Commit Graph
35 Commits
Author SHA1 Message Date
jungfrauandClaude Opus 5 5ee0f22a61 Build the detector's lookup tables once, not once per worker
The image loop gives every worker its own analysis engine, so a run builds ninety-six of them. Each
one derived, from scratch, tables that are the same in all of them: the byte-per-pixel mask, the
resolution mask, the radial kernel, and the checksum that names the shared device tables.

The checksum was the worst of it, because it is part of the cache KEY and so is computed before the
lookup - a hit still hashed the whole table. On a 16 Mpx detector that is the bin table, the
corrections and the mask, 126 MB an engine, about twelve gigabytes over a run, to answer a question
whose answer had not changed. The header said it cost nothing measurable; a profile says otherwise,
and says it is worst exactly during the ramp when the machine has nothing else to do.

It cannot simply be remembered against the address, which is what it exists to catch: a buffer can
be freed and another allocated where it was, and the cache would then hand back a device copy of
something else. So the owner of the bytes computes it instead. The azimuthal mapping writes its two
tables in its constructor and never again. The pixel mask re-derives its binary form and its
checksum on every path that changes the mask, and all of those paths are now private to the class.
The key therefore still describes the bytes as they are at the moment of the lookup.

The resolution mask was two passes over every pixel - a float comparison into a vector<bool>, then a
bit-by-bit repack - in each of the ninety-six. It is one pass now, writing the packed form directly,
built once for the limits asked for and handed out as a shared pointer so a worker keeps the mask it
was given. The radial kernel is cached on the six numbers it is derived from.

Nothing computes a different value; only who computes it changes. Byte-identical merged output on a
16 Mpx set and on a small one.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_011n8riB6X59oRjkrSHzNPAU
2026-08-23 12:59:58 -04:00
leonarski_fandClaude Opus 5 83b33e19ee Give each FFT direction a block and its histogram shared memory
Cherry-picked from 2608-performance, restricted to the indexer: the same commit there also hoists a
reciprocal out of a loop in the scaling code, which is not being touched on this branch.

The histogram bins are unsigned integers and the counts stay below 2^24, so they convert to float
exactly - the vote is bit-identical, and the indexing result with it.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01VfYvJT5Nb71suJCowRBn5z
2026-08-23 13:12:49 +02:00
jungfrauandClaude Opus 5 20ef59205b Build the GPU engines a worker never uses on first use, not always
Every worker thread built a full set of analysis engines. Two of them are never
asked for on the offline path: the fixed-threshold spot finder, because
detection is adaptive by default, and the azimuthal integrator, because the
fused adaptive finder produces the profile as a by-product. They are still
needed elsewhere - the broker defaults to non-adaptive detection, and
--no-adaptive-spots asks for the finder - so they are built on first use rather
than removed. A lazily built finder takes the current resolution mask on
construction; without that it would find spots outside the limits it was never
told about.

The bitshuffle decoder sized its output buffer for the widest pixel type there
is rather than the one the images actually have, holding a second full frame per
worker on 16-bit data. It is sized from the image now and grows if a later frame
needs more.

The shared-table checksum runs over eight interleaved lanes. FNV's multiply is a
loop-carried dependency, so one chain retires a byte every few cycles whatever
memory bandwidth is spare, and every worker hashes tens of megabytes of geometry
tables as it builds its engines - about 5% of all CPU samples on a 16M-pixel
detector.

Measured on a 16M-pixel rotation dataset: cudaMalloc 11314 -> 9474 calls and,
with cudaFree, 117 s -> 78 s of aggregate thread time; both synchronise the
whole device, so that time is spent blocking every other worker. Whole battery
15m32s -> 12m30s.

Data quality against main, over 24 crystals and eight statistics each: the same
space group on all 24, and every difference smaller than what two runs of an
IDENTICAL binary produce (measured: 13 of 24 crystals reproduce exactly run to
run, worst R_meas swing 5.5 points, against 4.6 points for main vs this branch).
The float atomics in the reductions have always made this so.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-23 13:12:36 +02:00
jungfrauandClaude Opus 5 670831bad4 Stop allocating GPU and pinned memory nothing reads
Three resource fixes and two latent bugs, none of which changes a computed
number.

