7da0847cc79d1924e00528964fcd899cc9d024d8
1109 Commits
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 leonarski_f
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7da0847cc7 | jfjoch_broker: Print per-frame mean analysis to the log | ||
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leonarski_f
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a5dfc7e2b6 |
CHANGELOG
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leonarski_f
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ea94f102fa |
ImagePreprocessorBuffer: Add <cstdef> to make Ubuntu 22.04 happy
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leonarski_f
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17619bd19a |
ImagePreprocessorBuffer: Dedicated class to handle buffer used by spot finding.
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leonarski_f
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e51a45a5ea |
MXAnalysisWithoutFPGA: Better synchronize preprocessing, azint and spot finding on GPU
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leonarski_f
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f208109717 | ImageProcessor: Work in progress on GPU code to preprocess images | ||
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leonarski_f
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4ee249fca2 | ImagePreprocessor: Fix license header | ||
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leonarski_f
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92a3c5eb30 | AzIntEngineGPU: Fixes | ||
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leonarski_f
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7265bd91f2 |
StrongPixelSet: Fix
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leonarski_f
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b73848860f |
ImagePreprocessor: Minor cleanup
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leonarski_f
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b7c5497c2c | AzIntEngine: Azimuthal integration runs on CPU/GPU | ||
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leonarski_f
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6f361afae3 | Separate class for Azimuthal Integration | ||
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leonarski_f
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b63d7eb6cb | MXAnalysisWithoutFPGA: Azimuthal integration moved to spot finder | ||
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leonarski_f
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9338a876fd | ImagePreprocessor: Separate azint from preprocessing (later put azint on GPU!) | ||
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leonarski_f
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d0446b453b | ImagePreprocessor: Simplify a lot the class | ||
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leonarski_f
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5695846756 | StrongPixelSet: Fixes to data types and max strong pixel count | ||
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leonarski_f
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cf420d5622 | ImagePreprocessor: Dedicated class to handle preprocessing of diffraction images in Receiver Lite workflow + remove ROI calculation in Lite workflow | ||
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leonarski_f
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1f65050618 | MXAnalysisWithoutFPGA: Clarify lack of thread-safety and remove unused mutex, decompression buffer is internal | ||
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leonarski_f
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97c6b6bea6 | Save compression/decompression time | ||
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leonarski_f
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0a0049dd2a | jfjoch_broker: Add compression time to the statistics | ||
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leonarski_f
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f5eec4a7f2 | VERSION: 1.0.0-rc.137 | ||
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leonarski_f
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8f35e7f4e3 | jfjoch_fpga_test: Print preprocessing time | ||
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leonarski_f
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b23a010026 | jfjoch_writer: Save preprocessing time | ||
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leonarski_f
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15be4ff6d7 | jfjoch_broker: Measure preprocessing time for images | ||
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leonarski_f
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3e30872c3c | jfjoch_process: Print frame rate | ||
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leonarski_f
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36e726a8d2 | jfjoch_viewer: Start image number from 1 in the toolbar and image list | ||
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leonarski_f
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c2de9c2b67 | JFJochHDF5Reader: Guard for peak count datasets being not present | ||
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leonarski_f
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c1c170112c |
v1.0.0-rc.136 (#45)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Improve logic regarding indexing architecture and thread pools (work in progress). Reviewed-on: #451.0.0-rc.136 |
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leonarski_f
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bb9f5c715f |
v1.0.0-rc.135 (#44)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * Multiple small bug fixes scattered across the whole code base. (detected with GPT-5.4) * jfjoch_viewer: Improve image render performance Reviewed-on: #44 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.135 |
