Jungfraujoch

Author	SHA1	Message	Date
Filip Leonarski	ec3419eb7f	jfjoch_extract_hkl: Work in progress	2026-01-22 11:53:58 +01:00
Filip Leonarski	688729f979	BraggIntegrate: Lorentz-Polarization correction consistent (roughly) with XDS	2026-01-22 11:53:46 +01:00
Filip Leonarski	4e6b9c960f	CBOR/HDF5: Save Lorentz-Polarization correction for reflections	2026-01-21 16:39:13 +01:00
Filip Leonarski	acea94552f	jfjoch_extract_hkl: Work in progress -- CC calculation	2026-01-21 13:47:56 +01:00
Filip Leonarski	d47db38c12	jfjoch_extract_hkl: Work in progress (early)	2026-01-21 10:17:37 +01:00
Filip Leonarski	353980f807	jfjoch_extract_hkl: Simple summation of reflections for rotation scan	2026-01-21 09:39:44 +01:00
Filip Leonarski	523afc7fbb	IndexAndRefine: Fix using lattice at zero deg for refinement All checks were successful Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 12m3s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m58s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m21s Details Build Packages / Generate python client (push) Successful in 29s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m33s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8) (push) Successful in 13m53s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m0s Details Build Packages / Build documentation (push) Successful in 43s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m10s Details Build Packages / build:rpm (rocky9) (push) Successful in 15m7s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m23s Details Build Packages / Unit tests (push) Successful in 53m10s Details	2026-01-20 13:28:42 +01:00
Filip Leonarski	e5450a2800	IndexAndRefine: Minor change in sign...tbd how it should go	2026-01-20 13:08:13 +01:00
Filip Leonarski	9e01f73cd4	BraggPredictionRotation: Work in progress	2026-01-20 13:07:14 +01:00
Filip Leonarski	2e29834fb8	IndexAndRefine: Stabilize profile radius and mosaicity, by using moving average	2026-01-20 11:20:35 +01:00
Filip Leonarski	f269a007cf	jfjoch_test: Adjust expected precision - changed way of calculating residual - will work worse on "ideal" data, but should be more outlier safe. To be seen. All checks were successful Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 11m58s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m57s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m19s Details Build Packages / Generate python client (push) Successful in 29s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m50s Details Build Packages / Build documentation (push) Successful in 40s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8) (push) Successful in 14m9s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m24s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m18s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m23s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m27s Details Build Packages / Unit tests (push) Successful in 53m9s Details	2026-01-20 10:34:32 +01:00
Filip Leonarski	87eaeb9d7e	jfjoch_process: Add resolution Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 11m5s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m46s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m48s Details Build Packages / Generate python client (push) Successful in 34s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m29s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m41s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 54s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m57s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m25s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m53s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m28s Details Build Packages / Unit tests (push) Failing after 54m17s Details	2026-01-20 09:08:01 +01:00
Filip Leonarski	3a5f10708f	RotationIndexer: Refine detector angles	2026-01-20 08:59:13 +01:00
Filip Leonarski	7a24c6b498	XtalOptimizer: Use robust loss function (Cauchy) for least squares	2026-01-20 08:58:26 +01:00
Filip Leonarski	48d2ed3c06	jfjoch_process: A bit more options Some checks failed Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 3m9s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m16s Details Build Packages / Generate python client (push) Successful in 35s Details Build Packages / Build documentation (push) Successful in 58s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m0s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m5s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m3s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 13m27s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m29s Details Build Packages / build:rpm (rocky9) (push) Successful in 13m54s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 12m4s Details Build Packages / Unit tests (push) Successful in 53m24s Details	2026-01-19 21:34:05 +01:00
Filip Leonarski	94f3306c98	jfjoch_process: Add compression	2026-01-19 21:21:47 +01:00
