Merge remote-tracking branch 'origin/developer' into ctb/continuous_RO

Fix/dbitreorder should only be defined for chip and xilinx

.gitea/workflows/rh8-native.yml

@@ -0,0 +1,29 @@
+name: Build on RHEL8
+
+on:
+  push:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: "ubuntu-latest"
+    container:
+      image: gitea.psi.ch/detectors/rhel8-detectors-dev
+    steps:
+      - name: Clone repository
+        run: |
+          echo Cloning ${{ github.ref_name }}
+          git clone https://${{secrets.GITHUB_TOKEN}}@gitea.psi.ch/${{ github.repository }}.git --branch=${{ github.ref_name }} .
+
+      - name: Build library 
+        run: |
+            mkdir build && cd build
+            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON 
+            make -j 2 
+
+      - name: C++ unit tests
+        working-directory: ${{gitea.workspace}}/build
+        run: ctest

.gitea/workflows/rh9-native.yml

@@ -0,0 +1,27 @@
+name: Build on RHEL9
+
+on:
+  push:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: "ubuntu-latest"
+    container:
+      image: gitea.psi.ch/detectors/rhel9-detectors-dev
+    steps:
+      - uses: actions/checkout@v4
+
+
+      - name: Build library 
+        run: |
+            mkdir build && cd build
+            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON
+            make -j 2 
+
+      - name: C++ unit tests
+        working-directory: ${{gitea.workspace}}/build
+        run: ctest

.github/workflows/cmake.yaml

@@ -1,4 +1,4 @@
-name: CMake
+name: Native CMake Build
 
 on: [push, pull_request]
 
@@ -14,7 +14,13 @@ jobs:
     runs-on: ubuntu-latest
     name: Configure and build using cmake
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.12
+          cache: 'pip'
+      - run: pip install pytest numpy
+
       - uses: awalsh128/cache-apt-pkgs-action@latest
         with:
           packages: libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev libpng-dev libtiff-dev
@@ -27,12 +33,15 @@ jobs:
 
       - name: Build
         # Build your program with the given configuration
-        run: cmake --build ${{github.workspace}}/build -j2 --config ${{env.BUILD_TYPE}}
+        run: cmake --build ${{github.workspace}}/build -j4 --config ${{env.BUILD_TYPE}}
 
-      - name: Test
+      - name: C++ unit tests
         working-directory: ${{github.workspace}}/build
-        # Execute tests defined by the CMake configuration.
-        # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
         run: ctest -C ${{env.BUILD_TYPE}} -j1
 
+      - name: Python unit tests
+        working-directory: ${{github.workspace}}/build/bin
+        run: |
+          python -m pytest ${{github.workspace}}/python/tests
+
 

.github/workflows/conda_library.yaml

@@ -0,0 +1,42 @@
+name: Build slsdetlib
+
+on: [pull_request]
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [ubuntu-latest, ] # macos-12, windows-2019]
+        python-version: ["3.12",]
+
+    runs-on: ${{ matrix.platform }}
+
+    # The setup-miniconda action needs this to activate miniconda
+    defaults:
+      run:
+        shell: "bash -l {0}"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Get conda
+        uses: conda-incubator/setup-miniconda@v3.0.4
+        with:
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+
+      - name: Prepare
+        run: conda install conda-build conda-verify pytest anaconda-client
+
+      - name: Disable upload
+        run: conda config --set anaconda_upload no
+
+      - name: Build
+        run: conda build conda-recipes/main-library --output-folder build_output
+
+      - name: Upload all Conda packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: conda-packages
+          path: build_output/**  # Uploads all packages

.github/workflows/conda_python.yaml

@@ -0,0 +1,42 @@
+name: slsdet
+
+on: [pull_request]
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [ubuntu-latest, ] # macos-12, windows-2019]
+        python-version: ["3.12",]
+
+    runs-on: ${{ matrix.platform }}
+
+    # The setup-miniconda action needs this to activate miniconda
+    defaults:
+      run:
+        shell: "bash -l {0}"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Get conda
+        uses: conda-incubator/setup-miniconda@v3.0.4
+        with:
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+
+      - name: Prepare
+        run: conda install conda-build conda-verify pytest anaconda-client
+
+      - name: Disable upload
+        run: conda config --set anaconda_upload no
+
+      - name: Build
+        run: conda build conda-recipes/python-client --output-folder build_output 
+
+      - name: Upload all Conda packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: conda-packages
+          path: build_output/**  # Uploads all packages

CMakeFiles/cmake.check_cache

@@ -1 +0,0 @@
-# This file is generated by cmake for dependency checking of the CMakeCache.txt file

CMakeLists.txt

@@ -1,6 +1,6 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-cmake_minimum_required(VERSION 3.14)
+cmake_minimum_required(VERSION 3.15)
 project(slsDetectorPackage)
 
 # Read VERSION file into project version
@@ -29,20 +29,44 @@ include(FetchContent)
 option(SLS_FETCH_ZMQ_FROM_GITHUB "Fetch zmq from github" OFF)
 option(SLS_FETCH_PYBIND11_FROM_GITHUB "Fetch pybind11 from github" OFF)
 
+
+
+# Allow FetchContent_Populate to be called with a single argument
+# otherwise deprecated warning is issued
+# Note: From cmake 3.28 we can pass EXCLUDE_FROM_ALL to FetchContent_Declare
+# and avoid direct use of Populate
+if (${CMAKE_VERSION} VERSION_GREATER_EQUAL "3.30")
+    cmake_policy(SET CMP0169 OLD) 
+endif()
+
+# Patch libzmq to set minimum cmake version to 3.15 to avoid warnings
+# with newer cmake versions
+# Patch is applied in the FetchContent_Declare
+set(SLS_LIBZMQ_VERSION "4.3.4")
+
+find_program(PATCH_EXECUTABLE patch)
+if(NOT PATCH_EXECUTABLE)
+    message(FATAL_ERROR "The 'patch' tool is required for patching lib zeromq. Please install it.")
+endif()
+
 if(SLS_FETCH_ZMQ_FROM_GITHUB)
     # Opt in to pull down a zmq version from github instead of
-    # using the bundled verison
+    # using the bundled version
     FetchContent_Declare(
         libzmq
         GIT_REPOSITORY https://github.com/zeromq/libzmq.git
-        GIT_TAG        v4.3.4
+        GIT_TAG        v${SLS_LIBZMQ_VERSION}
+        PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
+        UPDATE_DISCONNECTED 1
     )
 else()
     # Standard behaviour use libzmq included in this repo (libs/libzmq)
     FetchContent_Declare(
         libzmq
-        URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-4.3.4.tar.gz
+        URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-${SLS_LIBZMQ_VERSION}.tar.gz
         URL_HASH MD5=cc20b769ac10afa352e5ed2769bb23b3
+        PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
+        UPDATE_DISCONNECTED 1
     )
 endif()
 
@@ -54,6 +78,11 @@ set(ENABLE_CPACK OFF CACHE BOOL "")
 set(ENABLE_CLANG OFF CACHE BOOL "")
 set(ENABLE_CURVE OFF CACHE BOOL "")
 set(ENABLE_DRAFTS OFF CACHE BOOL "")
+set(ENABLE_PRECOMPILED OFF CACHE BOOL "")
+set(WITH_DOC OFF CACHE BOOL "")
+set(WITH_DOCS OFF CACHE BOOL "")
+
+ 
 
 # Using GetProperties and Populate to be able to exclude zmq
 # from install (not possible with FetchContent_MakeAvailable(libzmq))
@@ -191,7 +220,7 @@ endif()
 # to control options for the libraries
 if(NOT TARGET slsProjectOptions)
     add_library(slsProjectOptions INTERFACE)
-    target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+   target_compile_features(slsProjectOptions INTERFACE cxx_std_17)
 endif()
 
 if (NOT TARGET slsProjectWarnings)
@@ -249,8 +278,8 @@ endif()
 if(SLS_USE_SANITIZER)
     target_compile_options(slsProjectOptions INTERFACE -fsanitize=address,undefined -fno-omit-frame-pointer)
     target_link_libraries(slsProjectOptions INTERFACE -fsanitize=address,undefined)
-    # target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread)
-    # target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
+    #target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread -fno-omit-frame-pointer)
+    #target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
 endif()
 
 
@@ -304,7 +333,8 @@ if (SLS_USE_INTEGRATION_TESTS)
 endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
-    find_package (Python 3.8 COMPONENTS Interpreter Development)
+    find_package (Python 3.8 COMPONENTS Interpreter Development.Module REQUIRED)
+    set(PYBIND11_FINDPYTHON ON) # Needed for RH8
     if(SLS_FETCH_PYBIND11_FROM_GITHUB)
         FetchContent_Declare(
             pybind11
@@ -329,9 +359,15 @@ if (SLS_USE_CTBGUI)
     add_subdirectory(pyctbgui)
 endif(SLS_USE_CTBGUI)
 
-configure_file( .clang-tidy  
-    ${CMAKE_BINARY_DIR}/.clang-tidy  
-)
+# Workaround for file note being copied to build directory
+# when issuing a python -m build
+# TODO! Proper fix
+if(EXISTS ".clang-tidy")
+    configure_file(.clang-tidy  
+        ${CMAKE_BINARY_DIR}/.clang-tidy  
+    )
+endif()
+
 
 if (SLS_BUILD_EXAMPLES)
     add_subdirectory(sample)

RELEASE.txt

@@ -39,7 +39,6 @@ This document describes the differences between vx.x.x and vx.0.2
     Jungfrau    9.0.0
     Mythen3     9.0.0
     Gotthard2   9.0.0
-    Gotthard    9.0.0
     Moench      9.0.0
   
