e1b22c792a3d79da58ce0caa7c2db3f7fcb83e2c
1108 Commits
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 leonarski_f
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e1b22c792a | JFJochStateMachine: Fix state transition in Pedestal() | ||
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leonarski_f
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2373902eb4 | MXAnalysisAfterFPGA: Also calculate time for CPU workflow | ||
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leonarski_f
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0e9cb1bb7a | jfjoch_writer: Put NaN into indexed lattice as placeholder | ||
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leonarski_f
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ae4c5a7758 | IndexAndRefine: Indexing time is now recorded in the main loop | ||
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leonarski_f
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5f38e35aca | MXAnalysisAfterFPGA: Include spot finding analysis time in the total number | ||
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leonarski_f
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d84cb9079a | IndexAndRefine: Don't allow zero size/very small volume | ||
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leonarski_f
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a6326b0377 |
JFJochStateMachine: Fix missing pedestal thread
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leonarski_f
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994c0f96fa |
JFJochReceiverFPGA: compression and total processing time are lost due to order of operations
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leonarski_f
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162eab63b7 |
JFJochStateMachine: Notify everyone on CalibrateDetector finished + small modifications to handling state
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leonarski_f
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a7e98e91ab | JFJochStateMachine: Notify everyone on CalibrateDetector finished | ||
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leonarski_f
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38358e51b0 |
Frontend: Fix units
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leonarski_f
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3a6abe3f2a | CHANGELOG | ||
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leonarski_f
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f493d77a2a |
JFJochReceiver: Make it a bit more verbose
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leonarski_f
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c2d15e22ab |
Define time using std::chrono::nanosecond whenever possible, than if needed for I/O convert to micro/milli-seconds
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leonarski_f
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beb4f316e5 | Use constexpr based definitions instead of macros | ||
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leonarski_f
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e3447b13e6 | DetectorSettings: Remove unnecessary overload for FrameTime | ||
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leonarski_f
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9fe5fc7e4c |
Detector read-out time can be in nanoseconds (this is work in progress, need to adapt count time and frame time to serious units)
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leonarski_f
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f9433eee38 | DiffractionExperiment: Use std::chrono::duration to convert to float | ||
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leonarski_f
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b89298a466 |
CHANGELOG
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leonarski_f
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2b84394d2a | DectrisSimplonClient: Don't configure beam center and detector distance via SIMPLON API, as these just take too much time, while Jungfraujoch anyway doesn't use these values | ||
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leonarski_f
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cd4a4fb6b5 | VERSION: 1.0.0-rc.139 | ||
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leonarski_f
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3ba3cc6e99 | ZMQImagePuller: Add logging of connect | ||
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leonarski_f
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36b45f2ab4 |
JFJochReceiver: Move preparing image buffer to later for Lite-workflow
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leonarski_f
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e5ee55e963 | DectrisSimplonClient: Reduce number of calls to Simplon API at start | ||
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leonarski_f
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230480e390 |
v1.0.0-rc.138 (#48)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.
jfjoch_broker: Cleanup DECTRIS start-up code to enable a shorter start time
jfjoch_broker: Allow for asynchronous start to allow overlapping detector configuration with other beamline preparations
jfjoch_broker: Goniometer axis name is converted to lowercase
jfjoch_broker: Fix bug, where wrong HTTP error codes were returned
jfjoch_broker: Improve sigma estimation during merging (K. Takaba)
---------
Co-authored-by: takaba_k <kiyofumi.takaba@psi.ch>
Reviewed-on: #48
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.138
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leonarski_f
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c981e1b91c |
v1.0.0-rc.137 (#46)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Better track time for each operation in the processing stack * jfjoch_broker: Rewrite preprocessing of diffraction images in the non-FPGA workflow to better use GPUs (work in progress) * jfjoch_broker: Remove ROI calculation in the non-FPGA workflow (work in progress) * jfjoch_viewer: Toolbar displays image number starting from 1 (instead of 0) Reviewed-on: #461.0.0-rc.137 |
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leonarski_f
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c1c170112c |