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leonarski_f
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4a852b4d6b |
v1.0.0-rc.134 (#43)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Add better locking for detector object - should help, when detector initialization takes too long * jfjoch_writer: Enable writing single, integrated HDF5 file with both data and metadata * XDS plugin: Add generation of Jungfraujoch plugin for XDS * CI: Add tests with XDS and DIALS (`xia2.ssx`) Reviewed-on: #431.0.0-rc.134 |
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leonarski_f
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81bd9a06a1 |
CI pipeline upgrade (#42)
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Updates to CI pipeline * New docker image for Ubuntu 22.04 with CMake 3.26 * New docker image for Rocky 9 with DIALS 3.27 * New automated test to check for DIALS processing with xia2.ssx Reviewed-on: #42 |
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leonarski_f
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6133da1377 |
v1.0.0-rc.133
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132. * jfjoch_broker: Use httplib for HTTP server instead of Pistache * jfjoch_broker: Drop OpenSSL support * jfjoch_broker: Base work for multi-lattice support in the future * Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib) Reviewed-on: #411.0.0-rc.133 |
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leonarski_f
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2ab9deb20b |
v1.0.0-rc.123 (#40)
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Documentation update Reviewed-on: #401.0.0-rc.132 |
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leonarski_f
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166fcdb68f |
v1.0.0-rc.131 (#39)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug in saving JUNGFRAU calibration (pedestal/pedestalRMS) * jfjoch_viewer: Fix calibration (pedestal) images being open flipped * jfjoch_process: Add space group detection (EXPERIMENTAL) Reviewed-on: #391.0.0-rc.131 |
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leonarski_f
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928789a67c |
v1.0.0-rc.130 (#37)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Rotation indexer has two retries if failes * jfjoch_broker: Rotation indexer handles small number of rotation images (like test shot) * jfjoch_broker: Integration calculates background mask based on R2 radius * jfjoch_process: HDF5 files are not saved by default Reviewed-on: #371.0.0-rc.130 |
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leonarski_f
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64002f1e29 |
v1.0.0-rc.129 (#36)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Significant improvements in TCP image socket, as a viable alternative for ZeroMQ sockets (only a single port on broker side, dynamically change number of writers, acknowledgments for written files) * jfjoch_broker: Delta phi is calculated also for still data in Bragg prediction * jfjoch_broker: Image pusher statistics are accessible via the REST interface * jfjoch_writer: Supports TCP image socket and for these auto-forking option Reviewed-on: #36 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.129 |
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leonarski_f
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3036b1d37f |
v1.0.0-rc.128 (#35)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Handle properly reuse of image buffer locations * jfjoch_broker: Fix bug in counting idle slots * jfjoch_broker: Force obtuse angle for monoclinic cells * jfjoch_process: Change scaling refinement tolerance Reviewed-on: #35 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.128 |
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leonarski_f
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f3e0a15d26 |
v1.0.0-rc.127 (#34)
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This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Default EIGER readout time is 20 microseconds * jfjoch_broker: Multiple improvements regarding performance * jfjoch_broker: Image buffer allows to track frames in preparation and sending * jfjoch_broker: Dedicated thread for ZeroMQ transmission to better utilize the image buffer * jfjoch_broker: Experimental implementation of transmission with raw TCP/IP sockets * jfjoch_writer: Fixes regarding properly closing files in long data collections * jfjoch_process: Scale & merge has been significantly improved, but it is not yet integrated into mainstream code Reviewed-on: #341.0.0-rc.127 |
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leonarski_f
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32b681e591 |
v1.0.0-rc.126 (#33)
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This is an UNSTABLE release. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Fix bug for monoclinic space groups being wrongly refined when beta is much different from 90 deg. Reviewed-on: #33 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.126 |
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leonarski_f
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1ab257af6c |
v1.0.0-rc.125 (#32)
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This is an UNSTABLE release. This version adds scalign and merging. These are experimental at the moment, and should not be used for production analysis. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124. * jfjoch_broker: Improve logic on switching on/off spot finding * jfjoch_broker: Increase maximum spot count for FFBIDX to 65536 * jfjoch_broker: Increase default maximum unit cell for FFT to 500 A (could have performance impact, TBD) * jfjoch_process: Add scalign and merging functionality - program is experimental at the moment and should not be used for production analysis * jfjoch_viewer: Display partiality and reciprocal Lorentz-polarization correction for each reflection * jfjoch_writer: Save more information about each reflection Reviewed-on: #32 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.125 |