 
@@ -75,9 +74,6 @@ This document describes the differences between vx.x.x and vx.0.2
 
     Moench      26.10.2023 (v2.0)                   (updated in 9.0.0)
 
-    Gotthard    08.02.2018 (50um and 25um Master)
-                09.02.2018 (25 um Slave) 
-
 
     Detector Upgrade
     ----------------
@@ -90,8 +86,6 @@ This document describes the differences between vx.x.x and vx.0.2
     Gotthard2  via command <.rbf>
     Moench     via command <.pof>
 
-    Gotthard cannot be upgraded remotely  
-
     Except Eiger, 
         upgrade 
             Using command 'programfpga' or

conda-recipe/build_pylib.sh

@@ -1,11 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-echo "|<-------- starting python build"
-
-cd python
-
-# copy VERSION into slsdet for installation
-cp ../VERSION slsdet/VERSION
-
-${PYTHON} setup.py install 

conda-recipe/conda_build_config.yaml

@@ -1,8 +0,0 @@
-python:
-    - 3.8
-    - 3.9
-    - 3.10
-    - 3.11 
-    - 3.12
-    - 3.13
-

conda-recipe/copy_ctbgui.sh

@@ -1,11 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-mkdir $PREFIX/lib
-mkdir $PREFIX/bin
-mkdir $PREFIX/include
-
-
-
-cp build/bin/ctbGui $PREFIX/bin/.
-cp build/bin/libctbRootLib.so $PREFIX/lib/.
-

conda-recipe/meta.yaml

@@ -1,125 +0,0 @@
-package:
-  name: sls_detector_software
-  version: {{ environ.get('GIT_DESCRIBE_TAG', '') }}
-
-
-source:
-  path: ..
-
-build:
-  number: 0
-  binary_relocation: True
-  rpaths: 
-    - lib/
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{compiler('cxx')}}
-    - cmake
-    - qt 5.*
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - {{ cdt('mesa-libgl-devel') }}      # [linux]
-    - {{ cdt('mesa-libegl-devel') }}     # [linux]
-    - {{ cdt('mesa-dri-drivers') }}      # [linux]
-    - {{ cdt('libselinux') }}            # [linux]
-    - {{ cdt('libxdamage') }}            # [linux]
-    - {{ cdt('libxxf86vm') }}            # [linux]
-    - expat
-
-  host:
-    - libstdcxx-ng
-    - libgcc-ng
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - expat
-
-  run:
-    - libstdcxx-ng
-    - libgcc-ng 
-
-
-outputs:
-  - name: slsdetlib
-    script: copy_lib.sh
-
-    requirements:
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - libstdcxx-ng
-        - libgcc-ng
-
-      run: 
-        - libstdcxx-ng
-        - libgcc-ng
-
-  - name: slsdet
-    script: build_pylib.sh
-
-    requirements:
-      build:
-        - python
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - setuptools
-        - pybind11=2.13
-
-      host:
-        - python
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - setuptools
-        - pybind11=2.13
-
-
-      run:
-        - libstdcxx-ng
-        - libgcc-ng
-        - python
-        - numpy
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-    test:
-      imports:
-        - slsdet
-
-
-  - name: slsdetgui
-    script: copy_gui.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - qt 5.*
-        - expat
-
-  - name: moenchzmq
-    script: copy_moench.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - expat

conda-recipe/run_test.sh

@@ -1,3 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-ctest -j2

conda-recipes/main-library/build.sh

@@ -8,7 +8,7 @@ if [ ! -d "install" ]; then
     mkdir install
 fi
 cd build
-cmake .. \
+cmake .. -G Ninja \
       -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \
       -DCMAKE_INSTALL_PREFIX=install \
       -DSLS_USE_TEXTCLIENT=ON \
@@ -18,7 +18,7 @@ cmake .. \
       -DSLS_USE_TESTS=ON \
       -DSLS_USE_PYTHON=OFF \
       -DCMAKE_BUILD_TYPE=Release \
-      -DSLS_USE_HDF5=OFF\
+      -DSLS_USE_HDF5=OFF \
      
 NCORES=$(getconf _NPROCESSORS_ONLN)
 echo "Building using: ${NCORES} cores"

conda-recipes/main-library/conda_build_config.yaml

@@ -0,0 +1,13 @@
+
+c_compiler:
+  - gcc                        # [linux]
+
+c_stdlib:
+  - sysroot                    # [linux]
+
+cxx_compiler:
+  - gxx                        # [linux]
+
+
+c_stdlib_version:              # [linux]
+  - 2.17                       # [linux]

conda-recipes/main-library/copy_lib.sh

@@ -4,7 +4,6 @@
 mkdir -p $PREFIX/lib
 mkdir -p $PREFIX/bin
 mkdir -p $PREFIX/include/sls
-# mkdir $PREFIX/include/slsDetectorPackage
 
 #Shared and static libraries
 cp build/install/lib/* $PREFIX/lib/
@@ -15,8 +14,10 @@ cp build/install/bin/sls_detector_acquire_zmq $PREFIX/bin/.
 cp build/install/bin/sls_detector_get $PREFIX/bin/.
 cp build/install/bin/sls_detector_put $PREFIX/bin/.
 cp build/install/bin/sls_detector_help $PREFIX/bin/.
+cp build/install/bin/sls_detector $PREFIX/bin/.
 cp build/install/bin/slsReceiver $PREFIX/bin/.
 cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
+cp build/install/bin/slsFrameSynchronizer $PREFIX/bin/.
 
 
 cp build/install/include/sls/* $PREFIX/include/sls

conda-recipes/main-library/meta.yaml

@@ -0,0 +1,77 @@
+source:
+  path: ../..
+
+{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
+package:
+  name: sls_detector_software
+  version: {{ version }} 
+  
+build:
+  number: 0
+  binary_relocation: True
+  rpaths: 
+    - lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ stdlib("c") }}
+    - {{ compiler('cxx') }}
+    - git
+    - cmake
+    - ninja
+    - qt 5.*
+
+  host:
+    - libstdcxx-ng
+    - libgcc-ng
+    - libgl-devel  # [linux]
+    - libtiff
+    - zlib
+
+  run:
+    - libstdcxx-ng
+    - libgcc-ng 
+
+
+outputs:
+  - name: slsdetlib
+    script: copy_lib.sh
+
+    requirements:
+      build:
+        - {{ compiler('c') }}
+        - {{ stdlib("c") }}
+        - {{ compiler('cxx') }}
+
+      run: 
+        - libstdcxx-ng
+        - libgcc-ng
+
+
+  - name: slsdetgui
+    script: copy_gui.sh
+    requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+
+      run:
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+        - qt 5.*
+
+
+  - name: moenchzmq
+    script: copy_moench.sh
+    requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+
+
+      run:
+        - {{ pin_subpackage('slsdetlib', exact=True) }}

conda-recipes/python-client/conda_build_config.yaml

@@ -0,0 +1,16 @@
+python:
+    - 3.11 
+    - 3.12
+    - 3.13
+
+c_compiler:
+  - gcc                        # [linux]
+
+c_stdlib:
+  - sysroot                    # [linux]
+
+cxx_compiler:
+  - gxx                        # [linux]
+
+c_stdlib_version:              # [linux]
+  - 2.17                       # [linux]

conda-recipes/python-client/meta.yaml

@@ -0,0 +1,45 @@
+source:
+  path: ../..
+
+{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
+package:
+  name: slsdet
+  version: {{ version }} 
+
+build:
+  number: 0
+  script:
+    - unset CMAKE_GENERATOR && {{ PYTHON }} -m pip install . -vv  # [not win]
+
+requirements:
+  build:
+    - python {{python}}
+    - {{ compiler('c') }}
+    - {{ stdlib("c") }}
+    - {{ compiler('cxx') }}
+
+  host:
+    - cmake
+    - ninja
+    - python {{python}}
+    - pip
+    - scikit-build-core
+    - pybind11 >=2.13.0
+    - fmt
+    - zeromq
+    - nlohmann_json
+    - catch2
+
+  run:
+    - python {{python}}
+    - numpy
+
+
+test:
+  imports:
+    - slsdet
+
+
+about:
+  summary: An example project built with pybind11 and scikit-build.
+  # license_file: LICENSE

docs/CMakeLists.txt

@@ -40,6 +40,7 @@ set(SPHINX_SOURCE_FILES
   src/pydetector.rst
   src/pyenums.rst
   src/pyexamples.rst
+  src/pyPatternGenerator.rst
   src/servers.rst
   src/receiver_api.rst
   src/result.rst
@@ -53,6 +54,7 @@ set(SPHINX_SOURCE_FILES
   src/serverdefaults.rst
   src/quick_start_guide.rst
   src/troubleshooting.rst
+  src/pattern.rst
   src/receivers.rst
   src/slsreceiver.rst
   src/udpheader.rst

docs/conf.py.in

@@ -63,4 +63,4 @@ html_static_path = ['static']
 
 
 def setup(app):
-    app.add_stylesheet('css/extra.css')  # may also be an URL
+    app.add_css_file('css/extra.css')  # may also be an URL

docs/gen_server_doc.py.in

@@ -21,7 +21,7 @@ print('\n\n\n\n SERVER CSV')
 
 src = Path('@CMAKE_SOURCE_DIR@')/'slsDetectorServers/'
 detectors = ['Mythen3', 'Gotthard2', 'Eiger', 
-            'Jungfrau', 'Moench', 'Gotthard', 'Ctb']
+            'Jungfrau', 'Moench', 'Ctb']
 
 
 for det in detectors:

docs/src/binaryfileformat.rst

@@ -320,61 +320,6 @@ Moench
         }
     }
 
-Gotthard I
-^^^^^^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 15:16:19 2024",
-        "Detector Type": "Gotthard",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 2560,
-        "Pixels": {
-            "x": 1280,
-            "y": 1
-        },
-        "Max Frames Per File": 20000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Exptime": "1.00001ms",
-        "Period": "1s",
-        "Detector Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295
-        },
-        "Frames in File": 1,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
 Chip Test Board
 ^^^^^^^^^^^^^^^
 
