leonarski_fandClaude Opus 5
04d823135e
Only under -S does the arm read a completeness with headroom. De novo the search merge is in P1 and does not count its possible reflections, so there is no number and CC1/2 is the only live term. Three ways to give the arm one back were measured on 28 rotation crystals and none lands, so say so at the guard rather than leave the next reader to rediscover them: * Count the possible reflections on the search merge too. It is affordable - 5.2 ms against a 38 s run - but a healthy crystal reads 27-43% of the P1 hemisphere, so the 100.5% bound is never approached and no decision changes. It would only add a figure to the user's report that reads as the dataset's completeness while being a fraction of a different group's asymmetric unit. * Observation count. The two search merges are built in the same terms, so pass 2 retaining under 90% of pass 1's observations looks like the signal the completeness ratio stood in for. It never fires - bit-identical on all 28, including the crystal whose pass 2 predicted 44% fewer partials. Predicted partials and observations that survive into the merge are not the same population. * Completeness ratio. Same idea one level up, and it does fire - on the wrong crystals. This merge is deliberately never resolution-cut, so the possible list grows with whatever range the pass reached and a pass that predicts FINER scores as one that lost the sweep. At a 0.90 bound it reverted two crystals indexing at 100%, taking one of them from 0.07% to 0.29% cell deviation and ISa 19.5 to 17.1, and rescued nothing. Bringing the wrong-cell detector back for de-novo data means putting it on the final merge or retiring the arm and saying so; neither is done here. No test covers the decision line: Rugnux_Rotation does not reach this guard - the two passes in its log are the indexer's, not RunAllPasses' - and there is no fixture for building a RotationScaleMerge, so an assertion placed there would never execute. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01EFEJG6WBQv8th4UJFNe53N
Jungfraujoch
Application to receive data from the PSI JUNGFRAU and EIGER detectors.
All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.