leonarski_fandClaude Fable 5 01e4f81e44
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Consolidate offline tools into rugnux; merge on by default
Fold jfjoch_azint and rugnux_scale into the single rugnux CLI, and flip
scaling/merging from opt-in to on-by-default.

- rugnux --azint-only replaces jfjoch_azint (reuses ProcessMode::
  AzimuthalIntegration; adds the correction toggles and geometry overrides
  the old tool carried).
- rugnux --scale replaces rugnux_scale (re-scale/merge stored reflections,
  same simpler scale/merge as before: no space-group search or rot3d
  defaults). Its workflow is folded into the CLI verbatim.
- Merging is now on by default for rotation and stills; --no-merge disables
  it, replacing -M/--scale-merge.

Also fix the batch ReadReflections reader so it works on rugnux's own
NXmxIntegrated _process.h5: read per-image reflections/mosaicity/lattice
from the master (global index) first, falling back to the source-data
locator for legacy/VDS datasets. Without this, both --scale and the former
rugnux_scale read zero reflections from an integrated snapshot.

RugnuxCommandLine now emits `rugnux --azint-only` and `--no-merge`; docs and
tests updated to match.

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Jungfraujoch

Application to receive data from the PSI JUNGFRAU and EIGER detectors.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.

S
Description
Jungfraujoch Data Acquisition System
Readme GPL-3.0
3 GiB
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