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Author	SHA1	Message	Date
leonarski_f	dcec74bfb3	IndexerThreadPool: Remove check for spot count prior to scheduling to run the task. This will introduce bias in the result - as images without spots will increase number of non-indexed images.	2026-04-19 20:27:07 +02:00
leonarski_f	c90e344532	jfjoch_test: TCP/IP links use an auto-assigned port	2026-04-18 18:49:34 +02:00
leonarski_f	e1021bf90d	CI: Remove extra verbose	2026-04-18 17:45:43 +02:00
leonarski_f	4c8bcf59c5	CI: Extra verbose - try again	2026-04-18 16:35:19 +02:00
leonarski_f	320d0ef045	CI: Extra verbose	2026-04-18 12:34:46 +02:00
leonarski_f	20901579af	IndexerThreadPool: Tightening of thread safety	2026-04-17 21:11:39 +02:00
leonarski_f	2f6be24180	CHANGELOG: Update	2026-04-17 13:35:56 +02:00
leonarski_f	c4a047c3aa	Frontend: Update redocly	2026-04-17 13:34:32 +02:00
leonarski_f	f9a43f9915	VERSION: 1.0.0-rc.136	2026-04-17 13:34:20 +02:00
leonarski_f	e67db3c4ff	OpenAPI: Default blocking value in indexing_settings is true	2026-04-17 13:33:12 +02:00
leonarski_f	588c8d3ed1	jfjoch_fpga_test: Add processing time per image metrics	2026-04-17 13:31:49 +02:00
leonarski_f	23af9ecefa	Remove jfjoch_indexing_test, as it is not used anymore	2026-04-17 13:31:26 +02:00
leonarski_f	7cf5ff01d8	AnalyzeIndexing: Remove unused mosaicity calculation function	2026-04-17 13:19:43 +02:00
leonarski_f	397f959135	IndexAndRefine: Add stronger entry conditions for running functions	2026-04-17 13:08:13 +02:00
leonarski_f	b35ebbd7be	jfjoch_lite_perf_test: Report mean processing time per image	2026-04-17 13:02:39 +02:00
leonarski_f	6e840b4422	IndexAndRefine: Split rotation and non-rotation indexing part	2026-04-17 10:47:31 +02:00
leonarski_f	725bdb05be	OpenAPI: blocking is required argument for indexing_settings	2026-04-17 09:55:58 +02:00
leonarski_f	005e7505c2	Frontend: Update dependencies	2026-04-17 09:55:36 +02:00
leonarski_f	542bbd9fc8	Frontend: Fix dependencies	2026-04-16 22:56:59 +02:00
leonarski_f	e4fbaa4440	OpenAPI: Add blocking indexing thread pool option	2026-04-16 22:56:15 +02:00
leonarski_f	1b06ecfad6	IndexerThreadPool: Minor fixes	2026-04-16 22:45:44 +02:00
leonarski_f	801a50830a	IndexerThreadPool: New version - requests are dropped, if no available workers (good for real-time, not good for offline processing...need smarter fix)	2026-04-16 22:35:32 +02:00
leonarski_f	6aa671c78c	IndexerThreadPool: Handle Auto indexer type	2026-04-16 19:53:12 +02:00
leonarski_f	31a1b90bb9	Indexer: Fix viable cell min spots meaning to be more correct	2026-04-16 19:40:58 +02:00
leonarski_f	5a830d7af6	IndexerThreadPool: IndexerThreadPool return value, not promise + if no spots or no indexing algorithm, don't queue	2026-04-16 19:40:27 +02:00
leonarski_f	7899765e5f	CBOR: Fix receiver_buf_in_sending encoding	2026-04-16 14:19:42 +02:00
leonarski_f	bb9f5c715f	v1.0.0-rc.135 (#44) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * Multiple small bug fixes scattered across the whole code base. (detected with GPT-5.4) * jfjoch_viewer: Improve image render performance Reviewed-on: #44 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.135	2026-04-16 11:59:59 +02:00
leonarski_f	4a852b4d6b	v1.0.0-rc.134 (#43) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Add better locking for detector object - should help, when detector initialization takes too long * jfjoch_writer: Enable writing single, integrated HDF5 file with both data and metadata * XDS plugin: Add generation of Jungfraujoch plugin for XDS * CI: Add tests with XDS and DIALS (`xia2.ssx`) Reviewed-on: #43 1.0.0-rc.134	2026-04-09 13:30:47 +02:00
leonarski_f	81bd9a06a1	CI pipeline upgrade (#42) ... Updates to CI pipeline * New docker image for Ubuntu 22.04 with CMake 3.26 * New docker image for Rocky 9 with DIALS 3.27 * New automated test to check for DIALS processing with xia2.ssx Reviewed-on: #42	2026-03-28 20:06:23 +01:00
leonarski_f	6133da1377	v1.0.0-rc.133 ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Use httplib for HTTP server instead of Pistache * jfjoch_broker: Drop OpenSSL support * jfjoch_broker: Base work for multi-lattice support in the future * Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib) Reviewed-on: #41 1.0.0-rc.133	2026-03-26 20:50:33 +01:00