Filip Leonarski	fd75e088db	CreateBraggPrediction: No rotation for now All checks were successful Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 7m46s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m9s Details Build Packages / Generate python client (push) Successful in 32s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 9m42s Details Build Packages / Build documentation (push) Successful in 53s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 10m34s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m48s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m1s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 14m0s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m34s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 9m24s Details Build Packages / Unit tests (push) Successful in 54m42s Details	2026-01-19 14:00:02 +01:00
Filip Leonarski	87f5daba24	IndexAndRefine: Generate predictions based on refined geometry Some checks failed Build Packages / build:rpm (ubuntu2404) (push) Has been cancelled Details Build Packages / Generate python client (push) Has been cancelled Details Build Packages / Build documentation (push) Has been cancelled Details Build Packages / build:rpm (ubuntu2204) (push) Has been cancelled Details Build Packages / Unit tests (push) Has been cancelled Details Build Packages / Create release (push) Has been cancelled Details Build Packages / build:rpm (rocky9) (push) Has been cancelled Details Build Packages / build:rpm (rocky8) (push) Has been cancelled Details Build Packages / build:rpm (rocky8_sls9) (push) Has been cancelled Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Has been cancelled Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Has been cancelled Details Build Packages / build:rpm (rocky9_nocuda) (push) Has been cancelled Details Build Packages / build:rpm (rocky8_nocuda) (push) Has been cancelled Details	2026-01-19 13:56:42 +01:00
Filip Leonarski	8f452f8c56	RotationIndexer: Remove SetLattice() - not sure why it was necessary in the first place	2026-01-19 13:56:28 +01:00
Filip Leonarski	e02e85cedb	jfjoch_process: Use single IndexAndRefine instance	2026-01-19 13:55:30 +01:00
Filip Leonarski	e7b0ecb012	IndexAndRefine: Use "standard predictor", just with rotated axis Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Failing after 10m37s Details Build Packages / build:rpm (rocky8) (push) Failing after 11m34s Details Build Packages / Generate python client (push) Successful in 33s Details Build Packages / build:rpm (rocky8_nocuda) (push) Failing after 12m27s Details Build Packages / build:rpm (rocky8_sls9) (push) Failing after 12m40s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 12m53s Details Build Packages / build:rpm (rocky9) (push) Failing after 12m48s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Failing after 13m2s Details Build Packages / Build documentation (push) Successful in 49s Details Build Packages / build:rpm (ubuntu2204) (push) Failing after 12m56s Details Build Packages / build:rpm (ubuntu2404) (push) Failing after 6m49s Details Build Packages / Unit tests (push) Has been cancelled Details	2026-01-19 13:06:23 +01:00
Filip Leonarski	04d497694b	MXAnalysis: Generate rotation prediction properly	2026-01-19 12:10:08 +01:00
Filip Leonarski	d4879635a3	jfjoch_process: Clean previous image information (to be optimized) + option to run rotation indexing	2026-01-19 12:09:40 +01:00
Filip Leonarski	fdee404335	DiffractionExperiment: Add option to check if rotation indexing is enabled (goniometer present + rotation indexing)	2026-01-19 11:57:16 +01:00
Filip Leonarski	15fa0520b9	jfjoch_process: Overwrite output files	2026-01-19 11:56:43 +01:00
Filip Leonarski	a0ae935b09	jfjoch_process: Handle pixel mask correctly in jfjoch_process	2026-01-19 11:34:44 +01:00
Filip Leonarski	a87652b896	HDF5: Minor fixes to supress errors and use common mutex for reading and writing All checks were successful Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 12m25s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m27s Details Build Packages / Generate python client (push) Successful in 20s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m54s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m51s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m4s Details Build Packages / build:rpm (rocky8) (push) Successful in 14m7s Details Build Packages / Build documentation (push) Successful in 36s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m59s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m54s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m16s Details Build Packages / Unit tests (push) Successful in 53m53s Details	2026-01-11 16:00:38 +01:00
Filip Leonarski	bb89f2b641	jfjoch_process: First iteration	2026-01-11 15:17:41 +01:00
Filip Leonarski	a04f64ccaa	BraggPredictionRotation: Minor fixes to improve readability	2026-01-03 15:04:35 +01:00