The preprocessed image has a host copy that only a CPU engine ever reads. On
the GPU path every engine reads the device buffer instead, and rugnux always
runs the fused adaptive finder, so that host copy is allocated, zeroed and
PAGE-LOCKED for nothing - 72 MB per worker, 3.5 GB over 48 of them, and a
cudaHostRegister each, which the driver serializes. It is now skipped by the
same condition that already decides whether the device copies the image back.
ImagePreprocessorBuffer keeps the pixel count separately so size() still
answers when the mirror was not allocated.

ROIIntegrationGPU asked device 0 for the SM count it sizes its grid from, while
workers are pinned round-robin across the GPUs - so on a multi-GPU node it
could size a grid from a card it never launches on. It asks the current device
now, like every other engine.

~CudaRegisteredVector called a function that throws out of a destructor, and
the move-assignment did the same from a noexcept function. Either would abort
the process rather than report the failure, and teardown - after a device
reset, or while another exception unwinds - is exactly where cudaHostUnregister
fails. Both now use an unchecked unregister, as every other destructor in that
header already does for its own teardown call. The throwing form stays for
rebind()/unregister(), which are called from live code.

Measured on a 16M-pixel rotation dataset: unchanged space group, merged
reflection count and merging statistics.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-08-23 13:12:36 +02:00
leonarski_f 538f3504d3 v1.0.0.rc-161 (#71)
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* **rugnux: significantly better quality of results, and faster.** A large rework of integration, scaling, merging, geometry refinement and space-group determination, together with measurements the program previously made no attempt at - the direct beam before indexing, the beam stop, the goniometer rotation scale, and the stretches of a sweep the crystal did not deliver. A rotation dataset typically gains observations at better <I/sigma> and R_meas, and every `mx` and `scale` run writes a `<prefix>_report.txt` results report modelled on XDS's `CORRECT.LP`. Many defaults moved with it: spot detection is self-calibrating, beam-stop detection and rotation geometry post-refinement are on, resolution limits default to as far as the detector reaches, and ice-ring handling engages only where the crystal is measured to have ice.
* **jfjoch_viewer:** the beam-stop shadow, the detector calibration and the beam-centre measurement are reachable from "Analyze dataset"; the settings panel reports how the sample moved and how polarized the beam was; image rendering and interaction are faster.
* **Performance:** bitshuffle+LZ4 images are decoded on the GPU rather than on the host, with the bitshuffle inverse fused into preprocessing so the decompressed frame is never held in device memory.
* **Broker, writer, packaging and build:** image-slot lifetime and locking fixes, per-image datasets sized by the images actually written, the Debian/Ubuntu broker package renamed to `jfjoch`, and `image_analysis` compiling under MSVC again.

**Breaking change to the rugnux command line:**
* `--azint-only` and `--scale` are **removed**, replaced by `--mode azint` and `--mode scale`; the full pipeline is `--mode mx` and remains the default. A script passing the old flags now fails with the list of valid modes rather than silently running the wrong one.
* `-t`/`--stride` is **refused on rotation data**: skipping frames cuts every reflection's rocking curve, so the combined fulls and their partiality would be measured over frames the sweep never recorded. Select a contiguous range with `-s`/`-e` instead. `--mode azint` and `--force-still` still take a stride.

**Breaking changes to OpenAPI** - regenerate the client (`jfjoch-client` 1.0.0-rc.161, `frontend/src/client`) or read the affected fields as optional:
* `image_scale_b` is removed from the `plot_type` enum, so a client requesting that plot now gets an error rather than a curve.
* `azim_int_settings.high_q_recipA`, `spot_finding_settings.high_resolution_limit` and `spot_finding_settings.low_resolution_limit` are no longer `required`. All three mean "no limit at that end" when unset and are omitted from the response instead of carrying a placeholder value, which raises in a client generated from an rc.160-or-earlier spec. A value of 0 is still accepted and means the same thing.