leonarski_f	2ab9deb20b	v1.0.0-rc.123 (#40) ... Documentation update Reviewed-on: #40 1.0.0-rc.132	2026-03-12 12:17:11 +01:00
leonarski_f	166fcdb68f	v1.0.0-rc.131 (#39) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug in saving JUNGFRAU calibration (pedestal/pedestalRMS) * jfjoch_viewer: Fix calibration (pedestal) images being open flipped * jfjoch_process: Add space group detection (EXPERIMENTAL) Reviewed-on: #39 1.0.0-rc.131	2026-03-07 11:34:04 +01:00
leonarski_f	928789a67c	v1.0.0-rc.130 (#37) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Rotation indexer has two retries if failes * jfjoch_broker: Rotation indexer handles small number of rotation images (like test shot) * jfjoch_broker: Integration calculates background mask based on R2 radius * jfjoch_process: HDF5 files are not saved by default Reviewed-on: #37 1.0.0-rc.130	2026-03-06 14:38:56 +01:00
leonarski_f	64002f1e29	v1.0.0-rc.129 (#36) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Significant improvements in TCP image socket, as a viable alternative for ZeroMQ sockets (only a single port on broker side, dynamically change number of writers, acknowledgments for written files) * jfjoch_broker: Delta phi is calculated also for still data in Bragg prediction * jfjoch_broker: Image pusher statistics are accessible via the REST interface * jfjoch_writer: Supports TCP image socket and for these auto-forking option Reviewed-on: #36 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.129	2026-03-05 22:13:12 +01:00
leonarski_f	3036b1d37f	v1.0.0-rc.128 (#35) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Handle properly reuse of image buffer locations * jfjoch_broker: Fix bug in counting idle slots * jfjoch_broker: Force obtuse angle for monoclinic cells * jfjoch_process: Change scaling refinement tolerance Reviewed-on: #35 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.128	2026-03-03 22:24:44 +01:00
leonarski_f	f3e0a15d26	v1.0.0-rc.127 (#34) ... This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Default EIGER readout time is 20 microseconds * jfjoch_broker: Multiple improvements regarding performance * jfjoch_broker: Image buffer allows to track frames in preparation and sending * jfjoch_broker: Dedicated thread for ZeroMQ transmission to better utilize the image buffer * jfjoch_broker: Experimental implementation of transmission with raw TCP/IP sockets * jfjoch_writer: Fixes regarding properly closing files in long data collections * jfjoch_process: Scale & merge has been significantly improved, but it is not yet integrated into mainstream code Reviewed-on: #34 1.0.0-rc.127	2026-03-02 15:57:12 +01:00
leonarski_f	32b681e591	v1.0.0-rc.126 (#33) ... This is an UNSTABLE release. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug for monoclinic space groups being wrongly refined when beta is much different from 90 deg. Reviewed-on: #33 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.126	2026-02-19 07:01:38 +01:00
leonarski_f	1ab257af6c	v1.0.0-rc.125 (#32) ... This is an UNSTABLE release. This version adds scalign and merging. These are experimental at the moment, and should not be used for production analysis. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Improve logic on switching on/off spot finding * jfjoch_broker: Increase maximum spot count for FFBIDX to 65536 * jfjoch_broker: Increase default maximum unit cell for FFT to 500 A (could have performance impact, TBD) * jfjoch_process: Add scalign and merging functionality - program is experimental at the moment and should not be used for production analysis * jfjoch_viewer: Display partiality and reciprocal Lorentz-polarization correction for each reflection * jfjoch_writer: Save more information about each reflection Reviewed-on: #32 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.125	2026-02-18 16:17:21 +01:00
leonarski_f	07fe4dd3bb	v1.0.0-rc.124 (#31) ... This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them, especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123. * jfjoch_broker: Improve refection position prediction and Bragg integration code. * jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation. * jfjoch_writer: Fix saving mosaicity properly in HDF5 file. * jfjoch_viewer: Introduce high-dynamic range mode for images * jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%) * jfjoch_viewer: Zoom-in numbers have better readability Reviewed-on: #31 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.124	2026-02-01 13:29:33 +01:00