Filip Leonarski	f4af12ffb7	BraggPrediction: Minor improvements - predict from -max_hkl to +max_hkl (incl. +max_hkl); small fixed in notation	2026-01-03 15:02:26 +01:00
Filip Leonarski	d818c65ef2	BraggPredictionRotation: Guard for negative rotation direction	2026-01-03 14:50:10 +01:00
Filip Leonarski	df805b8e6e	BraggIntegrate2D: Fix missing return statement All checks were successful Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m38s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 12m37s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 12m49s Details Build Packages / Generate python client (push) Successful in 31s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 13m38s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 51s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m59s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m5s Details Build Packages / build:rpm (rocky8) (push) Successful in 14m7s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m37s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m34s Details Build Packages / Unit tests (push) Successful in 54m56s Details	2025-12-21 14:10:27 +01:00
Filip Leonarski	c7f539c11e	ScaleAndMerge: Add (very much work in progress) Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 12m22s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 14m0s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m56s Details Build Packages / Generate python client (push) Successful in 12s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 14m3s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8) (push) Successful in 14m17s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m22s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m34s Details Build Packages / Build documentation (push) Successful in 34s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m46s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m13s Details Build Packages / Unit tests (push) Failing after 45m21s Details	2025-12-18 13:18:51 +01:00
Filip Leonarski	c4c688091e	BraggIntegrate: Add Lorentz factor (1/sin(2*theta)) for rotation measurment	2025-12-18 13:13:39 +01:00
Filip Leonarski	068416c470	AnalyzeIndexing: Move mosaicity to a dedicated function + for rotation indexing always consider as indexed Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 12m10s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m5s Details Build Packages / Generate python client (push) Successful in 30s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m59s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m57s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 34s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m19s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 14m20s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m32s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m47s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m13s Details Build Packages / Unit tests (push) Has been cancelled Details	2025-12-18 12:41:11 +01:00
Filip Leonarski	1e48de453d	BraggPrediction: Work in progress	2025-12-18 12:32:03 +01:00
Filip Leonarski	55a6758470	BraggPredictionRotation: Work in progress Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Failing after 9m34s Details Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 10m39s Details Build Packages / Generate python client (push) Successful in 28s Details Build Packages / build:rpm (rocky8_nocuda) (push) Failing after 11m15s Details Build Packages / build:rpm (rocky9) (push) Failing after 11m9s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 44s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Failing after 11m58s Details Build Packages / build:rpm (ubuntu2204) (push) Failing after 12m4s Details Build Packages / build:rpm (rocky8) (push) Failing after 13m3s Details Build Packages / build:rpm (rocky8_sls9) (push) Failing after 13m13s Details Build Packages / Unit tests (push) Failing after 3m46s Details Build Packages / build:rpm (ubuntu2404) (push) Failing after 6m52s Details	2025-12-18 11:57:58 +01:00
Filip Leonarski	8437f96644	BraggPrediction: Work in progress	2025-12-18 11:41:00 +01:00
Filip Leonarski	c9b2584d9f	Reflection: Add partiality for prediction (set to one at the moment)	2025-12-18 11:23:46 +01:00
Filip Leonarski	bdfde99074	BraggIntegrate2D: Take const vector of predictions and return new vector	2025-12-18 11:23:02 +01:00
Filip Leonarski	229ab63e17	IndexAndRefine: Fix wrong vector being used for predicted reflections	2025-12-18 10:18:31 +01:00
Filip Leonarski	fc3d112596	Indexing: Fixes to better handling ice ring spots Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 13m3s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 14m8s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 14m19s Details Build Packages / Generate python client (push) Successful in 15s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m38s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (rocky8) (push) Successful in 14m43s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m46s Details Build Packages / Build documentation (push) Successful in 37s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 14m46s Details Build Packages / build:rpm (rocky9) (push) Successful in 15m13s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m22s Details Build Packages / Unit tests (push) Failing after 50m39s Details	2025-12-17 21:11:01 +01:00