v1.0.0-rc.136 (#45)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Improve logic regarding indexing architecture and thread pools (work in progress). Reviewed-on: #451.0.0-rc.136 |
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leonarski_f
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bb9f5c715f |
v1.0.0-rc.135 (#44)
Build Packages / build:rpm (ubuntu2204_nocuda) (push) Successful in 9m55s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * Multiple small bug fixes scattered across the whole code base. (detected with GPT-5.4) * jfjoch_viewer: Improve image render performance Reviewed-on: #44 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.135 |
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leonarski_f
|
4a852b4d6b |
v1.0.0-rc.134 (#43)
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 12m57s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Add better locking for detector object - should help, when detector initialization takes too long * jfjoch_writer: Enable writing single, integrated HDF5 file with both data and metadata * XDS plugin: Add generation of Jungfraujoch plugin for XDS * CI: Add tests with XDS and DIALS (`xia2.ssx`) Reviewed-on: #431.0.0-rc.134 |
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leonarski_f
|
81bd9a06a1 |
CI pipeline upgrade (#42)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m16s
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Updates to CI pipeline * New docker image for Ubuntu 22.04 with CMake 3.26 * New docker image for Rocky 9 with DIALS 3.27 * New automated test to check for DIALS processing with xia2.ssx Reviewed-on: #42 |
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leonarski_f
|
6133da1377 |
v1.0.0-rc.133
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m5s
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Build Packages / Build documentation (push) Failing after 9s
This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Use httplib for HTTP server instead of Pistache * jfjoch_broker: Drop OpenSSL support * jfjoch_broker: Base work for multi-lattice support in the future * Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib) Reviewed-on: #411.0.0-rc.133 |
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leonarski_f
|
2ab9deb20b |
v1.0.0-rc.123 (#40)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 13m14s
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Documentation update Reviewed-on: #401.0.0-rc.132 |
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leonarski_f
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166fcdb68f |
v1.0.0-rc.131 (#39)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m20s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug in saving JUNGFRAU calibration (pedestal/pedestalRMS) * jfjoch_viewer: Fix calibration (pedestal) images being open flipped * jfjoch_process: Add space group detection (EXPERIMENTAL) Reviewed-on: #391.0.0-rc.131 |
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leonarski_f
|
928789a67c |
v1.0.0-rc.130 (#37)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m14s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Rotation indexer has two retries if failes * jfjoch_broker: Rotation indexer handles small number of rotation images (like test shot) * jfjoch_broker: Integration calculates background mask based on R2 radius * jfjoch_process: HDF5 files are not saved by default Reviewed-on: #371.0.0-rc.130 |
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leonarski_f
|
64002f1e29 |
v1.0.0-rc.129 (#36)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m14s
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Build Packages / Unit tests (push) Failing after 1h18m57s
This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Significant improvements in TCP image socket, as a viable alternative for ZeroMQ sockets (only a single port on broker side, dynamically change number of writers, acknowledgments for written files) * jfjoch_broker: Delta phi is calculated also for still data in Bragg prediction * jfjoch_broker: Image pusher statistics are accessible via the REST interface * jfjoch_writer: Supports TCP image socket and for these auto-forking option Reviewed-on: #36 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.129 |
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leonarski_f
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3036b1d37f |
v1.0.0-rc.128 (#35)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 11m39s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Handle properly reuse of image buffer locations * jfjoch_broker: Fix bug in counting idle slots * jfjoch_broker: Force obtuse angle for monoclinic cells * jfjoch_process: Change scaling refinement tolerance Reviewed-on: #35 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.128 |
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leonarski_f
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f3e0a15d26 |
v1.0.0-rc.127 (#34)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m51s
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Default EIGER readout time is 20 microseconds * jfjoch_broker: Multiple improvements regarding performance * jfjoch_broker: Image buffer allows to track frames in preparation and sending * jfjoch_broker: Dedicated thread for ZeroMQ transmission to better utilize the image buffer * jfjoch_broker: Experimental implementation of transmission with raw TCP/IP sockets * jfjoch_writer: Fixes regarding properly closing files in long data collections * jfjoch_process: Scale & merge has been significantly improved, but it is not yet integrated into mainstream code Reviewed-on: #341.0.0-rc.127 |
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leonarski_f
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32b681e591 |
v1.0.0-rc.126 (#33)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 10m14s
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This is an UNSTABLE release. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug for monoclinic space groups being wrongly refined when beta is much different from 90 deg. Reviewed-on: #33 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.126 |
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leonarski_f
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1ab257af6c |