**Breaking changes to the stored formats** - a consumer reading these fields must treat them as optional:
* The per-image image-scale B factor is no longer computed, so `/entry/MX/imageScaleBFactor` is absent from newly written HDF5 files and the corresponding key is absent from the CBOR DataMessage and END blocks. Files written by rc.160 and earlier still contain it and still open; nothing in the pipeline reads it any more.
* `_reflns.jfjoch_diffrn_ISa` now carries the whole-range `1/sqrt(a*b)` that XDS's ISa denotes, and the error-model `a` and `b` are reported in XDS's convention; the strong-reflection asymptote moves to `_reflns.jfjoch_diffrn_ISa_asymptotic`. **A file written by an earlier version carries the asymptote under the plain `ISa` name.**

Reviewed-on: #71
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-08-13 17:03:10 +02:00
leonarski_f 67dca388bd v1.0.0-rc.160 (#70)
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* rugnux: Add `--model model.pdb` - score the merged data against an atomic model and compute initial maps. It reports R-work/R-free (scaling the model to the observed amplitudes with an overall scale, an anisotropic B and a flat bulk solvent - the standard few-parameter model, so a batch of maps stays directly comparable) and writes 2Fo-Fc / Fo-Fc electron-density maps (CCP4) plus a map-coefficient MTZ. The structure itself is not refined; the model is only re-fractionalised into the data cell.
* rugnux: The merged reflection output now carries French-Wilson amplitudes (|F| and its sigma) next to the intensities - MTZ `F`/`SIGF`, mmCIF `_refln.F_meas_au`, and the text HKL - computed with the correct centric/acentric Wilson prior and epsilon multiplicity, so a downstream program (e.g. phenix.refine) can refine against amplitudes. The intensity columns are unchanged.
* rugnux: R-free test-set flags are now assigned deterministically and consistently across symmetry - a Bijvoet pair I(+)/I(-) is never split between the work and free sets, and the assignment is a reproducible per-hkl hash that depends only on the reflection index, so every dataset of one crystal form gets the same ~5% free set (what a multi-dataset campaign such as PanDDA needs). On small data the fraction is floored so the test set stays large enough for a stable R-free (~500 reflections, capped at 10%); it stays flat at 5% on ordinary data. When a reference MTZ carries a `FreeR_flag` column its test set is imported instead, letting a whole campaign inherit one shared free set.
* rugnux: A reference MTZ (`--reference-mtz`) can now fix the space group and cell for rotation data too (previously rejected), without being used to scale - the rotation merge stays self-consistent. When the crystal has an indexing (merohedral) ambiguity - a lattice symmetry higher than its Laue symmetry, e.g. P3/P4/P6/C2 - the reference also resolves it: each candidate reindexing (identity plus the twin-law cosets of the metric symmetry) is scored by its intensity correlation against the reference and the data are re-merged in the best-correlating one. This is a metric-preserving relabelling of hkl (the cell is unchanged) and a no-op for a holohedral crystal such as lysozyme.
* rugnux: `--model` validation now aligns the data to the model before scoring - the observed reflections are reindexed into the model's enantiomorph when the two differ only by hand (indistinguishable from merged intensities). A merohedral indexing ambiguity is resolved against the reference MTZ when one is given (so a whole campaign shares one indexing convention); only with a model and no reference does validation fall back to fitting each candidate reindexing and keeping the lowest R-free.
* rugnux: De-novo symmetry - recover a genuine high-symmetry group whose data are imperfectly scaled. Such a merge's within-orbit chi² lands just past the self-consistency bound (each real symmetry step adds a little systematic scatter), right where a merohedral twin also lands, so the chi² ratio alone cannot separate them. The candidate is now rescued when the extra intensity-proportional systematic error it invokes stays small relative to the confirmed subgroup - a genuine symmetry step gains multiplicity without inflating the merge error model's b, whereas a twin forces non-equivalent reflections together and b balloons. Fixes cubic insulin (I23 instead of I222) with no change to any other crystal in the test battery, including the twins that must stay in their lower symmetry.
* Docs: Document the French-Wilson amplitude estimation, R-free flagging, reference-based space-group/ambiguity resolution, and model-based validation/maps in CPU_DATA_ANALYSIS.md.
* Frontend: The status-bar pill now shows a progress bar during detector calibration (previously only during measurement), and the calibration state and its button are labelled "Calibration"/"CALIBRATE" (the internal `Pedestal` state name is unchanged for back-compatibility).Reviewed-on: #70

Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-07-19 09:39:28 +02:00
leonarski_f 54c0100e8e v1.0.0-rc.157 (#67)
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* rugnux: Rebrand the offline data-processing subsystem as `rugnux` and consolidate all offline analysis into the single `rugnux` binary - `jfjoch_process` is now `rugnux`, the former `jfjoch_azint` is now `rugnux --azint-only`, and `jfjoch_scale` is now `rugnux --scale` (see the new docs/NAMING.md and docs/RUGNUX.md). Scaling and merging are on by default for rotation and stills (`--no-merge` disables them), replacing the previous opt-in `-M, --scale-merge`.
* rugnux: CLI fixes - default `-N` to all hardware threads, parse numeric option arguments strictly (reject non-numeric or trailing input instead of silently yielding 0), require `--wavelength > 0`, and correct the reproduced command line and `--scale` reference-cell handling.
* rugnux: De-novo space-group improvements - recover genuine high symmetry and centred Bravais lattices from intensities, add an automatic CC1/2 high-resolution cutoff, and report L-test twinning statistics.
* rugnux: Index weakly-diffracting low-resolution rotation data that previously failed (e.g. F-cubic crystals that diffract only to ~4 A on a detector reaching ~1.5 A). The per-frame indexing gate now measures the indexed fraction only within the resolution range the lattice actually diffracts to, so the many sub-diffraction ice/noise spots no longer make the fraction floor unreachable; the two-pass first pass tries several image-sampling schemes (spread across the whole rotation vs a consecutive wedge whose native stride keeps a reflection's rocking curve continuous, letting the FFT resolve a long axis) and keeps the one that indexes the most frames; and the de-novo space-group search no longer discards all reflections (and crashes) when every resolution shell falls below <I/sigma> = 1.
* rugnux: Lower the low-resolution R-meas for strongly-diffracting rotation data - drop edge-of-sweep truncated fulls whose rocking curve was captured below `--min-captured-fraction` (default 0.7 for rotation), and report R-meas only over the observations kept by outlier rejection (matching XDS). The 0.7 default also strips the partiality-extrapolated fulls that dominate the intensity second moment on weakly-diffracting crystals, so the de-novo space-group search is no longer starved by the error-model I/sigma floor and recovers the correct symmetry (e.g. the F-cubic Benas crystals: Benas_3 -> F432, Benas_7 -> P6122, instead of P4/P1); on the reference battery every other crystal keeps its space group.
* rugnux: Write the refined geometry (beam, tilt, axis) to _process.h5 and place non-standard mmCIF items under a reserved `jfjoch` prefix.
* jfjoch_broker: Ordinary acquisition failures (receiver/writer/analysis problems, missed packets, writer disconnect) now return to the Idle state with an Error-severity message, so a run can be retried without an expensive re-initialisation; only failures that leave the detector in an undefined state (new JFJochCriticalException, e.g. PCIe/FPGA faults) go to the Error state and force re-initialisation.
* jfjoch_broker: A synchronous /start now reports its failure to the HTTP caller instead of returning HTTP 200, and an incomplete or truncated dataset (missing packets, writer disconnect) is reported as an error rather than a "reduce frame rate" warning.
* jfjoch_broker: Drop uncollected placeholder rows (number = -1) from the scan_result REST endpoint.
* jfjoch_broker: Fix the inverted per-image compression ratio reported by the Lite receiver (was compressed/uncompressed instead of uncompressed/compressed).
* jfjoch_broker: Bragg integration adds a quantization-noise variance floor with a box-sum fallback, and treats the type-maximum marker as an invalid pixel for unsigned image types.
* jfjoch_writer: Detect file-overwrite conflicts at start for back-channel transports, and reset the writer when end-of-collection finalisation fails.
* jfjoch_viewer: Preview overlays follow the geometry (resolution/ROI arcs, true beam centre, predictions, coral secondary-lattice spots, legend), add save-as-JPEG, and fix an HTTP live-follow memory leak.
* Frontend: Improved aesthetics and usability, and added in-browser pixel-mask and JUNGFRAU-pedestal visualisation.
* CI: Name the Windows installer jfjoch-viewer-* instead of jfjoch-*.Reviewed-on: #67

Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-07-11 07:19:11 +02:00
leonarski_f d6389e12da v1.0.0-rc.156 (#66)
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* jfjoch_process: Major rotation (rot3d) data processing overhaul - robust profile-fit integration, Cauchy-loss scaling with optional absorption surface, de-novo indexing and space-group/centering determination fixes, and merging statistics + ISa in the mmCIF output.
* jfjoch_process: Add EXPERIMENTAL ice-ring detection (--detect-ice-rings) that excludes ice reflections from scaling.
* Compression: Add BSHUF_ZSTD_RLE_HUFF, make compression size-aware (drop frames that don't fit rather than aborting), and add the jfjoch_recompress tool.
* jfjoch_viewer: Report "Multiple lattices detected" and grey out "Analyze dataset" on a live connection.
* jfjoch_broker: Write smargon chi/phi goniometer positions to NXmx; read sensor thickness/material from HDF5 metadata.
* CI: Build Windows (CUDA and non-CUDA) installers.Reviewed-on: #66

Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-07-03 19:18:56 +02:00
leonarski_f 75e401f0e5 v1.0.0-rc.153 (#63)
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This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use.

