imagej/ch.psi.imagej.hdf5
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Implemented option to hide image when opening

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This commit is contained in:
ebner 2018-01-24 10:35:52 +01:00
parent 70fa714aac
commit 75e490fa18
2 changed files with 27 additions and 8 deletions
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2
pom.xml
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@ -3,7 +3,7 @@
<modelVersion>4.0.0</modelVersion> <modelVersion>4.0.0</modelVersion>
<groupId>ch.psi</groupId> <groupId>ch.psi</groupId>
<artifactId>imagej.hdf5</artifactId> <artifactId>imagej.hdf5</artifactId>
<version>0.11.0</version> <version>0.12.0</version>
<dependencies> <dependencies>
<dependency> <dependency>

33
src/main/java/ch/psi/imagej/hdf5/HDF5Reader.java
View File

@ -46,7 +46,12 @@ public class HDF5Reader implements PlugIn {
* dataset=/your/path/to/dataset * dataset=/your/path/to/dataset
* *
*/ */
public ImageStack open(String arg, boolean interactive, String filename, String nameOfDataset, boolean virtualstack) { public ImageStack open(String arg, boolean interactive, String filename, String nameOfDataset, boolean virtualstack) {
return open(arg, interactive, filename, nameOfDataset, virtualstack, true);
}
public ImageStack open(String arg, boolean interactive, String filename, String nameOfDataset, boolean virtualstack, boolean showImage) {
// Map arguments = HDF5Reader.parseArguments(arg); // Map arguments = HDF5Reader.parseArguments(arg);
@ -118,7 +123,9 @@ public class HDF5Reader implements PlugIn {
ImagePlus imp = new ImagePlus(filename, stack); ImagePlus imp = new ImagePlus(filename, stack);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
stacks.add(stack); stacks.add(stack);
return stack; // TODO should return stacks instead of stack return stack; // TODO should return stacks instead of stack
@ -166,7 +173,9 @@ public class HDF5Reader implements PlugIn {
imp = new CompositeImage(imp, CompositeImage.COMPOSITE); imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
imp.setOpenAsHyperStack(true); imp.setOpenAsHyperStack(true);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else if (numberOfDimensions == 4 && dimensions[3] == 3) { } else if (numberOfDimensions == 4 && dimensions[3] == 3) {
logger.info("3D RGB Image"); logger.info("3D RGB Image");
@ -194,7 +203,9 @@ public class HDF5Reader implements PlugIn {
imp = new CompositeImage(imp, CompositeImage.COMPOSITE); imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
imp.setOpenAsHyperStack(true); imp.setOpenAsHyperStack(true);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else if (numberOfDimensions == 4) { } else if (numberOfDimensions == 4) {
logger.info("4D Image (HyperVolume)"); logger.info("4D Image (HyperVolume)");
@ -224,7 +235,9 @@ public class HDF5Reader implements PlugIn {
imp.setDimensions(1, (int) dimensions[1], (int) dimensions[0]); imp.setDimensions(1, (int) dimensions[1], (int) dimensions[0]);
imp.setOpenAsHyperStack(true); imp.setOpenAsHyperStack(true);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else if (numberOfDimensions == 3 && dimensions[2] == 3) { } else if (numberOfDimensions == 3 && dimensions[2] == 3) {
logger.info("2D RGB Image"); logger.info("2D RGB Image");
@ -247,7 +260,9 @@ public class HDF5Reader implements PlugIn {
imp = new CompositeImage(imp, CompositeImage.COMPOSITE); imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
imp.setOpenAsHyperStack(true); imp.setOpenAsHyperStack(true);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else if (numberOfDimensions == 3) { } else if (numberOfDimensions == 3) {
logger.info("3D Image"); logger.info("3D Image");
@ -322,7 +337,9 @@ public class HDF5Reader implements PlugIn {
stacks.add(stack); stacks.add(stack);
ImagePlus imp = new ImagePlusHDF5(filename + " " + datasetName, stack); ImagePlus imp = new ImagePlusHDF5(filename + " " + datasetName, stack);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else if (numberOfDimensions == 2) { } else if (numberOfDimensions == 2) {
logger.info("2D Image"); logger.info("2D Image");
@ -335,7 +352,9 @@ public class HDF5Reader implements PlugIn {
ImagePlus imp = new ImagePlus(filename + " " + datasetName, stack); ImagePlus imp = new ImagePlus(filename + " " + datasetName, stack);
imp.resetDisplayRange(); imp.resetDisplayRange();
imp.show(); if(showImage) {
imp.show();
}
} else { } else {
IJ.showStatus("Variable Dimension " + numberOfDimensions + " not supported"); IJ.showStatus("Variable Dimension " + numberOfDimensions + " not supported");