leonarski_fandClaude Opus 5
21eca107fa
The offline entry point for a raster. It scores every image of a stored grid scan - spot finding for the per-cell resolution, no indexing, because a raster answers where the crystal is and not what its lattice is - hands the per-image protein and ice scores to AnalyzeGridScan, and writes what came back as two files beside the usual output: <prefix>_raster_report.txt in the idiom of the results report, and <prefix>_raster.json with the same content typed, so a battery can aggregate a sweep without scraping prose. --beam-size states the beam at the sample, defaulting to the file's incident_beam_size. It matters more than it looks: the reported crystal sizes are measured and still contain the beam, and taking an anisotropic beam back out is a subtraction of two covariance matrices, so a beam given as square when it is not rotates the reported crystal axis. --raster-protein-threshold and --raster-min-cells expose the two constants AnalyzeGridScan held at file scope, so a sweep can vary them without a rebuild; they are now defaulted parameters with the old values, and every existing call is unchanged. The observer feeding the analysis reads the file's own image number (DataMessage::original_number), not the loop's ordinal, so -s/-e/--stride cannot silently shift the grid mapping. Co-Authored-By: Claude Opus 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.