk's indexing probe at the canonical pass's post-refined
  geometry depends on nothing that pass does after its post-refinement. It
  is now started there, on a copy, and runs beside the pass's scaling, merge
  and output; its evidence comes back through the first-pass memo (now a
  short list) and the walk's own probe takes it through the usual key check,
  so RUGNUX_VERIFY_FIRST_PASS_MEMO covers it too. It is started only for the
  passes whose post-refinement the walk probes with an indexing pass.

The copies are plain copies of Rugnux: the cancel flag becomes a shared
flag (so cancelling the run cancels them) and everything else was already
copyable. Probe passes run on a copy get no observer.

md5-identical output on two 16M sets; the walk's two probes take ~2.3 s
together instead of ~3 s, and the last probe of the geometry walk is hidden
behind the merge.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01D1G8gJVAy6gp1K5Dz3NE5C
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System, Rugnux Data Processing Application, and Diffraction Viewer
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