v1.0.0-rc.125 (#32)
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 12m8s
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This is an UNSTABLE release. This version adds scalign and merging. These are experimental at the moment, and should not be used for production analysis. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Improve logic on switching on/off spot finding * jfjoch_broker: Increase maximum spot count for FFBIDX to 65536 * jfjoch_broker: Increase default maximum unit cell for FFT to 500 A (could have performance impact, TBD) * jfjoch_process: Add scalign and merging functionality - program is experimental at the moment and should not be used for production analysis * jfjoch_viewer: Display partiality and reciprocal Lorentz-polarization correction for each reflection * jfjoch_writer: Save more information about each reflection Reviewed-on: #32 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.125 |
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leonarski_f
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07fe4dd3bb |
v1.0.0-rc.124 (#31)
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 11m23s
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them, especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123. * jfjoch_broker: Improve refection position prediction and Bragg integration code. * jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation. * jfjoch_writer: Fix saving mosaicity properly in HDF5 file. * jfjoch_viewer: Introduce high-dynamic range mode for images * jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%) * jfjoch_viewer: Zoom-in numbers have better readability Reviewed-on: #31 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.124 |
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leonarski_f
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1c4dfd03e2 |
v1.0.0-rc.123 (#30)
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m22s
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This is an UNSTABLE release. * jfjoch_broker: Use newer version of Google Ceres for (potential) CUDA 13 compatibility * jfjoch_broker: Improve performance of generating preview images, especially for large detectors (9M-16M) * jfjoch_viewer: Improve performance of displaying images, especially for large detectors (9M-16M) * jfjoch_viewer: Add more color schemes for better image readability * HDF5: Common mutex for reading and writing HDF5 if both operations were to happen in the same executable * HDF5: suppress warning if path (upstream group) doesn't exists when checking if leaf exists Reviewed-on: #30 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.123 |
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leonarski_f
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27496b8207 |
v1.0.0-rc.122 (#29)
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 7m57s
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This is an UNSTABLE release. * jfjoch_broker: Add thresholding to prefer shorter vectors after FFT * jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress) * jfjoch_viewer: Display file opening errors * jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available Reviewed-on: #29 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.122 |
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e2b240356c |
v1.0.0-rc.121 (#28)
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This is an UNSTABLE release. * jfjoch_broker: Report changes in the image buffer, so viewer doesn't reload constantly * jfjoch_viewer: Improve performance of loading images * jfjoch_viewer: Auto-throttle image loading in HTTP-sync / movie modes * jfjoch_viewer: Auto-foreground calculated with histogram * jfjoch_viewer: Fix rare segmentation fault Reviewed-on: #28 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.121 |
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a0a659a02c |
v1.0.0-rc.120 (#27)
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This is an UNSTABLE release. * jfjoch_broker: Improve performance of binary plot export Reviewed-on: #27 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.120 |
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36d0507758 |
v1.0.0-rc.119 (#26)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Add binary export of data analysis plots over OpenAPI * jfjoch_broker: Minor fixes to HTTP error handling * jfjoch_viewer: Prefer binary plots over JSON plots * jfjoch_viewer: Change foreground with F button + wheel * jfjoch_viewer: Change way how angles are displayed * jfjoch_viewer: Display resolution of the mouse cursor in top left corner Reviewed-on: #26 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.119 |
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b02c412d59 |
v1.0.0-rc.118 (#25)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Fix issue when HTTP sync silently disconnected when it was enabled when the broker was starting measurement. * jfjoch_broker: Add protections on time of geometry optimization and reduce rotation recalculations Reviewed-on: #25 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.118 |
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d1a4c19ef3 |
v1.0.0-rc.117 (#24)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add ROI results to the dataset info plots * jfjoch_writer: Remove HTTP interface, as it is not needed/used at the moment Reviewed-on: #24 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.117 |
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59911788d7 |
v1.0.0-rc.116 (#23)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add binning options in the context menu Reviewed-on: #23 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.116 |
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c8bbf8a186 |
v1.0.0-rc.115 (#22)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Default spot finding settings can be configured via config JSON * jfjoch_viewer: FFT analysis of data in the dataset plot Reviewed-on: #22 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.115 |
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68d121ab3a |
v 1.0.0-rc.114b (#21)
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Version not properly set Reviewed-on: #21 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.114 |