@@ -414,6 +359,7 @@ Chip Test Board
         "Digital Flag": 0,
         "Digital Samples": 1000,
         "Dbit Offset": 0,
+        "Dbit Reorder": 1, 
         "Dbit Bitset": 0,
         "Transceiver Mask": "0x3",
         "Transceiver Flag": 0,

docs/src/commandline.rst

@@ -4,11 +4,54 @@ Command line interface
 Usage
 -------------
 
-Commands can be used either with sls_detector_get or sls_detector_put
+The syntax is *'[detector index]-[module index]:[command]'*, where the indices are by default '0', when not specified.
+
+Module index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Modules are indexed based on their order in the hostname command. They are used to configure a specific module within a detector and are followed by a ':' in syntax.
+
+    .. code-block::
+
+        # Applies to all modules of detector 0
+        sls_detector_put exptime 5s
+
+        # Applies to only the 4th module
+        sls_detector_put 3:exptime 5s
+
+
+Detector index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+This index is useful when configuring multiple detectors from a single host. Each detector uses a unique shared memory identified by a detector index, derived again from the hostname command. It is followed by a '-'. 
+
+    .. code-block::
+
+        # For detector with index 2 in shared memory
+        sls_detector_put 2-hostname bchip133+bchip123+bchip456
+        
+        # Without '-', the detector index defaults to 0
+        sls_detector_put hostname bchip133+bchip123+bchip456
+
+        # Accessing all modules with detector index 2
+        sls_detector_put 2-exptime
+
+        # Starting acquisition only for detector with index 2
+        sls_detector_put 2-start
+
+        # Applies only to the 2nd detector, 4th module
+        sls_detector_put 1-3:exptime 5s
+
+
+Command Execution
+^^^^^^^^^^^^^^^^^^^^^^^
+Commands can be executed using:
+
+*   **sls_detector_put**: setting values
+*   **sls_detector_get**: getting values
+*   **sls_detector**: automatically infers based on the number of arguments.
+*   **sls_detector_help**: gets help on the specific command
+*   **sls_detector_acquire**: initiates acquisition with the detector. This command blocks until the entire acquisition process is completed.
 
-.. code-block::
 
-    sls_detector_get exptime
 
 Help
 --------
@@ -28,12 +71,15 @@ Help
     # list of deprecated commands
     list deprecated
 
-    # autocompletion
-    # bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the 
-    # main package folder to enable auto completion of commands and arguments 
-    # for the command line on that shell.
-    source bash_autocomplete.sh
 
+Autocompletion
+---------------
+
+bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the main package folder to enable auto completion of commands and arguments for the command line on that shell.
+
+.. code-block::
+
+    source bash_autocomplete.sh
   
 
 Commands

docs/src/detector.rst

@@ -13,7 +13,6 @@ containing results from all modules. (:ref:`Result class<Result Class>`)
 
 Here are some :ref:`examples <Cplusplus Api Examples>` on how to use the API.
 
-.. _Cplusplus Api Examples:
 .. doxygenclass:: sls::Detector
    :members:
    :undoc-members:

docs/src/firmware.rst

@@ -131,42 +131,6 @@ Program from console
 
 
 
-Gotthard I
------------
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-.. _firmware upgrade using blaster for blackfin:
-
-Upgrade
-^^^^^^^^
-.. warning ::
-    | Gotthard firmware cannot be upgraded remotely and requires the use of USB-Blaster.
-    | It is generally updated by us.
-
-#. Download `Altera Quartus software or Quartus programmer <https://fpgasoftware.intel.com/20.1/?edition=standard&platform=linux&product=qprogrammer#tabs-4>`__.
-   
-
-#. Start Quartus programmer, click on Hardware Setup. In the "Currently selected hardware" window, select USB-Blaster.
-
-#. In the Mode combo box, select "Active Serial Programming".
-
-#. Plug the end of your USB-Blaster with the adaptor provided to the connector 'AS config' on the Gotthard board.
-
-#. Click on 'Add file'. Select programming (pof) file provided by us.
-
-#. Check "Program/Configure" and "Verify". Push the start button. Wait until the programming process is finished.
-
-#. In case of error messages, check the polarity of cable (that pin1 corresponds) and that the correct programming connector is selected.
-
-#. Reboot the detector.
-
-
 Mythen III
 -----------
 
@@ -396,7 +360,3 @@ How to get back mtd3 drive remotely (udpating kernel)
             more /proc/mtd # verify mtd3 is listed
             
 
-Last Resort using USB Blaster
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If none of these steps work, the last resort might be physically upgrading the firmware using a USB blaster, which also requires opening up the detector. Instructions for all the blackfin detectors are the same as the one for :ref:`gotthard firmware upgrade <firmware upgrade using blaster for blackfin>`.

docs/src/index.rst

@@ -36,10 +36,12 @@ Welcome to slsDetectorPackage's documentation!
     pydetector
     pyenums
     pyexamples
+    pyPatternGenerator
+    pattern
 
 .. toctree::
     :caption: Command line
-    :maxdepth: 2
+    :maxdepth: 1
 
     commandline  
     quick_start_guide

docs/src/masterfileattributes.rst

@@ -1,5 +1,6 @@
 
 .. _master file attributes:
+
 Master File Attributes
 =======================
 
@@ -287,56 +288,6 @@ Moench
    | Frame Header Format   | Expected frame header format for the data files |
    +-----------------------+-------------------------------------------------+
 
-Gotthard I
-^^^^^^^^^^^
-
-   +-----------------------+-------------------------------------------------+
-   | **Key**               | **Description**                                 |
-   +-----------------------+-------------------------------------------------+
-   | Version               | Version of the master file                      |
-   |                       | Current value:8.0                               |
-   +-----------------------+-------------------------------------------------+
-   | Timestamp             | Timestamp of creation of master file            |
-   +-----------------------+-------------------------------------------------+
-   | Detector Type         | Detector type                                   |
-   +-----------------------+-------------------------------------------------+
-   | Timing Mode           | Timing Mode                                     |
-   +-----------------------+-------------------------------------------------+
-   | Geometry              | Number of UDP ports in x and y dimension for    |
-   |                       | complete detector                               |
-   +-----------------------+-------------------------------------------------+
-   | Image Size in bytes   | Image size in bytes per UDP port                |
-   +-----------------------+-------------------------------------------------+
-   | Pixels                | Number of pixels in x and y dimension           |
-   |                       | per UDP port                                    |
-   +-----------------------+-------------------------------------------------+
-   | Max Frames Per File   | Maximum frames per file                         |
-   +-----------------------+-------------------------------------------------+
-   | Frame Discard Policy  | Receiever Frame discard policy                  |
-   |                       | for partial frames                              |
-   +-----------------------+-------------------------------------------------+
-   | Frame Padding         | Receiver Frame padding enable                   |
-   |                       | for partial frames                              |
-   +-----------------------+-------------------------------------------------+
-   | Scan Parameters       | Scanning mode on detector                       |
-   +-----------------------+-------------------------------------------------+
-   | Total Frames          | Total number of frames and triggers expected    |
-   +-----------------------+-------------------------------------------------+
-   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
-   +-----------------------+-------------------------------------------------+
-   | Exptime               | Exposure time                                   |
-   +-----------------------+-------------------------------------------------+
-   | Period                | Period between frames                           |
-   +-----------------------+-------------------------------------------------+
-   | Detector Roi          | Roi in detector restricted to an ADC.           |
-   |                       | Includes xmax                                   |
-   +-----------------------+-------------------------------------------------+
-   | Burst Mode            | Burst mode of detector                          |
-   +-----------------------+-------------------------------------------------+
-   | Frames in File        | Number of frames written to file by Receiver 0  |
-   +-----------------------+-------------------------------------------------+
-   | Frame Header Format   | Expected frame header format for the data files |
-   +-----------------------+-------------------------------------------------+
 
 Chip Test Board
 ^^^^^^^^^^^^^^^
@@ -394,6 +345,9 @@ Chip Test Board
    +-----------------------+-------------------------------------------------+
    | Dbit Offset           | Digital offset of valid data in bytes           |
    +-----------------------+-------------------------------------------------+
+   | Dbit Reorder          | Reorder such that it groups each signal (0-63)  |
+   |                       | from all the different samples together         |                 
+   +-----------------------+-------------------------------------------------+
    | Dbit Bitset           | Digital 64 bit mask of bits enabled in receiver |
    +-----------------------+-------------------------------------------------+
    | Transceiver Mask      | Mask of channels enabled in Transceiver         |

