leonarski_f and Claude Opus 4.8
100fe7b7e7
PixelRefine: make factored Terms 1+2 the model, remove old wiring
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PixelRefine is now an intensity-only operation: geometry is fixed (refined
upstream by XtalOptimizer) and the only objective is the factored per-reflection
likelihood (FACTORED_MODEL.md Terms 1+2) - measured per-resolution profile width
R1 plus one Fisher-weighted intensity/scaling residual per reflection, fitting
the per-image scale G and B. Validated on crystal 2 (fixed_master.h5 as stills,
1.7 A): CC1/2 84-92%, CCref 77-92%, flat - reproduces the env-flag prototype and
matches the rotation path from the stills path.
Removed:
- the per-pixel ShoeboxResidual loss and PixelResidual cost functor;
- all in-PixelRefine geometry refinement (orientation/cell/beam/distance/R),
the regularised-orientation LSQ, signal-weighting, and the global sweep;
- Term 3 (per-spot recentring) - a confirmed no-op on both crystals;
- the diagnostic scaffolding (covariance, centroid, adaptive_R1) and the
PR_* env knobs + stderr dumps in IndexAndRefine;
- the PredictImage/ChiSquaredImage renderers and the entire viewer
PixelRefine window/table/params + worker bindings + shoebox overlay.
The sweep box-integrator background median became mean (consistency) by virtue
of removing the sweep. METHODS.md rewritten for the current model; findings
recorded in FINDINGS-2026-06.md. Net -2200 lines.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-13 22:02:18 +02:00
leonarski_f and Claude Opus 4.8
6f2033db00
PixelRefine: checkpoint before cleanup (factored model + all diagnostic levers)
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Snapshot of the messy state: factored likelihood Terms 1+2+3 behind PR_*
env flags (PR_INTENSITY/PR_SHAPE/PR_RECENTER) alongside the old per-pixel
ShoeboxResidual, plus diagnostic scaffolding (PR_R0/R1/COV/FIX_R0/FIX_R/
ADAPT_R1/CENTROID/RECENTER) and the FACTORED_MODEL.md spec. Next commit
makes Terms 1+2 the model and strips all of this.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-13 21:34:33 +02:00
leonarski_f
db68c8dc38
PixelRefine: Results seem to be much better
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2026-06-12 17:28:18 +02:00
leonarski_f
47dc19dd03
PixelRefine: Improvements to accept more reasonable count of reflections
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2026-06-12 10:12:23 +02:00
leonarski_f
d31063ca3f
PixelRefine: Some improvements
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2026-06-11 21:25:05 +02:00
leonarski_f
bd5fef7f61
PixelRefine: Simplify (remove Lorentz correction, remove background from azimuthal integration)
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2026-06-10 18:37:46 +02:00
leonarski_f
efe882f4b6
jfjoch_viewer: Better display (to be tested) of pixel refine
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2026-06-09 16:28:17 +02:00
leonarski_f
e4b66f9cd9
PIxelRefine: Another iteration
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2026-06-09 08:04:27 +02:00
leonarski_f
698a98be35
PixelRefine: Claude fixed my bugs
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2026-06-08 20:06:53 +02:00
leonarski_f
155c53acd8
jfjoch_process: First pixel refine integration
2026-06-08 15:37:27 +02:00
leonarski_f
6f31159607
PixelRefine: Add bandwidth contribution
2026-06-08 13:59:01 +02:00
leonarski_f
6f6098d508
PixelRefine: Work in progress (Claude)
2026-06-08 13:44:39 +02:00
leonarski_f
66a48c4266
PixelRefine: Work in progress (Claude)
2026-06-08 12:43:10 +02:00
leonarski_f
9a991b6614
PixelRefine: Work in progress
2026-06-08 11:59:48 +02:00
leonarski_f
50f953bcc5
PixelRefine: Work in progress
2026-06-08 09:41:58 +02:00
leonarski_fandClaude Opus 4.8