v1.0.0-rc.147 #57

Merged

leonarski_f merged 27 commits from 2506-rot-all into main

2026-06-02 11:49:25 +02:00

Author	SHA1	Message	Date
leonarski_f	6b46770934	CHANGELOG Build Packages / Unit tests (pull_request) Successful in 1h14m30s Details Build Packages / build:rpm (rocky8_nocuda) (pull_request) Successful in 7m37s Details Build Packages / build:rpm (rocky9_nocuda) (pull_request) Successful in 8m24s Details Build Packages / build:rpm (ubuntu2204_nocuda) (pull_request) Successful in 7m25s Details Build Packages / build:rpm (ubuntu2404_nocuda) (pull_request) Successful in 6m31s Details Build Packages / build:rpm (rocky8_sls9) (pull_request) Successful in 7m42s Details Build Packages / build:rpm (rocky9_sls9) (pull_request) Successful in 9m10s Details Build Packages / build:rpm (rocky8) (pull_request) Successful in 8m1s Details Build Packages / build:rpm (rocky9) (pull_request) Successful in 9m8s Details Build Packages / build:rpm (ubuntu2204) (pull_request) Successful in 7m37s Details Build Packages / build:rpm (ubuntu2404) (pull_request) Successful in 7m5s Details Build Packages / DIALS test (pull_request) Successful in 11m10s Details Build Packages / XDS test (durin plugin) (pull_request) Successful in 6m1s Details Build Packages / XDS test (JFJoch plugin) (pull_request) Successful in 5m56s Details Build Packages / XDS test (neggia plugin) (pull_request) Successful in 5m36s Details Build Packages / Generate python client (pull_request) Successful in 10s Details Build Packages / Build documentation (pull_request) Successful in 40s Details Build Packages / Create release (pull_request) Skipped Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 7m53s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 9m7s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 7m50s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 7m2s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 8m9s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 9m20s Details Build Packages / build:rpm (rocky8) (push) Successful in 8m18s Details Build Packages / build:rpm (rocky9) (push) Successful in 9m24s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 8m20s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 8m24s Details Build Packages / DIALS test (push) Successful in 11m40s Details Build Packages / XDS test (durin plugin) (push) Successful in 6m12s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m8s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m54s Details Build Packages / Generate python client (push) Successful in 16s Details Build Packages / Build documentation (push) Successful in 36s Details Build Packages / Create release (push) Skipped Details Build Packages / Unit tests (push) Successful in 43m11s Details	2026-06-02 11:47:07 +02:00
leonarski_f	06a3b57700	VERSION: 1.0.0-rc.147 Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m24s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m53s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m13s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m36s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m25s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m23s Details Build Packages / build:rpm (rocky8) (push) Successful in 12m15s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m41s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m15s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m33s Details Build Packages / DIALS test (push) Successful in 11m29s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m6s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 8m35s Details Build Packages / XDS test (neggia plugin) (push) Successful in 7m58s Details Build Packages / Generate python client (push) Successful in 25s Details Build Packages / Build documentation (push) Successful in 51s Details Build Packages / Create release (push) Skipped Details Build Packages / Unit tests (push) Successful in 1h34m22s Details	2026-06-02 10:15:08 +02:00
leonarski_f	aa9f5b1d1e	jfjoch_viewer: Reciprocal space viewer allows to digest the whole dataset.	2026-06-02 10:11:09 +02:00
leonarski_f	527d239d53	JFJOchReader: Add ReadAllSpots option to handle reading just spot finding result	2026-06-02 09:39:26 +02:00
leonarski_f	55b65381db	jfjoch_viewer: Pan with right click + center 000 button Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m5s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m34s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m10s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m18s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m35s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m30s Details Build Packages / build:rpm (rocky8) (push) Successful in 12m25s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m31s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m24s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m20s Details Build Packages / DIALS test (push) Successful in 11m13s Details Build Packages / XDS test (durin plugin) (push) Successful in 7m58s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 8m5s Details Build Packages / XDS test (neggia plugin) (push) Successful in 7m56s Details Build Packages / Generate python client (push) Successful in 24s Details Build Packages / Build documentation (push) Successful in 41s Details Build Packages / Create release (push) Skipped Details Build Packages / Unit tests (push) Successful in 45m14s Details	2026-06-01 13:28:16 +02:00
leonarski_f	60d0daabc2	jfjoch_viewer: Orthoscopic perspective to better see grid pattern	2026-06-01 13:22:19 +02:00
leonarski_f	bf94864af8	jfjoch_viewer: Work in progress reciprocal space viewer	2026-06-01 13:18:41 +02:00
leonarski_f	a2fd0a433f	jfjoch_viewer: Work in progress on reciprocal space viewer	2026-06-01 11:00:46 +02:00
leonarski_f	baeef1960e	JFJochViewerReciprocalSpaceWindow: OpenGL version, seems to work well Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m59s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m38s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 11m42s Details Build Packages / build:rpm (rocky8) (push) Successful in 12m20s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m28s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m41s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m42s Details Build Packages / XDS test (durin plugin) (push) Successful in 7m14s Details Build Packages / Generate python client (push) Successful in 37s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m25s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 45s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m58s Details Build Packages / XDS test (neggia plugin) (push) Successful in 8m8s Details Build Packages / build:rpm (rocky9) (push) Successful in 12m8s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 8m42s Details Build Packages / DIALS test (push) Successful in 11m20s Details Build Packages / Unit tests (push) Successful in 57m41s Details	2026-05-31 19:59:13 +02:00