docs/src/pattern.rst

@@ -0,0 +1,122 @@
+Pattern
+========================
+
+This is a test and development feature implemented only for Ctb, Xilinx_Ctb and Mythen3.
+
+A pattern is a sequence of 64-bit words which is executed using a clock on the FPGA. Each of the 64 bits is connected to a pin or internal signal of the FPGA. The purpose of a pattern is to provide a way to change these 64 signals with precise timing. Commands run by the detector server could manipulate the same signals as the pattern, but they cannot enforce a change in a specific clock cycle.
+
+**Usage**
+
+A pattern is written to memory on the FPGA using the patword command.
+
+.. code-block::
+
+   patword 0x0000 0x000000000000000A
+   patword 0x0001 0x000000000000000B
+   patword 0x0002 0x000000000000000C
+   patword 0x0003 0x000000000000000D
+   patword 0x0004 0x000000000000000E
+
+The example above writes a five-word pattern into FPGA memory. The first argument is the memory address, the second argument is the content to be written into this address. Before executing a pattern one has to set the address limits of the pattern:
+
+.. code-block::
+
+   patlimits 0x0000 0x0004
+
+This instructs the firmware to execute the commands from address 0 to 4 (including 0 and 4). The execution can be started from the pyctbgui or with the commands
+
+.. code-block::
+
+   start [Ctb, Xilinx_Ctb]
+   patternstart [Mythen3]
+
+The maximal number of patword addresses is 8192. However, it is possible to extend the length of the pattern sequence using loops and wait commands. Loops can be configured with the following commands:
+
+.. code-block::
+
+   patloop 0 0x0001 0x0003
+   patnloop 0 7
+
+The first argument of both commands is the ID of the loop. Ctb and Xilinx_Ctb can have 6 loops (ID 0-5), Mythen3 can have 4 loop definitions. The commands above configure the loop with ID 0 to run 7 times and jump from the patword with address 3 to the patword with address 1. Important: If patnloop is set to 1, the addresses 0x1-0x3 will execute exactly once; if it is set to 0, the pattern addresses will be skipped.
+
+The same idea is used to introduce wait times. The example below causes the patword at address 0x0002 to be active for 9 clock cycles before the execution continues.
+
+.. code-block::
+
+   patwait 0 0x0002
+   patwaittime 0 9
+
+Waits can be placed inside a loop and loops can be nested.
+
+**patioctrl**
+
+The function of each bit in the sequence of 64-bit words depends on the connected detector and firmware version. Some of the 64 bits might connect directly to pads of a chip. The patioctrl command is used to configure the direction of some of these signals (not all of them !! See tables below). Signals where the corresponding bit in the argument of patioctrl is set to 1 will be driven from the FPGA.
+
+**patsetbit and patmask**
+
+The functions patsetbit and patmask can be used to ignore a specific bit of the pattern.
+Example:
+
+.. code-block::
+
+   patmask 0x0101
+   patsetbit 0x0001
+
+Patmask configures bit 0 and 8 of the pattern to be set to their value in patsetbit. These bits will be ignored during pattern execution and will always be 0 (bit 8) and 1 (bit 0).
+
+The mappings of bit positions in the pattern word to signals/pads of the FPGA are listed below for the three detector types where patterns are used. In the case of the two CTB's, connections of the signals to actual pads of a chip depend on the layout of the used detector adapter board. Therefore, each type of detector adapter board adds an additional mapping layer.
+
+**CTB Pattern Bit Mapping**
+
+.. table:: 
+
+   +----+---+------+----+----------+-------------------+----------------+
+   | 63 | 62| 61-57| 56 |  55-48   |  47-32            |  31-0          |
+   +----+---+------+----+----------+-------------------+----------------+
+   |  A |  D|  --- |  T | EXTIO    | DO, stream source | DIO            |
+   +----+---+------+----+----------+-------------------+----------------+
+
+DIO: Driving the 32 FPGA pins corresponding to the lowest 32 bits of the patioctrl command. If bits in patioctrl are 0, the same bit positions in DIO will switch to input pins and connect to dbit sampling. Additionally, some of these 32 bits have an automatic override by detector-specific statemachines which is active whenever one of these statemachines is running (currently bits 7,8,11,14 and 20).
+
+DO: Directly connected to 16 FPGA pins. Output only. Not influenced by patioctrl. Also connected to bit 47-32 in all Ctb dbit samples. All of them can be used as dbit sample trigger. In addition, every bit of DO can be selected as trigger for sending out a udp packet with samples to the receiver.
+
+EXTIO: Similar to DIO, but not used as input to the fpga. With the corresponding patioctrl bits set to 0 these pins will switch to a high impedance mode and be ignored by the firmware.
+
+T: trigger output
+
+D: enable signal for digital sampling
+
+A: adc enable
+
+**Xilinx_CTB Pattern Bit Mapping**
+
+.. table:: 
+
+   +-------+----------------+
+   | 63-32 |  31-0          |
+   +-------+----------------+
+   |  ---  | DIO            |
+   +-------+----------------+
+
+DIO: Driving the 32 FPGA pins corresponding to the lowest 32 bits of the patioctrl command. If bits in patioctrl are 0, the same bit positions in DIO will switch to input pins and connect to dbit sampling. Additionally, some of these 32 bits have an automatic override by detector-specific statemachines which is active whenever these sm's are running (currently bits 7,8,11,14 and 20).
+
+
+**Mythen3 Pattern Bit Mapping**
+
+.. table:: 
+
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+   | 63-33 |  32    | 31-25 |  24    | 23         |  22      | 21       | 20  | 19  |
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+   |  ---  | signARD|  ---  | CHSclk |  cnt_rst   |  sto_rst | STATLOAD | STO | SIN |
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+
+.. table:: 
+
+   +---------+-----+-------+-------+----+-------+---------+--------+
+   | 18      | 17  | 16-14 | 13    | 12 | 11    | 10      | 9-0    |
+   +---------+-----+-------+-------+----+-------+---------+--------+
+   | SR_MODE | clk | EN    | PULSE | RD | CHSIN | ANAMode | TBLOAD |
+   +---------+-----+-------+-------+----+-------+---------+--------+
+
+For Mythen3 the pattern word only connects to output pins of the FPGA when the pattern is running. Afterwards the signals will switch back to other logic in the FPGA. Both CTB's hold the last executed pattern word until a new pattern is started.

docs/src/pyPatternGenerator.rst

@@ -0,0 +1,34 @@
+PatternGenerator
+=====================================================
+
+Python class to generate patterns for the Chip Test Board.
+
+.. code-block:: python
+
+    from slsdet import PatternGenerator
+
+    p = PatternGenerator()
+    p.SB(5)
+    p.PW()
+    p.SB(8,9)
+    p.PW()
+    p.CB(5)
+
+Created a pattern like this:
+
+.. code-block:: bash
+
+    patword 0x0000 0x0000000000000020
+    patword 0x0001 0x0000000000000320
+    patword 0x0002 0x0000000000000300
+    patioctrl 0x0000000000000000
+    patlimits 0x0000 0x0002
+    ...
+
+.. py:currentmodule:: slsdet
+
+.. autoclass:: PatternGenerator
+    :members:  
+    :undoc-members:
+    :show-inheritance:
+    :inherited-members:

docs/src/quick_start_guide.rst

@@ -128,6 +128,10 @@ For Multiple Modules
         # set file path
         fpath /tmp
 
+.. note ::   
+    The **hostname** and **detsize** command in a multi module system can affect the row and column values in the udp/zmq header. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on. 
+
+    
 Gui
 ----
 

docs/src/serverdefaults.rst

@@ -89,18 +89,3 @@ DACS
    :widths: 35, 35
    :header-rows: 1
 
-Gotthard
--------------
-
-.. csv-table:: Default values
-   :file: gotthard.csv
-   :widths: 35, 35
-   :header-rows: 1
-
-DACS
-^^^^^^^^^^^^^
-
-.. csv-table:: Gotthard DACS
-   :file: gotthard-dacs.csv
-   :widths: 35, 35
-   :header-rows: 1

docs/src/servers.rst

@@ -27,25 +27,24 @@ Arguments
          -p, --port <port>        : TCP communication port with client. 
          -g, --nomodule           : [Mythen3][Gotthard2] 
                                     Generic or No Module mode. Skips detector type checks. 
-         -f, --phaseshift <value> : [Gotthard] only. Sets phase shift. 
          -d, --devel              : Developer mode. Skips firmware checks. 
          -u, --update             : Update mode. Skips firmware checks and initial detector setup. 
-         -i, --ignore-config      : [Eiger][Jungfrau][Gotthard][Gotthard2][Moench] 
+         -i, --ignore-config      : [Eiger][Jungfrau][Gotthard2][Moench] 
                                     Ignore config file. 
-         -m, --master <master>    : [Eiger][Mythen3][Gotthard][Gotthard2] 
+         -m, --master <master>    : [Eiger][Mythen3][Gotthard2] 
                                     Set Master to 0 or 1. Precedence over config file. Only for virtual servers except Eiger. 
          -t, --top <top>          : [Eiger] Set Top to 0 or 1. Precedence over config file. 
          -s, --stopserver         : Stop server. Do not use as it is created by control server 
 
 
 .. _Automatic start servers:
+
 Automatic start 
 ------------------
 
 One can start the on-board detector server automatically upon powering on the board.
 
-#. Create a soft link to the binary on board 
-   :
+#. Create a soft link to the binary on board:
       .. code-block:: bash
       
          ln -sf someDetectorServervx.x.x someDetectorServer
@@ -65,7 +64,7 @@ One can start the on-board detector server automatically upon powering on the bo
          /home/root/executables/eigerDetectorServer &> /dev/null &
          exit 0
 
-   Jungfrau | Moench | CTB | Gotthard I
+   Jungfrau | Moench | CTB
       .. code-block:: bash
 
          # Edit inittab on board
@@ -87,8 +86,7 @@ One can start the on-board detector server automatically upon powering on the bo
          /root/xxxDetectorServer >> /dev/null &
 
 
-#. Sync, reboot and verify
-   :
+#. Sync, reboot and verify:
       .. code-block:: bash
       
          sync

docs/src/troubleshooting.rst

@@ -385,14 +385,6 @@ Cannot get data without a module attached
 You cannot get data without a module attached as a specific pin is floating. Attach module to get data.
 
 
-Gotthard
-----------
-
-
-Missing first frame or next frame after a delay
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Connect the data link from the Module directly to receiver pc or to a private network.
-
 
 Mythen3
 --------

docs/src/udpheader.rst

@@ -73,9 +73,9 @@ Description
 
 * **modId**: module ID picked up from det_id_[detector type].txt on the detector cpu.
 
