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https://github.com/paulscherrerinstitute/ch.psi.imagej.hdf5.git
synced 2025-04-20 05:00:03 +02:00
Implemented option to hide image when opening
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parent
70fa714aac
commit
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2
pom.xml
2
pom.xml
@ -3,7 +3,7 @@
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<modelVersion>4.0.0</modelVersion>
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<groupId>ch.psi</groupId>
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<artifactId>imagej.hdf5</artifactId>
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<version>0.11.0</version>
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<version>0.12.0</version>
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<dependencies>
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<dependency>
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@ -46,7 +46,12 @@ public class HDF5Reader implements PlugIn {
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* dataset=/your/path/to/dataset
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*
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*/
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public ImageStack open(String arg, boolean interactive, String filename, String nameOfDataset, boolean virtualstack) {
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return open(arg, interactive, filename, nameOfDataset, virtualstack, true);
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}
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public ImageStack open(String arg, boolean interactive, String filename, String nameOfDataset, boolean virtualstack, boolean showImage) {
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// Map arguments = HDF5Reader.parseArguments(arg);
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@ -118,7 +123,9 @@ public class HDF5Reader implements PlugIn {
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ImagePlus imp = new ImagePlus(filename, stack);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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stacks.add(stack);
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return stack; // TODO should return stacks instead of stack
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@ -166,7 +173,9 @@ public class HDF5Reader implements PlugIn {
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imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
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imp.setOpenAsHyperStack(true);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else if (numberOfDimensions == 4 && dimensions[3] == 3) {
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logger.info("3D RGB Image");
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@ -194,7 +203,9 @@ public class HDF5Reader implements PlugIn {
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imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
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imp.setOpenAsHyperStack(true);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else if (numberOfDimensions == 4) {
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logger.info("4D Image (HyperVolume)");
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@ -224,7 +235,9 @@ public class HDF5Reader implements PlugIn {
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imp.setDimensions(1, (int) dimensions[1], (int) dimensions[0]);
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imp.setOpenAsHyperStack(true);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else if (numberOfDimensions == 3 && dimensions[2] == 3) {
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logger.info("2D RGB Image");
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@ -247,7 +260,9 @@ public class HDF5Reader implements PlugIn {
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imp = new CompositeImage(imp, CompositeImage.COMPOSITE);
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imp.setOpenAsHyperStack(true);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else if (numberOfDimensions == 3) {
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logger.info("3D Image");
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@ -322,7 +337,9 @@ public class HDF5Reader implements PlugIn {
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stacks.add(stack);
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ImagePlus imp = new ImagePlusHDF5(filename + " " + datasetName, stack);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else if (numberOfDimensions == 2) {
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logger.info("2D Image");
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@ -335,7 +352,9 @@ public class HDF5Reader implements PlugIn {
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ImagePlus imp = new ImagePlus(filename + " " + datasetName, stack);
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imp.resetDisplayRange();
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imp.show();
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if(showImage) {
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imp.show();
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}
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} else {
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IJ.showStatus("Variable Dimension " + numberOfDimensions + " not supported");
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