leonarski_f	b66fa9e5c6	JFJochViewerReciprocalSpaceWindow: Works, but is very slow	2026-05-31 19:48:21 +02:00
leonarski_f	487ee4d25b	jfjoch_viewer: Reciprocal space viewer, first edition Build Packages / Unit tests (push) Failing after 16s Details Build Packages / DIALS test (push) Failing after 10s Details Build Packages / XDS test (durin plugin) (push) Successful in 6m58s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m21s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m32s Details Build Packages / Generate python client (push) Successful in 12s Details Build Packages / Build documentation (push) Successful in 42s Details Build Packages / Create release (push) Skipped Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m17s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m5s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m10s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m47s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m13s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m27s Details Build Packages / build:rpm (rocky9) (push) Successful in 13m36s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 14m6s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 7m25s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 6m25s Details	2026-05-30 13:13:53 +02:00
leonarski_f	7d1fa6401c	jfjoch_viewer: Cleaning user mask not dependent on selected ROI	2026-05-30 08:47:52 +02:00
leonarski_f	2251a44b1b	jfjoch_process: Works (more or less) Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m17s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m27s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 10m35s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 11m15s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m5s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 12m8s Details Build Packages / build:rpm (rocky8) (push) Successful in 10m6s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 9m42s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m4s Details Build Packages / Generate python client (push) Successful in 13s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m18s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 38s Details Build Packages / build:rpm (rocky9) (push) Successful in 10m58s Details Build Packages / DIALS test (push) Successful in 12m27s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 5m55s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m11s Details Build Packages / Unit tests (push) Successful in 57m24s Details	2026-05-29 20:27:13 +02:00
leonarski_f	33e9a368f6	jfjoch_tests: Fix lattice test with VDS HDF5 Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m37s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m20s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 11m37s Details Build Packages / build:rpm (rocky8) (push) Successful in 12m18s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m26s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m55s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m30s Details Build Packages / XDS test (durin plugin) (push) Successful in 7m48s Details Build Packages / Generate python client (push) Successful in 20s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m30s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 34s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m41s Details Build Packages / XDS test (neggia plugin) (push) Successful in 7m46s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 8m37s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m27s Details Build Packages / DIALS test (push) Successful in 11m36s Details Build Packages / Unit tests (push) Successful in 1h8m58s Details	2026-05-29 19:50:50 +02:00
leonarski_f	6c8b2d4ddd	jfjoch_process: Enable two-pass algorithm Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m23s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m48s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 10m51s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 11m16s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 11m27s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 12m48s Details Build Packages / build:rpm (rocky8) (push) Successful in 9m50s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m0s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m41s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m40s Details Build Packages / Generate python client (push) Successful in 13s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 37s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m31s Details Build Packages / DIALS test (push) Successful in 11m27s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m9s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m18s Details Build Packages / Unit tests (push) Failing after 56m14s Details	2026-05-29 17:22:53 +02:00
leonarski_f	40ae325995	IndexAndRefine: Dedicated function to add image to rotation indexer Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 9m17s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 11m50s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m54s Details Build Packages / build:rpm (rocky8) (push) Successful in 12m5s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 12m17s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m29s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 13m18s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 8m20s Details Build Packages / XDS test (neggia plugin) (push) Successful in 7m29s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m35s Details Build Packages / Create release (push) Skipped Details Build Packages / Generate python client (push) Successful in 14s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m15s Details Build Packages / build:rpm (rocky9) (push) Successful in 12m9s Details Build Packages / Build documentation (push) Successful in 38s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 10m10s Details Build Packages / DIALS test (push) Successful in 11m36s Details Build Packages / Unit tests (push) Failing after 1h8m51s Details	2026-05-29 16:56:18 +02:00