-* **row**: row position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command.
+* **row**: row position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
 
-* **column**: column position of the module in the detector system.  It is calculated by the order of the module in hostname command, as well as the detsize command.
+* **column**: column position of the module in the detector system.  It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
 
 * **detType**: detector type from enum of detectorType in the package.
 
@@ -92,14 +92,14 @@ Detector Enum
     ================    ========
     GENERIC             0
     EIGER               1
-    GOTTHARD            2    
+    GOTTHARD*           2    
     JUNGFRAU            3    
     CHIPTESTBOARD       4        
     MOENCH              5
     MYTHEN3             6
     GOTTHARD2           7    
     ================    ========
-
+    * deprecated since v10.0.0
 
 
 Previous Versions

docs/src/virtualserver.rst

@@ -22,7 +22,6 @@ Binaries
 
         eigerDetectorServer_virtual
         jungfrauDetectorServer_virtual
-        gotthardDetectorServer_virtual
         gotthard2DetectorServer_virtual
         mythen3DetectorServer_virtual
         moenchDetectorServer_virtual

examples/gotthard.config

@@ -1,12 +0,0 @@
-# detector hostname
-hostname bchip007
-
-# receiver pc hostname of 1Gb IP of the machine
-rx_hostname my_receiver_hostname
-
-# output directory
-fpath  /bigRAID/datadir_gotthard/rec_test_data
-
-# high voltage
-highvoltage 120
-

libs/libzmq/libzmq_cmake_version.patch

@@ -0,0 +1,18 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index dd3d8eb9..c0187747 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -1,11 +1,8 @@
+ # CMake build script for ZeroMQ
+ project(ZeroMQ)
+ 
+-if(${CMAKE_SYSTEM_NAME} STREQUAL Darwin)
+-  cmake_minimum_required(VERSION 3.0.2)
+-else()
+-  cmake_minimum_required(VERSION 2.8.12)
+-endif()
++cmake_minimum_required(VERSION 3.15)
++message(STATUS "Patched cmake version")
+ 
+ include(CheckIncludeFiles)
+ include(CheckCCompilerFlag)

psi-pmodules/DetectorSoftware/slsDetectorPackage/files/variants

@@ -12,5 +12,6 @@ slsDetectorPackage/8.0.1_rh8 stable cmake/3.15.5 Qt/5.12.10
 slsDetectorPackage/8.0.2_rh7 stable cmake/3.15.5 Qt/5.12.10
 slsDetectorPackage/8.0.2_rh8 stable cmake/3.15.5 Qt/5.12.10
 slsDetectorPackage/9.0.0_rh8 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/9.1.0_rh8 stable cmake/3.15.5 Qt/5.12.10
 
 

pyctbgui/pyctbgui/services/Pattern.py

@@ -10,6 +10,7 @@ from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as Navigatio
 from pyctbgui.utils.defines import Defines
 from pyctbgui.utils.plotPattern import PlotPattern
 
+from slsdet import DurationWrapper
 
 class PatternTab(QtWidgets.QWidget):
 
@@ -61,7 +62,10 @@ class PatternTab(QtWidgets.QWidget):
             getattr(self.view, f"lineEditLoop{i}Wait").editingFinished.connect(partial(self.setPatLoopWaitAddress, i))
             getattr(self.view,
                     f"spinBoxLoop{i}Repetition").editingFinished.connect(partial(self.setPatLoopRepetition, i))
-            getattr(self.view, f"spinBoxLoop{i}WaitTime").editingFinished.connect(partial(self.setPatLoopWaitTime, i))
+            getattr(self.view, f"doubleSpinBoxLoop{i}WaitClocks").editingFinished.connect(partial(self.setPatLoopWaitClocks, i))
+            getattr(self.view, f"spinBoxLoop{i}WaitInterval").editingFinished.connect(partial(self.setPatLoopWaitInterval, i))
+            getattr(self.view, f"comboBoxLoop{i}WaitInterval").currentIndexChanged.connect(partial(self.setPatLoopWaitInterval, i))
+        self.view.toolButtonTogglePageWaitTime.clicked.connect(self.setTogglePageWaitTime)
         self.view.pushButtonCompiler.clicked.connect(self.setCompiler)
         self.view.pushButtonUncompiled.clicked.connect(self.setUncompiledPatternFile)
         self.view.pushButtonPatternFile.clicked.connect(self.setPatternFile)
@@ -91,7 +95,8 @@ class PatternTab(QtWidgets.QWidget):
             self.getPatLoopStartStopAddress(i)
             self.getPatLoopWaitAddress(i)
             self.getPatLoopRepetition(i)
-            self.getPatLoopWaitTime(i)
+            self.getPatLoopWaitClocks(i)
+            self.getPatLoopWaitInterval(i)
 
     # Pattern Tab functions
 
@@ -182,17 +187,67 @@ class PatternTab(QtWidgets.QWidget):
         self.det.patnloop[level] = spinBox.value()
         self.getPatLoopRepetition(level)
 
-    def getPatLoopWaitTime(self, level):
+    def getPatLoopWaitClocks(self, level):
         retval = self.det.patwaittime[level]
-        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitTime")
+        spinBox = getattr(self.view, f"doubleSpinBoxLoop{level}WaitClocks")
         spinBox.editingFinished.disconnect()
         spinBox.setValue(retval)
-        spinBox.editingFinished.connect(partial(self.setPatLoopWaitTime, level))
+        spinBox.editingFinished.connect(partial(self.setPatLoopWaitClocks, level))
+
+    def setPatLoopWaitClocks(self, level):
+        spinBox = getattr(self.view, f"doubleSpinBoxLoop{level}WaitClocks")
+        self.det.patwaittime[level] = int(spinBox.value())
+        self.getPatLoopWaitClocks(level)
+
+    def getPatLoopWaitInterval(self, level):
+        retval = self.det.getPatternWaitInterval(level)[0].count()
+        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitInterval")
+        comboBox = getattr(self.view, f"comboBoxLoop{level}WaitInterval")
+        spinBox.editingFinished.disconnect()
+        comboBox.currentIndexChanged.disconnect()
+        # Converting to right time unit for period
+        if retval >= 1e9:
+            comboBox.setCurrentIndex(0)
+            spinBox.setValue(retval / 1e9)
+        elif retval >= 1e6:
+            comboBox.setCurrentIndex(1)
+            spinBox.setValue(retval / 1e6)
+        elif retval >= 1e3:
+            comboBox.setCurrentIndex(2)
+            spinBox.setValue(retval / 1e3)
+        else:
+            comboBox.setCurrentIndex(3)
+            spinBox.setValue(retval)
+        spinBox.editingFinished.connect(partial(self.setPatLoopWaitInterval, level))
+        comboBox.currentIndexChanged.connect(partial(self.setPatLoopWaitInterval, level))
+
+    def setPatLoopWaitInterval(self, level):
+        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitInterval")
+        comboBox = getattr(self.view, f"comboBoxLoop{level}WaitInterval")
+        value = spinBox.value()
+        if comboBox.currentIndex() == 0:
+            value *= 1e9
+        elif comboBox.currentIndex() == 1:
+            value *= 1e6
+        elif  comboBox.currentIndex() == 2:
+            value *= 1e3
+        t = DurationWrapper()
+        t.set_count(int(value))
+        self.det.patwaittime[level] =  t    
+        self.getPatLoopWaitInterval(level)
+
+    def setTogglePageWaitTime(self):
+        if self.view.stackedWidgetWaitTime.currentIndex() == 0:
+            self.view.stackedWidgetWaitTime.setCurrentIndex(1)
+            self.view.labelWaitTime.setText("Time")
+            for i in range(Defines.pattern.loops_count):
+                self.getPatLoopWaitInterval(i)
+        else:
+            self.view.stackedWidgetWaitTime.setCurrentIndex(0)
+            self.view.labelWaitTime.setText("Clocks")
+            for i in range(Defines.pattern.loops_count):
+                self.getPatLoopWaitClocks(i)
 
-    def setPatLoopWaitTime(self, level):
-        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitTime")
-        self.det.patwaittime[level] = spinBox.value()
-        self.getPatLoopWaitTime(level)
 
     def setCompiler(self):
         response = QtWidgets.QFileDialog.getOpenFileName(
@@ -450,7 +505,7 @@ class PatternTab(QtWidgets.QWidget):
                             f"{getattr(self.view, f'lineEditLoop{i}Stop').text()}")
 
             commands.append(f"patwait {i} {getattr(self.view, f'lineEditLoop{i}Wait').text()}")
-            commands.append(f"patwaittime {i} {getattr(self.view, f'spinBoxLoop{i}WaitTime').text()}")
+            commands.append(f"patwaittime {i} {getattr(self.view, f'doubleSpinBoxLoop{i}WaitClocks').text()}")
         commands.append(f"patlimits {self.view.lineEditStartAddress.text()}, {self.view.lineEditStopAddress.text()}")
         # commands.append(f"patfname {self.view.lineEditPatternFile.text()}")
         return commands

pyctbgui/pyctbgui/services/Signals.py

@@ -22,6 +22,7 @@ class SignalsTab(QtWidgets.QWidget):
         self.plotTab = None
         self.legend: LegendItem | None = None
         self.rx_dbitoffset = None
+        self.rx_dbitreorder = None
         self.rx_dbitlist = None
 
     def refresh(self):
@@ -29,6 +30,7 @@ class SignalsTab(QtWidgets.QWidget):
         self.updateDigitalBitEnable()
         self.updateIOOut()
         self.getDBitOffset()
+        self.getDBitReorder()
 
     def connect_ui(self):
         for i in range(Defines.signals.count):
@@ -49,6 +51,7 @@ class SignalsTab(QtWidgets.QWidget):
             partial(self.setIOOutRange, Defines.signals.half, Defines.signals.count))
         self.view.lineEditPatIOCtrl.editingFinished.connect(self.setIOOutReg)
         self.view.spinBoxDBitOffset.editingFinished.connect(self.setDbitOffset)
+        self.view.checkBoxDBitReorder.stateChanged.connect(self.setDbitReorder)
 
     def setup_ui(self):
         self.plotTab = self.mainWindow.plotTab
@@ -87,60 +90,79 @@ class SignalsTab(QtWidgets.QWidget):
                 self.legend.addItem(plot, name)
 