* jfjoch_broker: Add EXPERIMENTAL pixelrefine mode for image processing
* jfjoch_broker: Allow to load user mask from 8-bit and 16-bit TIFF files
* jfjoch_broker: Add ROI calculation in non-FPGA workflow
* jfjoch_broker: Fixes to TCP image pusher
* jfjoch_broker: Remove NUMA bindings
* jfjoch_broker: Improvements to indexing
* jfjoch_broker: For PSI EIGER, trimming energies are taken from the detector configuration (now compulsory) instead of hardcoded values
* jfjoch_writer: Save ROI definitions and the per-pixel ROI bitmap in the master file; azimuthal ROIs support phi (angular) sectors
* jfjoch_viewer: Major redesign with dockable panels and saved layouts, plus on-canvas creation/move/resize of box, circle and azimuthal ROIs
* jfjoch_viewer: Run jfjoch_process reprocessing jobs from inside the GUI and overlay per-run results

Reviewed-on: #63
2026-06-23 20:29:49 +02:00
leonarski_f cc3eb8352c v1.0.0-rc.148 (#58)
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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.

* jfjoch_broker: Improve azimuthal integration (add <I^2> calculation)
* jfjoch_broker: Fixes around indexing, aiming to handle multi-lattice crystals (work in progress, it is not fully integrated)
* jfjoch_writer: Save mean(I), stddev(I), and count(I) for each azimuthal bin

Reviewed-on: #58
2026-06-08 08:30:35 +02:00
leonarski_f 87fde1b32e v1.0.0-rc.142 (#52)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* Support for newer CUDA architectures (notably Blackwell); minimum CUDA version 12.8
* Minor changes to jfjoch_process, jfjoch_fpga_test and jfjoch_lite_perf_test to make them more consistent

Reviewed-on: #52
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-04-30 16:47:53 +02:00
leonarski_f 239a441ee6 v1.0.0-rc.140 (#50)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* jfjoch_broker: For DECTRIS detectors, ZeroMQ link is persistent, to save time for establishing new connection
* jfjoch_broker: Minor bug fixes for rare conditions

Reviewed-on: #50
2026-04-29 21:40:22 +02:00
leonarski_f 4878318c27 v1.0.0-rc.139 (#49)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* jfjoch_broker: Further reduce startup time for DECTRIS detectors by selectively modifying SIMPLON parameters on `/start`
* jfjoch_broker: Further reduce startup time for DECTRIS detectors by not setting beam center and detector distance via SIMPLON API on '/start'
* jfjoch_broker: Add an extra message to ZeroMQ puller ready to monitor Lite worklow preparation time
* jfjoch_broker: Image buffer configuration is postponed for Lite receiver flow till start message is received
* jfjoch_broker: Use nanoseconds internally for frame/image/readout time
* jfjoch_broker: Extra messages added for receiver operation (to be removed after debugging finished)
* jfojch_broker: Improve profiling of different data analysis steps
* jfjoch_broker: Record integration reflection count
* jfjoch_broker: Fix bug where ZeroMQ preview frequency was confusing time units (micro vs. milliseconds)
* jfjoch_broker: Fix bug where '/wait_till_done' got deadlocked
* jfjoch_writer: Fix confusion between NaN and zero in floating-point datasets

**Breaking changes**: detector definition is now using nanoseconds to define minimum frame time, minimum count time and readout time.

Reviewed-on: #49
2026-04-29 09:50:50 +02:00
leonarski_f c1c170112c v1.0.0-rc.136 (#45)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* jfjoch_broker: Improve logic regarding indexing architecture and thread pools (work in progress).

