7 Commits

Include renames

Author	SHA1	Message	Date
leonarski_fandClaude Opus 5	a7615c8778	compression: read plain LZ4 (HDF5 filter 32004), and name the filter when one is unsupported ... DECTRIS Eiger firmware 1.x compressed its images with the HDF Group's plain LZ4 filter rather than bitshuffle, and files from that era are still what a repository hands you. Read-only: nothing here produces it, and the new enumerator goes last so the existing values do not move, the enum being part of the CBOR stream. The framing is the same as bitshuffle's - a 64-bit big-endian total size, a 32-bit big-endian block size in bytes, then each block prefixed by its 32-bit big-endian compressed size - so only the unshuffle step differs. Verified on a real chunk: the declared total matched width*height*4 exactly and the block walk consumed the chunk to the byte. It cannot reuse the bitshuffle path, which requires the block to be a multiple of BSHUF_BLOCKED_MULT elements: these files put the whole image in ONE block, which is not. The unsupported-filter message now names the filter it found and the ones it knows. Before, an Eiger 1.x file did not report a codec problem at all - it reached spot finding with nothing decoded and failed as "0 spots from 60 images" then "found no lattice", which reads as a crystallography failure rather than a format one. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>	2026-08-28 21:56:12 +02:00
leonarski_f	d6389e12da	v1.0.0-rc.156 (#66) ... This is an UNSTABLE release. It includes many experimental features, as well as many AI generated fixes. We recommend using rc.152 for production use. * jfjoch_process: Major rotation (rot3d) data processing overhaul - robust profile-fit integration, Cauchy-loss scaling with optional absorption surface, de-novo indexing and space-group/centering determination fixes, and merging statistics + ISa in the mmCIF output. * jfjoch_process: Add EXPERIMENTAL ice-ring detection (--detect-ice-rings) that excludes ice reflections from scaling. * Compression: Add BSHUF_ZSTD_RLE_HUFF, make compression size-aware (drop frames that don't fit rather than aborting), and add the jfjoch_recompress tool. * jfjoch_viewer: Report "Multiple lattices detected" and grey out "Analyze dataset" on a live connection. * jfjoch_broker: Write smargon chi/phi goniometer positions to NXmx; read sensor thickness/material from HDF5 metadata. * CI: Build Windows (CUDA and non-CUDA) installers.Reviewed-on: #66 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>	2026-07-03 19:18:56 +02:00
leonarski_f	cc3eb8352c	v1.0.0-rc.148 (#58) ... This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144. * jfjoch_broker: Improve azimuthal integration (add <I^2> calculation) * jfjoch_broker: Fixes around indexing, aiming to handle multi-lattice crystals (work in progress, it is not fully integrated) * jfjoch_writer: Save mean(I), stddev(I), and count(I) for each azimuthal bin Reviewed-on: #58	2026-06-08 08:30:35 +02:00
leonarski_f	28d224afab	version 1.0.0-rc.25	2024-11-22 21:25:20 +01:00
leonarski_f	bef9f440ce	CompressionAlgorithm: Make BSHUF_LZ4 default	2023-11-16 19:59:33 +01:00
leonarski_f	16bbf54f2a	Remove open source license (for now)	2023-09-15 10:47:21 +02:00
leonarski_f	1757d42182	Initial commit ... Signed-off-by: Filip Leonarski <filip.leonarski@psi.ch>	2023-04-06 11:17:59 +02:00