     @recordOrApplyPedestal
-    def _processWaveformData(self, data, aSamples, dSamples, rx_dbitlist, isPlottedArray, rx_dbitoffset, romode,
+    def _processWaveformData(self, data, aSamples, dSamples, rx_dbitreorder, rx_dbitlist, isPlottedArray, romode,
                              nADCEnabled):
-        """
-        transform raw waveform data into a processed numpy array
-        @param data:  raw waveform data
-        """
-        dbitoffset = rx_dbitoffset
+        
+        #transform raw waveform data into a processed numpy array
+        #@param data:  raw waveform data
+    
+        start_digital_data = 0 
         if romode == 2:
-            dbitoffset += nADCEnabled * 2 * aSamples
-        digital_array = np.array(np.frombuffer(data, offset=dbitoffset, dtype=np.uint8))
-        nbitsPerDBit = dSamples
-        if nbitsPerDBit % 8 != 0:
-            nbitsPerDBit += (8 - (dSamples % 8))
-        offset = 0
-        arr = []
-        for i in rx_dbitlist:
-            # where numbits * numsamples is not a multiple of 8
-            if offset % 8 != 0:
-                offset += (8 - (offset % 8))
-            if not isPlottedArray[i]:
-                offset += nbitsPerDBit
-                return None
-            waveform = np.zeros(dSamples)
-            for iSample in range(dSamples):
-                # all samples for digital bit together from slsReceiver
-                index = int(offset / 8)
-                iBit = offset % 8
-                bit = (digital_array[index] >> iBit) & 1
-                waveform[iSample] = bit
-                offset += 1
-            arr.append(waveform)
+            start_digital_data += nADCEnabled * 2 * aSamples
+        digital_array = np.array(np.frombuffer(data, offset=start_digital_data, dtype=np.uint8)) 
+        if rx_dbitreorder:
+            samples_per_bit = np.empty((len(rx_dbitlist), dSamples), dtype=np.uint8) #stored per row all the corresponding signals of all samples 
+            nbitsPerDBit = dSamples
+            if nbitsPerDBit % 8 != 0:
+                nbitsPerDBit += (8 - (dSamples % 8))
+            bit_index = 0
+            for idx, i in enumerate(rx_dbitlist):
+                # where numbits * numsamples is not a multiple of 8
+                if bit_index % 8 != 0:
+                    bit_index += (8 - (bit_index % 8))
+                if not isPlottedArray[i]:
+                    bit_index += nbitsPerDBit
+                    samples_per_bit[idx, :] = np.nan
+                    continue
+                for iSample in range(dSamples):
+                    # all samples for digital bit together from slsReceiver
+                    index = int(bit_index / 8)
+                    iBit = bit_index % 8
+                    bit = (digital_array[index] >> iBit) & 1
+                    samples_per_bit[idx,iSample] = bit
+                    bit_index += 1
+            return samples_per_bit
+        else: 
+            nbitsPerSample = len(rx_dbitlist) if len(rx_dbitlist) % 8 == 0 else len(rx_dbitlist) + (8 - (len(rx_dbitlist) % 8))
+            bits_per_sample = np.empty((dSamples, len(rx_dbitlist)), dtype=np.uint8) #store per row all selected bits of a sample
+            for iSample in range(dSamples): 
+                bit_index = nbitsPerSample * iSample
+                for idx, i in enumerate(rx_dbitlist): 
+                    if not isPlottedArray[i]:
+                        bit_index += 1
+                        bits_per_sample[iSample, idx] = np.nan
 
-        return np.array(arr)
+                    index = int(bit_index/8)
+                    iBit = idx % 8
+                    bit = (digital_array[index] >> iBit) & 1
+                    bits_per_sample[iSample, idx] = bit
+                    bit_index += 1
+            return bits_per_sample.T.copy() 
 
+
+                
     def processWaveformData(self, data, aSamples, dSamples):
-        """
-        view function
-        plots processed waveform data
-        data: raw waveform data
-        dsamples: digital samples
-        asamples: analog samples
-        """
+        
+        #view function
+        #plots processed waveform data
+        #data: raw waveform data
+        #dsamples: digital samples
+        #asamples: analog samples
+
+        self.refresh()
+        
         waveforms = {}
         isPlottedArray = {i: getattr(self.view, f"checkBoxBIT{i}Plot").isChecked() for i in self.rx_dbitlist}
 
-        digital_array = self._processWaveformData(data, aSamples, dSamples, self.rx_dbitlist, isPlottedArray,
-                                                  self.rx_dbitoffset, self.mainWindow.romode.value,
+        digital_array = self._processWaveformData(data, aSamples, dSamples, self.rx_dbitreorder, self.rx_dbitlist, isPlottedArray,
+                                                  self.mainWindow.romode.value,
                                                   self.mainWindow.nADCEnabled)
 
         irow = 0
-        for idx, i in enumerate(self.rx_dbitlist):
+        for idx, i in enumerate(self.rx_dbitlist): 
             # bits enabled but not plotting
-            waveform = digital_array[idx]
-            if waveform is None:
+            waveform = digital_array[idx, :]
+            if np.isnan(waveform[0]):
                 continue
             self.mainWindow.digitalPlots[i].setData(waveform)
             plotName = getattr(self.view, f"labelBIT{i}").text()
@@ -151,8 +173,10 @@ class SignalsTab(QtWidgets.QWidget):
                 irow += 1
             else:
                 self.mainWindow.digitalPlots[i].setY(0)
+            
         return waveforms
 
+
     def initializeAllDigitalPlots(self):
         self.mainWindow.plotDigitalWaveform = pg.plot()
         self.mainWindow.plotDigitalWaveform.addLegend(colCount=Defines.colCount)
@@ -360,14 +384,25 @@ class SignalsTab(QtWidgets.QWidget):
         self.view.spinBoxDBitOffset.setValue(self.rx_dbitoffset)
         self.view.spinBoxDBitOffset.editingFinished.connect(self.setDbitOffset)
 
+    def getDBitReorder(self):
+        self.view.checkBoxDBitReorder.stateChanged.disconnect()
+        self.rx_dbitreorder = self.det.rx_dbitreorder
+        self.view.checkBoxDBitReorder.setChecked(self.rx_dbitreorder)
+        self.view.checkBoxDBitReorder.stateChanged.connect(self.setDbitReorder)
+
+
     def setDbitOffset(self):
         self.det.rx_dbitoffset = self.view.spinBoxDBitOffset.value()
 
+    def setDbitReorder(self):
+        self.det.rx_dbitreorder = self.view.checkBoxDBitReorder.isChecked()
+
     def saveParameters(self) -> list:
         commands = []
         dblist = [str(i) for i in range(Defines.signals.count) if getattr(self.view, f"checkBoxBIT{i}DB").isChecked()]
         if len(dblist) > 0:
             commands.append(f"rx_dbitlist {', '.join(dblist)}")
         commands.append(f"rx_dbitoffset {self.view.spinBoxDBitOffset.value()}")
+        commands.append(f"rx_dbitreorder {self.view.checkBoxDBitReorder.isChecked()}")
         commands.append(f"patioctrl {self.view.lineEditPatIOCtrl.text()}")
         return commands

pyctbgui/pyctbgui/ui/signals.ui

@@ -6074,6 +6074,33 @@
        <enum>QFrame::Raised</enum>
       </property>
       <layout class="QGridLayout" name="gridLayout_17">
+       <item row="0" column="4">
+        <widget class="QSpinBox" name="spinBoxDBitOffset">
+         <property name="minimumSize">
+          <size>
+           <width>150</width>
+           <height>32</height>
+          </size>
+         </property>
+         <property name="maximumSize">
+          <size>
+           <width>150</width>
+           <height>32</height>
+          </size>
+         </property>
+         <property name="font">
+          <font>
+           <pointsize>10</pointsize>
+          </font>
+         </property>
+         <property name="styleSheet">
+          <string notr="true">background-color: rgb(255, 255, 255);</string>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+         </property>
+        </widget>
+       </item>
        <item row="0" column="3">
         <widget class="QLabel" name="label_66">
          <property name="font">
@@ -6086,6 +6113,36 @@
          </property>
         </widget>
        </item>
+       <item row="0" column="6">
+        <widget class="QCheckBox" name="checkBoxDBitReorder">
+         <property name="font">
+          <font>
+           <pointsize>10</pointsize>
+          </font>
+         </property>
+         <property name="text">
+          <string>DBit Reorder</string>
+         </property>
+        </widget>
+       </item>
+       <item row="0" column="0">
+        <widget class="QLabel" name="label_48">
+         <property name="minimumSize">
+          <size>
+           <width>50</width>
+           <height>0</height>
+          </size>
+         </property>
+         <property name="font">
+          <font>
+           <pointsize>10</pointsize>
+          </font>
+         </property>
+         <property name="text">
+          <string>IO Control Register:</string>
+         </property>
+        </widget>
+       </item>
        <item row="0" column="1">
         <widget class="QLineEdit" name="lineEditPatIOCtrl">
          <property name="sizePolicy">
@@ -6133,50 +6190,18 @@
          </property>
         </spacer>
        </item>
-       <item row="0" column="4">
-        <widget class="QSpinBox" name="spinBoxDBitOffset">
-         <property name="minimumSize">
+       <item row="0" column="5">
+        <spacer name="horizontalSpacer_22">
+         <property name="orientation">
+          <enum>Qt::Horizontal</enum>
+         </property>
+         <property name="sizeHint" stdset="0">
           <size>
-           <width>150</width>
-           <height>32</height>
+           <width>40</width>
+           <height>20</height>
           </size>
          </property>
-         <property name="maximumSize">
-          <size>
-           <width>150</width>
-           <height>32</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="styleSheet">
-          <string notr="true">background-color: rgb(255, 255, 255);</string>
-         </property>
-         <property name="alignment">
-          <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
-         </property>
-        </widget>
-       </item>
-       <item row="0" column="0">
-        <widget class="QLabel" name="label_48">
-         <property name="minimumSize">
-          <size>
-           <width>50</width>
-           <height>0</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="text">
-          <string>IO Control Register:</string>
-         </property>
-        </widget>
+        </spacer>
        </item>
       </layout>
      </widget>