leonarski_f	1c4dfd03e2	v1.0.0-rc.123 (#30) ... This is an UNSTABLE release. * jfjoch_broker: Use newer version of Google Ceres for (potential) CUDA 13 compatibility * jfjoch_broker: Improve performance of generating preview images, especially for large detectors (9M-16M) * jfjoch_viewer: Improve performance of displaying images, especially for large detectors (9M-16M) * jfjoch_viewer: Add more color schemes for better image readability * HDF5: Common mutex for reading and writing HDF5 if both operations were to happen in the same executable * HDF5: suppress warning if path (upstream group) doesn't exists when checking if leaf exists Reviewed-on: #30 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.123	2026-01-30 13:43:09 +01:00
leonarski_f	27496b8207	v1.0.0-rc.122 (#29) ... This is an UNSTABLE release. * jfjoch_broker: Add thresholding to prefer shorter vectors after FFT * jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress) * jfjoch_viewer: Display file opening errors * jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available Reviewed-on: #29 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.122	2025-12-16 15:27:40 +01:00
leonarski_f	e2b240356c	v1.0.0-rc.121 (#28) ... This is an UNSTABLE release. * jfjoch_broker: Report changes in the image buffer, so viewer doesn't reload constantly * jfjoch_viewer: Improve performance of loading images * jfjoch_viewer: Auto-throttle image loading in HTTP-sync / movie modes * jfjoch_viewer: Auto-foreground calculated with histogram * jfjoch_viewer: Fix rare segmentation fault Reviewed-on: #28 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.121	2025-12-12 21:24:20 +01:00
leonarski_f	a0a659a02c	v1.0.0-rc.120 (#27) ... This is an UNSTABLE release. * jfjoch_broker: Improve performance of binary plot export Reviewed-on: #27 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.120	2025-12-09 15:21:40 +01:00
leonarski_f	36d0507758	v1.0.0-rc.119 (#26) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Add binary export of data analysis plots over OpenAPI * jfjoch_broker: Minor fixes to HTTP error handling * jfjoch_viewer: Prefer binary plots over JSON plots * jfjoch_viewer: Change foreground with F button + wheel * jfjoch_viewer: Change way how angles are displayed * jfjoch_viewer: Display resolution of the mouse cursor in top left corner Reviewed-on: #26 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.119	2025-12-08 19:53:35 +01:00
leonarski_f	b02c412d59	v1.0.0-rc.118 (#25) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Fix issue when HTTP sync silently disconnected when it was enabled when the broker was starting measurement. * jfjoch_broker: Add protections on time of geometry optimization and reduce rotation recalculations Reviewed-on: #25 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.118	2025-12-06 20:05:30 +01:00
leonarski_f	d1a4c19ef3	v1.0.0-rc.117 (#24) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add ROI results to the dataset info plots * jfjoch_writer: Remove HTTP interface, as it is not needed/used at the moment Reviewed-on: #24 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.117	2025-12-05 22:03:07 +01:00
leonarski_f	59911788d7	v1.0.0-rc.116 (#23) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add binning options in the context menu Reviewed-on: #23 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.116	2025-12-04 16:20:27 +01:00
leonarski_f	c8bbf8a186	v1.0.0-rc.115 (#22) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Default spot finding settings can be configured via config JSON * jfjoch_viewer: FFT analysis of data in the dataset plot Reviewed-on: #22 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.115	2025-12-04 11:56:14 +01:00
leonarski_f	68d121ab3a	v 1.0.0-rc.114b (#21) ... Version not properly set Reviewed-on: #21 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> 1.0.0-rc.114	2025-12-02 13:10:03 +01:00
leonarski_f	6d08310622	v1.0.0-rc.114 (#20) ... This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Fix generating JPEG images with resolution estimation Reviewed-on: #20 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2025-12-02 11:32:08 +01:00