leonarski_f	caa38a9732	RotationIndexerCounter: Implement rotation indexing counting logic	2026-05-29 16:54:00 +02:00
leonarski_f	7b20eedcbd	RotationIndexer: Remove logic controlling image accumulation	2026-05-29 16:27:22 +02:00
leonarski_f	e3924a08dd	RotationIndexer: Add GetAccumulatedImages() - though not sure if really useful	2026-05-29 16:09:35 +02:00
leonarski_f	0e4d80acd6	RotationIndexer: Add limit on spot count per image (not global), to enable fair-share of images + limit maximum number of images (there is no real benefit of going above 100 images in this model) Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 7m32s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 8m14s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 8m43s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 9m54s Details Build Packages / build:rpm (rocky8) (push) Successful in 7m40s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 7m36s Details Build Packages / build:rpm (rocky9) (push) Successful in 8m53s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m15s Details Build Packages / XDS test (durin plugin) (push) Successful in 5m47s Details Build Packages / Generate python client (push) Successful in 10s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m34s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 34s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m1s Details Build Packages / DIALS test (push) Successful in 9m7s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 28m53s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 49m12s Details Build Packages / Unit tests (push) Failing after 52m52s Details	2026-05-29 15:24:23 +02:00
leonarski_f	4674aff202	jfjoch_test: Fix JFJochReader_NiggliClass_VDS	2026-05-29 15:03:58 +02:00
leonarski_f	4b609a6e06	RotationIndexer: Separate ProcessImage and GetLattice	2026-05-29 14:58:53 +02:00
leonarski_f	a6f61b0d8a	CMake: In debug mode JFJochVersion needs to be explicitly PIC to link with the plugin Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 8m20s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m54s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 10m48s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 11m2s Details Build Packages / build:rpm (rocky8) (push) Successful in 10m5s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 11m53s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 8m10s Details Build Packages / build:rpm (rocky9) (push) Successful in 9m50s Details Build Packages / Generate python client (push) Successful in 12s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 6m45s Details Build Packages / Create release (push) Skipped Details Build Packages / Build documentation (push) Successful in 37s Details Build Packages / DIALS test (push) Successful in 9m57s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 21m23s Details Build Packages / XDS test (neggia plugin) (push) Successful in 5m8s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 24m46s Details Build Packages / Unit tests (push) Failing after 53m23s Details Build Packages / XDS test (durin plugin) (push) Successful in 1h33m8s Details	2026-05-29 14:20:10 +02:00
leonarski_f	07d7174eff	XtalOptimizer: Accept std::vector<std::vector<SpotToSave>> for spots input, to distinguish spots between different images	2026-05-29 14:19:47 +02:00
leonarski_f	8660558341	JFJochHDF5Reader: Use lattice, and not Niggli class, to decode symmetry (if symmetry is imposed, then lattice search returns niggli class 0 Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 7m59s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m3s Details Build Packages / build:rpm (rocky8) (push) Successful in 9m43s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 10m4s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 10m41s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 9m58s Details Build Packages / XDS test (durin plugin) (push) Successful in 8m12s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m28s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 19m25s Details Build Packages / build:rpm (rocky9) (push) Successful in 11m27s Details Build Packages / Create release (push) Skipped Details Build Packages / Generate python client (push) Successful in 21s Details Build Packages / Build documentation (push) Successful in 38s Details Build Packages / DIALS test (push) Successful in 11m36s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 5m29s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 28m47s Details Build Packages / XDS test (neggia plugin) (push) Successful in 14m21s Details Build Packages / Unit tests (push) Failing after 52m8s Details	2026-05-29 12:23:26 +02:00
leonarski_f	b44b0a56fb	RotationIndexer: For fixed space group, set explicitly lattice type and centering for refinement	2026-05-29 12:01:58 +02:00
leonarski_f	56764a948b	JFJochHDF5Reader: Read spots for one image Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 8m7s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m8s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 9m22s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 9m25s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 9m42s Details Build Packages / build:rpm (rocky8) (push) Successful in 7m59s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 7m38s Details Build Packages / build:rpm (rocky9) (push) Successful in 8m28s Details Build Packages / XDS test (durin plugin) (push) Successful in 5m31s Details Build Packages / XDS test (JFJoch plugin) (push) Successful in 5m6s Details Build Packages / Generate python client (push) Successful in 12s Details Build Packages / Build documentation (push) Successful in 32s Details Build Packages / Create release (push) Skipped Details Build Packages / DIALS test (push) Successful in 8m10s Details Build Packages / XDS test (neggia plugin) (push) Successful in 19m49s Details Build Packages / Unit tests (push) Successful in 58m19s Details Build Packages / build:rpm (rocky9_sls9) (push) Successful in 1h19m6s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 1h56m2s Details	2026-05-28 22:04:17 +02:00

v1.0.0-rc.147 #57

27 Commits