pyproject.toml

@@ -0,0 +1,33 @@
+[tool.scikit-build.metadata.version]
+provider = "scikit_build_core.metadata.regex"
+input = "VERSION"
+regex = '^(?P<version>\d+(?:\.\d+)*(?:[\.\+\w]+)?)$'
+result = "{version}" 
+
+[build-system]
+requires = [ "scikit-build-core>=0.10", "pybind11", "numpy",]
+build-backend = "scikit_build_core.build"
+
+[project]
+name = "slsdet"
+dynamic = ["version"]
+
+[tool.cibuildwheel]
+before-all = "uname -a"
+
+[tool.scikit-build.build]
+verbose = true
+
+[tool.scikit-build.cmake]
+build-type = "Release"
+
+[tool.scikit-build.install]
+components = [ "python",]
+
+[tool.scikit-build.cmake.define]
+SLS_USE_RECEIVER = "OFF"
+SLS_USE_RECEIVER_BINARIES = "OFF"
+SLS_USE_TEXTCLIENT = "OFF"
+SLS_BUILD_SHARED_LIBRARIES = "OFF"
+SLS_USE_PYTHON = "ON"
+SLS_INSTALL_PYTHONEXT = "ON"

python/CMakeLists.txt

@@ -20,13 +20,14 @@ target_link_libraries(_slsdet PUBLIC
 
 
 set_target_properties(_slsdet PROPERTIES
-                        LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+                        LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin/slsdet
                     )
 
 #Copy Python code 
 set( PYTHON_FILES
     slsdet/__init__.py
     slsdet/adcs.py
+    slsdet/bits.py
     slsdet/dacs.py
     slsdet/powers.py
     slsdet/decorators.py
@@ -37,8 +38,8 @@ set( PYTHON_FILES
     slsdet/enums.py
     slsdet/errors.py
     slsdet/gaincaps.py
-    slsdet/gotthard.py
     slsdet/pattern.py
+    slsdet/PatternGenerator.py
     slsdet/gotthard2.py
     slsdet/moench.py
     slsdet/proxy.py
@@ -71,9 +72,18 @@ configure_file( ${CMAKE_CURRENT_SOURCE_DIR}/../VERSION
 if(SLS_INSTALL_PYTHONEXT)
     install(TARGETS _slsdet
         EXPORT "${TARGETS_EXPORT_NAME}"
-        LIBRARY DESTINATION ${CMAKE_INSTALL_PREFIX}/python
+        LIBRARY DESTINATION slsdet
+        COMPONENT python
     )
+    install(
+        FILES ${PYTHON_FILES} 
+        DESTINATION slsdet
+        COMPONENT python
+        )
+    install(
+        FILES ../VERSION 
+        DESTINATION slsdet
+        COMPONENT python
+        )
 
-    install(FILES ${PYTHON_FILES} DESTINATION ${CMAKE_INSTALL_PREFIX}/python/slsdet)
-    install(FILES ../VERSION DESTINATION ${CMAKE_INSTALL_PREFIX}/python/slsdet)
 endif()

python/scripts/compile_servers.py

@@ -55,7 +55,6 @@ servers = [
 #     "jungfrauDetectorServer",
       "mythen3DetectorServer",
 #     "gotthard2DetectorServer",
-#     "gotthardDetectorServer",
 #     "ctbDetectorServer",
 #     "moenchDetectorServer",
 ]

python/scripts/frameSynchronizerPullSocket.py

@@ -0,0 +1,19 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
+# Script to get combined zmq packets from frame synchronizer using pull zmq sockets
+import json
+import zmq
+
+c = zmq.Context()
+s = c.socket(zmq.PULL)
+s.connect("tcp://127.0.0.1:5555")
+
+while True:
+     m = s.recv_multipart()
+     for p in m:
+         if p.startswith(b"{"):
+             print(p.decode().strip())
+         else:
+             print("binary")
+     print("--------")
+

python/scripts/generate_functions.py

@@ -123,6 +123,9 @@ def visit(node):
     if node.kind == cindex.CursorKind.CLASS_DECL:
         if node.displayname == "Detector":
             for child in node.get_children():
+                # Skip assignment operators
+                if child.kind == cindex.CursorKind.CXX_METHOD and child.spelling == "operator=":
+                    continue
                 if (
                     child.kind == cindex.CursorKind.CXX_METHOD
                     and child.access_specifier == cindex.AccessSpecifier.PUBLIC

python/setup.py

@@ -1,77 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-"""
-Setup file for slsdet
-Build upon the pybind11 example found here: https://github.com/pybind/python_example
-"""
-
-import os
-import sys
-from setuptools import setup, find_packages
-from pybind11.setup_helpers import Pybind11Extension, build_ext
-
-def read_version():
-    try:
-        version_file = os.path.join(os.path.dirname(__file__), 'slsdet', 'VERSION')
-        with open(version_file, "r") as f:
-            return f.read().strip()
-    except:
-        raise RuntimeError("VERSION file not found in slsdet package from setup.py.")
-
-__version__ = read_version()
-
-
-def get_conda_path():
-    """
-    Keep this a function if we need some fancier logic later
-    """
-    print('Prefix: ', os.environ['CONDA_PREFIX'])
-    return os.environ['CONDA_PREFIX']
-
-
-#TODO migrate to CMake build or fetch files from cmake? 
-ext_modules = [
-    Pybind11Extension(
-        '_slsdet',
-        ['src/main.cpp',
-        'src/enums.cpp',
-        'src/current.cpp',
-        'src/detector.cpp',
-        'src/network.cpp',
-        'src/pattern.cpp',
-        'src/scan.cpp',
-        'src/duration.cpp',
-        'src/DurationWrapper.cpp',
-        'src/pedestal.cpp',
-        ]
-        
-        
-        ,
-        include_dirs=[
-            os.path.join(get_conda_path(), 'include'),
-
-        ],
-        libraries=['SlsDetector', 'SlsSupport', 'SlsReceiver'],
-        library_dirs=[
-            os.path.join(get_conda_path(), 'lib'),
-        ],
-        language='c++'
-    ),
-]
-
-setup(
-    name='slsdet',
-    version=__version__,
-    author='Erik Frojdh',
-    author_email='erik.frojdh@psi.ch',
-    url='https://github.com/slsdetectorgroup/slsDetectorPackage',
-    description='Detector API for SLS Detector Group detectors',
-    long_description='',
-    packages=find_packages(exclude=['contrib', 'docs', 'tests']),
-    package_data={
-        'slsdet': ['VERSION'], 
-    },  
-    ext_modules=ext_modules,
-    cmdclass={"build_ext": build_ext},
-    zip_safe=False,
-)