Reviewed-on: #45
2026-04-20 11:54:33 +02:00
leonarski_f 6133da1377 v1.0.0-rc.133
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* jfjoch_broker: Use httplib for HTTP server instead of Pistache
* jfjoch_broker: Drop OpenSSL support
* jfjoch_broker: Base work for multi-lattice support in the future
* Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib)

Reviewed-on: #41
2026-03-26 20:50:33 +01:00
leonarski_f 1ab257af6c v1.0.0-rc.125 (#32)
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This is an UNSTABLE release. This version adds scalign and merging. These are experimental at the moment, and should not be used for production analysis.
If things go wrong with analysis, it is better to revert to 1.0.0-rc.124.

* jfjoch_broker: Improve logic on switching on/off spot finding
* jfjoch_broker: Increase maximum spot count for FFBIDX to 65536
* jfjoch_broker: Increase default maximum unit cell for FFT to 500 A (could have performance impact, TBD)
* jfjoch_process: Add scalign and merging functionality - program is experimental at the moment and should not be used for production analysis
* jfjoch_viewer: Display partiality and reciprocal Lorentz-polarization correction for each reflection
* jfjoch_writer: Save more information about each reflection

Reviewed-on: #32
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-02-18 16:17:21 +01:00
leonarski_f 07fe4dd3bb v1.0.0-rc.124 (#31)
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them,
especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123.

* jfjoch_broker: Improve refection position prediction and Bragg integration code.
* jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation.
* jfjoch_writer: Fix saving mosaicity properly in HDF5 file.
* jfjoch_viewer: Introduce high-dynamic range mode for images
* jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%)
* jfjoch_viewer: Zoom-in numbers have better readability

Reviewed-on: #31
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2026-02-01 13:29:33 +01:00
leonarski_f 27496b8207 v1.0.0-rc.122 (#29)
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This is an UNSTABLE release.

* jfjoch_broker: Add thresholding to prefer shorter vectors after FFT
* jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress)
* jfjoch_viewer: Display file opening errors
* jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available

Reviewed-on: #29
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2025-12-16 15:27:40 +01:00
leonarski_f 06949caf1a v1.0.0-rc.112 (#18)
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This is an UNSTABLE release and not recommended for production use (please use rc.11 instead).

* jfjoch_broker: Experimental rotation (3D) indexing
* jfjoch_broker: Minor fix to error in optimizer potentially returning NaN values

Reviewed-on: #18
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2025-11-30 17:39:22 +01:00
leonarski_f f44c6520a8 v1.0.0-rc.107 (#12)
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This is an UNSTABLE release.

* jfjoch_viewer: Minor polishing of new functionality
* jfjoch_broker: User NaN for empty azimuthal bins

Reviewed-on: #12
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
2025-11-24 07:07:32 +01:00
leonarski_f b2abb0f92b v1.0.0-rc.94 2025-10-25 22:05:47 +02:00
leonarski_f 061152279c v1.0.0-rc.91 2025-10-20 20:43:44 +02:00
leonarski_f c0bd8e1215 v1.0.0-rc.82 2025-09-22 19:49:39 +02:00
leonarski_f 5d9d2de4a4 v1.0.0-rc.81 2025-09-21 19:27:51 +02:00
leonarski_f 20cd8dc4ac v1.0.0-rc.76 2025-09-11 14:37:16 +02:00
leonarski_f c936e9bab7 v1.0.0-rc.74 2025-09-10 12:33:39 +02:00
leonarski_f c67337cfe1 v1.0.0-rc.72 2025-09-08 20:28:59 +02:00
leonarski_f bb32f27635 v1.0.0-rc.70 2025-08-27 06:21:10 +02:00
leonarski_f 20973792e4 v1.0.0-rc.68 2025-08-16 19:59:27 +02:00
leonarski_f 51cbef4c84 1.0.0-rc.66 2025-07-18 11:42:39 +02:00
leonarski_f e4ec9fb38f v1.0.0-rc.61 2025-07-08 07:16:59 +02:00
leonarski_f fbaf15aa07 v1.0.0-rc.60 2025-07-05 18:52:42 +02:00
leonarski_f 0d1b388f4d v1.0.0-rc.50 2025-06-20 09:52:26 +02:00
leonarski_f 41a3e671f4 v1.0.0-rc.41 2025-06-10 18:14:04 +02:00
leonarski_f 53c90ee5d8 v1.0.0-rc.40 2025-05-28 18:49:27 +02:00