Filip Leonarski	fe6e3cb15a	Indexing: fix indexing tolerance square data type	2025-12-17 21:03:17 +01:00
Filip Leonarski	159c32138d	Indexing: use squared norm to avoid sqrt() in checking indexing solution quality Some checks failed Build Packages / build:rpm (rocky8_nocuda) (push) Failing after 5m36s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Failing after 5m32s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Failing after 5m35s Details Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 5m42s Details Build Packages / Generate python client (push) Successful in 16s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 38s Details Build Packages / build:rpm (rocky8) (push) Failing after 8m39s Details Build Packages / build:rpm (rocky8_sls9) (push) Failing after 8m56s Details Build Packages / build:rpm (rocky9) (push) Failing after 9m1s Details Build Packages / build:rpm (ubuntu2204) (push) Failing after 9m5s Details Build Packages / Unit tests (push) Failing after 3m41s Details Build Packages / build:rpm (ubuntu2404) (push) Failing after 5m56s Details	2025-12-17 20:26:03 +01:00
Filip Leonarski	63d5a2dc4b	AnalyzeIndexing: Handle ice rings in counting percentage of indexed spots	2025-12-17 20:24:58 +01:00
Filip Leonarski	699e78e172	BraggIntegrate2D: fix missing break in switch statement Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m57s Details Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m5s Details Build Packages / Generate python client (push) Successful in 11s Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m31s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m46s Details Build Packages / Create release (push) Has been skipped Details Build Packages / Build documentation (push) Successful in 33s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m48s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 13m55s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m12s Details Build Packages / build:rpm (rocky9) (push) Successful in 15m14s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 7m24s Details Build Packages / Unit tests (push) Has been cancelled Details	2025-12-17 19:54:22 +01:00
Filip Leonarski	36c3fc2bf6	BraggPrediction: Fix to path Some checks failed Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m26s Details Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 13m28s Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 13m36s Details Build Packages / Generate python client (push) Successful in 15s Details Build Packages / build:rpm (rocky8) (push) Successful in 13m57s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (ubuntu2204) (push) Successful in 13m58s Details Build Packages / build:rpm (rocky8_sls9) (push) Successful in 14m7s Details Build Packages / Build documentation (push) Successful in 36s Details Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 14m39s Details Build Packages / build:rpm (rocky9) (push) Successful in 14m45s Details Build Packages / build:rpm (ubuntu2404) (push) Successful in 6m59s Details Build Packages / Unit tests (push) Failing after 52m1s Details	2025-12-17 18:21:15 +01:00
Filip Leonarski	5a0d654298	Cmake: Add missing subdirectory	2025-12-17 18:06:19 +01:00
Filip Leonarski	78c205bf69	IndexAndRefine: Integration operates in place (prelude to general 3D routine) + fix a bit sorting Some checks failed Build Packages / build:rpm (ubuntu2404_nocuda) (push) Failing after 9m36s Details Build Packages / build:rpm (rocky8_nocuda) (push) Failing after 11m7s Details Build Packages / build:rpm (rocky9_nocuda) (push) Failing after 11m13s Details Build Packages / Generate python client (push) Successful in 27s Details Build Packages / build:rpm (rocky8) (push) Failing after 11m47s Details Build Packages / Create release (push) Has been skipped Details Build Packages / build:rpm (ubuntu2204_nocuda) (push) Failing after 11m58s Details Build Packages / Build documentation (push) Successful in 49s Details Build Packages / build:rpm (ubuntu2204) (push) Failing after 12m26s Details Build Packages / build:rpm (rocky9) (push) Failing after 12m46s Details Build Packages / build:rpm (rocky8_sls9) (push) Failing after 12m51s Details Build Packages / Unit tests (push) Failing after 4m29s Details Build Packages / build:rpm (ubuntu2404) (push) Failing after 7m10s Details	2025-12-17 16:50:40 +01:00
Filip Leonarski	5456be7527	BraggPrediction: Split into a separate directory	2025-12-17 16:35:00 +01:00

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1121 Commits