5 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 4.8	ca7cbe206a	Add opt-in local-SNR spot gate and acceptance-fraction knob (serial stills) ... Two opt-in tools for weak serial-stills tuning; both default-off, so the default pipeline is bit-identical (verified: a serial-stills reference run reproduces HEAD's 7.85% indexing rate exactly). --local-snr <sigma> (AdaptiveSpotFinderCPU::FilterByLocalSNR): after the loose per-ring adaptive threshold builds connected-component spots, drop any spot that does not stand this many sigmas above its OWN LOCAL background (robust median/MAD of a square annulus), not just the azimuthal ring mean. On structured-background (XFEL) frames the ring mean underestimates the local diffuse level in some sectors, so the ring threshold floods; a real Bragg peak still stands many local sigmas proud. Validated on XFEL stills to separate real peaks from flood at the pixel level (real median local-SNR ~70 vs flood ~2.6; SNR>=5 keeps ~99.8% of real peaks, ~14% of flood). GPU-portable (a per-spot local reduction). NOTE: on the current serial-stills battery it is index-rate/CC1/2 neutral -- the flood that survives as CC clusters overlaps weak-real spots, and only lattice-fit separates those -- but it is the correct tool for genuinely floody data (ice/jet/loosened detector) and the right substrate for the online FPGA path. --min-indexed-fraction <f>: exposes the previously hardcoded 0.20 minimum indexed-spot fraction (AnalyzeIndexing) as a per-run setting. Lowering it admits weaker/sparser crystals; on flooded XFEL data the extra lattices are spurious (pair with --min-image-cc to gate them), on clean synchrotron data there are no marginal frames so it is a no-op -- useful as a gating-experiment primitive. Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>	2026-07-24 11:12:22 +02:00
leonarski_f	cc3eb8352c	v1.0.0-rc.148 (#58) ... This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144. * jfjoch_broker: Improve azimuthal integration (add <I^2> calculation) * jfjoch_broker: Fixes around indexing, aiming to handle multi-lattice crystals (work in progress, it is not fully integrated) * jfjoch_writer: Save mean(I), stddev(I), and count(I) for each azimuthal bin Reviewed-on: #58	2026-06-08 08:30:35 +02:00
leonarski_f	07fe4dd3bb	v1.0.0-rc.124 (#31) ... This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them, especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123. * jfjoch_broker: Improve refection position prediction and Bragg integration code. * jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation. * jfjoch_writer: Fix saving mosaicity properly in HDF5 file. * jfjoch_viewer: Introduce high-dynamic range mode for images * jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%) * jfjoch_viewer: Zoom-in numbers have better readability Reviewed-on: #31 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-02-01 13:29:33 +01:00
leonarski_f	27496b8207	v1.0.0-rc.122 (#29) ... This is an UNSTABLE release. * jfjoch_broker: Add thresholding to prefer shorter vectors after FFT * jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress) * jfjoch_viewer: Display file opening errors * jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available Reviewed-on: #29 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>	2025-12-16 15:27:40 +01:00
leonarski_f	c67337cfe1	v1.0.0-rc.72	2025-09-08 20:28:59 +02:00