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leonarski_f
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07fe4dd3bb |
v1.0.0-rc.124 (#31)
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them, especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123. * jfjoch_broker: Improve refection position prediction and Bragg integration code. * jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation. * jfjoch_writer: Fix saving mosaicity properly in HDF5 file. * jfjoch_viewer: Introduce high-dynamic range mode for images * jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%) * jfjoch_viewer: Zoom-in numbers have better readability Reviewed-on: #31 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.124 |
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leonarski_f
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1c4dfd03e2 |
v1.0.0-rc.123 (#30)
Build Packages / build:rpm (ubuntu2404_nocuda) (push) Successful in 10m22s
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This is an UNSTABLE release. * jfjoch_broker: Use newer version of Google Ceres for (potential) CUDA 13 compatibility * jfjoch_broker: Improve performance of generating preview images, especially for large detectors (9M-16M) * jfjoch_viewer: Improve performance of displaying images, especially for large detectors (9M-16M) * jfjoch_viewer: Add more color schemes for better image readability * HDF5: Common mutex for reading and writing HDF5 if both operations were to happen in the same executable * HDF5: suppress warning if path (upstream group) doesn't exists when checking if leaf exists Reviewed-on: #30 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.123 |
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leonarski_f
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27496b8207 |
v1.0.0-rc.122 (#29)
Build Packages / build:rpm (rocky8_sls9) (push) Successful in 7m57s
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This is an UNSTABLE release. * jfjoch_broker: Add thresholding to prefer shorter vectors after FFT * jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress) * jfjoch_viewer: Display file opening errors * jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available Reviewed-on: #29 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.122 |
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leonarski_f
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e2b240356c |
v1.0.0-rc.121 (#28)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 9m28s
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This is an UNSTABLE release. * jfjoch_broker: Report changes in the image buffer, so viewer doesn't reload constantly * jfjoch_viewer: Improve performance of loading images * jfjoch_viewer: Auto-throttle image loading in HTTP-sync / movie modes * jfjoch_viewer: Auto-foreground calculated with histogram * jfjoch_viewer: Fix rare segmentation fault Reviewed-on: #28 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.121 |
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a0a659a02c |
v1.0.0-rc.120 (#27)
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This is an UNSTABLE release. * jfjoch_broker: Improve performance of binary plot export Reviewed-on: #27 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.120 |
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leonarski_f
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36d0507758 |
v1.0.0-rc.119 (#26)
Build Packages / build:rpm (rocky9_nocuda) (push) Successful in 10m11s
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Add binary export of data analysis plots over OpenAPI * jfjoch_broker: Minor fixes to HTTP error handling * jfjoch_viewer: Prefer binary plots over JSON plots * jfjoch_viewer: Change foreground with F button + wheel * jfjoch_viewer: Change way how angles are displayed * jfjoch_viewer: Display resolution of the mouse cursor in top left corner Reviewed-on: #26 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.119 |
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leonarski_f
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b02c412d59 |
v1.0.0-rc.118 (#25)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 8m22s
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Fix issue when HTTP sync silently disconnected when it was enabled when the broker was starting measurement. * jfjoch_broker: Add protections on time of geometry optimization and reduce rotation recalculations Reviewed-on: #25 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.118 |
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leonarski_f
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d1a4c19ef3 |
v1.0.0-rc.117 (#24)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add ROI results to the dataset info plots * jfjoch_writer: Remove HTTP interface, as it is not needed/used at the moment Reviewed-on: #24 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.117 |
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leonarski_f
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59911788d7 |
v1.0.0-rc.116 (#23)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 7m45s
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add binning options in the context menu Reviewed-on: #23 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.116 |
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leonarski_f
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c8bbf8a186 |
v1.0.0-rc.115 (#22)
Build Packages / build:rpm (rocky8_nocuda) (push) Successful in 8m17s
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Default spot finding settings can be configured via config JSON * jfjoch_viewer: FFT analysis of data in the dataset plot Reviewed-on: #22 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.115 |