python/slsdet/PatternGenerator.py

@@ -0,0 +1,226 @@
+from . import Detector, Pattern
+from .bits import setbit, clearbit
+import textwrap
+from pathlib import Path
+
+
+class PatternGenerator:
+    """
+    Class to generate a pattern for the SLS detector. Intents to as closely as possible 
+    mimic the old pattern generation in the C code.
+    """
+    def __init__(self):
+        self.pattern = Pattern()
+        self.iaddr = 0
+
+    def SB(self, *bits):
+        """
+        Set one or several bits. Change will take affect with the next PW.
+        """
+        for bit in bits:
+            self.pattern.word[self.iaddr] = setbit(bit, self.pattern.word[self.iaddr])
+        return self.pattern.word[self.iaddr]
+ 
+    def CB(self, *bits):
+        """
+        Clear one or several bits. Change will take affect with the next PW.
+        """
+        for bit in bits:
+            self.pattern.word[self.iaddr] = clearbit(bit, self.pattern.word[self.iaddr])
+        return self.pattern.word[self.iaddr]
+    
+
+    def _pw(self, verbose = False):
+        if verbose:
+            print(f'{self.iaddr:#06x} {self.pattern.word[self.iaddr]:#018x}') 
+        
+        #Limits are inclusive so we need to increment the address before writing the next word
+        self.pattern.limits[1] = self.iaddr
+        self.iaddr += 1
+        self.pattern.word[self.iaddr] = self.pattern.word[self.iaddr-1]
+
+    def PW(self, x = 1, verbose = False):
+        for i in range(x):
+            self._pw(verbose)
+            
+    # def REPEAT(self, x, verbose = False):
+    #     for i in range(x):
+    #         self._pw(verbose)
+
+    # def PW2(self, verbose = 0):
+    #     self.REPEAT(2, verbose)
+
+
+    def CLOCKS(self, bit, times = 1, length = 1, verbose = False):
+        """
+        clocks "bit" n "times", every half clock is long "length"
+        length is optional, default value is 1
+        """
+        for i in range(0, times):
+            self.SB(bit); self.PW(length, verbose)
+            self.CB(bit); self.PW(length, verbose)
+
+    def CLOCK(self, bit, length = 1, verbose = 0):
+        self.CLOCKS(bit, 1, length ,verbose)
+
+    def serializer(self, value, serInBit, clkBit, nbits, msbfirst = True, length = 1):
+        """serializer(value,serInBit,clkBit,nbits,msbfirst=1,length=1)
+        Produces the .pat file needed to serialize a word into a shift register.
+        value: value to be serialized
+        serInBit: control bit corresponding to serial in 
+        clkBit: control bit corresponding to the clock 
+        nbits: number of bits of the target register to load
+        msbfirst: if 1 pushes in the MSB first (default), 
+        if 0 pushes in the LSB first
+        length: length of all the PWs in the pattern
+        It produces no output because it modifies directly the members of the class pat via SB and CB"""
+        
+        c = value
+        self.CB(serInBit, clkBit)
+        self.PW(length) #generate initial line with clk and serIn to 0
+        
+        start = 0
+        stop = nbits
+        step = 1
+
+        if msbfirst:
+            start = nbits - 1
+            stop = -1
+            step =- 1 #reverts loop if msb has to be pushed in first
+
+        for i in range(start, stop, step):
+            if c & (1<<i): 
+                self.SB(serInBit)
+                self.PW(length)
+            else:
+                self.CB(serInBit)
+                self.PW(length)
+            self.SB(clkBit)
+            self.PW(length)
+            self.CB(clkBit)
+            self.PW(length)
+
+        self.CB(serInBit, clkBit)
+        self.PW(length) #generate final line with clk and serIn to 0   
+
+
+    #NOT IMPLEMENTED YET
+    #TODO! What should setstop do? Or can we remove it? 
+    #def setstop():    
+    #
+
+    def setoutput(self, bit):
+       self.pattern.ioctrl = setbit(bit, self.pattern.ioctrl)
+    
+    def setinput(self, bit):
+       self.pattern.ioctrl= clearbit(bit, self.pattern.ioctrl)
+    
+    #TODO! What should setclk do? Or can we remove it?
+    # def setclk(bit):
+    #    self.clkctrl=self.setbit(bit,self.clkctrl)
+
+    def setinputs(self, *args):
+       for i in args:
+          self.setinput(i)
+
+    def setoutputs(self, *args):
+      for i in args:
+         self.setoutput(i)
+        
+    #def setclks(self, *args):
+    #    for i in args:
+    #        self.setclk(i)
+
+    def setnloop(self, i, reps):
+        self.pattern.nloop[i] = reps
+
+    def setstartloop(self, i):
+        """
+        Set startloop[i] to the current address.
+        """
+        self.pattern.startloop[i] = self.iaddr
+
+    def setstoploop(self, i):
+        """
+        Set stoploop[i] to the current address.
+        """
+        self.pattern.stoploop[i] = self.iaddr
+        
+
+    def setstart(self):
+        """
+        Set start of pattern to the current address.
+        """
+        self.pattern.limits[0]=self.iaddr
+
+
+    def setstop(self,l):
+        """
+        Set stop of pattern to the current address.
+        """
+        self.pattern.limits[1] = self.iaddr
+
+        
+    def setwaitpoint(self, i):
+        """
+        Set wait[i] to the current address.
+        """
+        self.pattern.wait[i] = self.iaddr
+
+
+    def setwaittime(self, i, t):
+        """
+        Set waittime[i] to t.
+        """
+        self.pattern.waittime[i] = t
+
+
+    def setwait(self, i, t):
+        """
+        Set wait[i] to the current address and waittime[i] to t.
+        """
+        self.setwait(i)
+        self.setwaittime(i, t)
+
+    
+    def __repr__(self):
+        return textwrap.dedent(f"""\
+                            PatternBuilder:
+                                patlimits: {self.pattern.limits}
+                                startloop: {self.pattern.startloop}
+                                stoploop: {self.pattern.stoploop}
+                                nloop: {self.pattern.nloop}
+                                wait: {self.pattern.wait}
+                                waittime: {self.pattern.waittime}""")
+
+    def __str__(self):
+        return self.pattern.str()
+    
+    def print(self):
+        print(self)
+
+    def save(self, fname):
+        """Save pattern to text file"""
+        fname = str(fname) #Accept also Path objects, but C++ code needs a string
+        self.pattern.save(fname)
+
+    def load(self, fname):
+        """Load pattern from text file"""
+        fname = str(fname) #Accept also Path objects, but C++ code needs a string
+        n = self.pattern.load(fname)
+
+        #If the firs and only word is 0 we assume an empty pattern
+        if n == 1 and self.pattern.word[0] == 0:
+            n = 0
+        self.iaddr = n
+
+        #To make PW work as expected we need to set 1+last word to the last word
+        if n > 0:
+            self.pattern.word[n] = self.pattern.word[n-1]
+
+        
+    def send_to_detector(self, det):
+        """
+        Load the pattern into the detector.
+        """
+        det.setPattern(self.pattern)

python/slsdet/__init__.py

@@ -9,12 +9,12 @@ from .detector import Detector
 from .jungfrau import Jungfrau
 from .mythen3 import Mythen3
 from .gotthard2 import Gotthard2
-from .gotthard import Gotthard
 from .moench import Moench
 from .pattern import Pattern, patternParameters
 from .gaincaps import Mythen3GainCapsWrapper
+from .PatternGenerator import PatternGenerator
 
-import _slsdet
+from . import _slsdet
 xy = _slsdet.xy
 defs = _slsdet.slsDetectorDefs
 
@@ -41,3 +41,6 @@ def read_version():
     
 __version__ = read_version()
 
+
+
+

python/slsdet/bits.py

@@ -0,0 +1,31 @@
+import numpy as np
+
+
+def setbit(bit, word):
+    if isinstance(word, np.generic):
+        mask = word.dtype.type(1)
+        mask = mask << bit
+    else:
+        mask = 1 << bit
+    return word | mask
+
+
+def setbit_arr(bit, arr):
+    arr |= arr.dtype.type(1 << bit)
+
+
+def clearbit(bit, word):
+    """
+    Clear the bit at position bit in word.
+    Two paths to avoid converting the types.  
+    """
+    if isinstance(word, np.generic):
+        mask = word.dtype.type(1)
+        mask = ~(mask << bit)
+    else:
+        mask = ~(1 << bit)
+    return word & mask
+
+
+def clearbit_arr(bit, arr):
+    arr &= arr.dtype.type(~(1 << bit))

python/slsdet/ctb.py

@@ -4,7 +4,7 @@ from .detector import Detector, freeze
 from .utils import element_if_equal
 from .dacs import DetectorDacs, NamedDacs
 from .powers import DetectorPowers, NamedPowers
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 

python/slsdet/dacs.py

@@ -3,7 +3,7 @@
 from .detector_property import DetectorProperty
 from functools import partial
 import numpy as np
-import _slsdet
+from . import _slsdet
 from .detector import freeze
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 class Dac(DetectorProperty):

python/slsdet/detector.py

@@ -1,8 +1,8 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-from _slsdet import CppDetectorApi
-from _slsdet import slsDetectorDefs
-from _slsdet import IpAddr, MacAddr
+from ._slsdet import CppDetectorApi
+from ._slsdet import slsDetectorDefs
+from ._slsdet import IpAddr, MacAddr
 
 runStatus = slsDetectorDefs.runStatus
 timingMode = slsDetectorDefs.timingMode
@@ -15,7 +15,7 @@ defs = slsDetectorDefs
 
 from .utils import element_if_equal, all_equal, get_set_bits, list_to_bitmask
 from .utils import Geometry, to_geo, element, reduce_time, is_iterable, hostname_list
-from _slsdet import xy
+from ._slsdet import xy
 from .gaincaps import Mythen3GainCapsWrapper
 from . import utils as ut
 from .proxy import JsonProxy, SlowAdcProxy, ClkDivProxy, MaxPhaseProxy, ClkFreqProxy, PatLoopProxy, PatNLoopProxy, PatWaitProxy, PatWaitTimeProxy 
@@ -151,6 +151,10 @@ class Detector(CppDetectorApi):
     def hostname(self):
         """Frees shared memory and sets hostname (or IP address) of all modules concatenated by + 
         Virtual servers can already use the port in hostname separated by ':' and ports incremented by 2 to accomodate the stop server as well.
+
+        Note
+        -----
+        The row and column values in the udp/zmq header are affected by the order in this command and the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on. This only affects row and column in udp/zmq header.
         
         Example
         -------
@@ -270,7 +274,7 @@ class Detector(CppDetectorApi):
     @property
     @element
     def serialnumber(self):
-        """Jungfrau][Gotthard][Mythen3][Gotthard2][CTB][Moench] Serial number of detector """
+        """Jungfrau][Mythen3][Gotthard2][CTB][Moench] Serial number of detector """
         return ut.lhex(self.getSerialNumber())
 
     @property
@@ -308,7 +312,7 @@ class Detector(CppDetectorApi):
         -----
         [Eiger] Options: 4, 8, 12, 16, 32. If set to 32, also sets clkdivider to 2 (quarter speed), else to 0 (full speed)\n
         [Mythen3] Options: 8, 16, 32 \n
-        [Jungfrau][Moench][Gotthard][Ctb][Mythen3][Gotthard2][Xilinx Ctb] 16
+        [Jungfrau][Moench][Ctb][Mythen3][Gotthard2][Xilinx Ctb] 16
         """
         return self.getDynamicRange()
 
@@ -368,7 +372,6 @@ class Detector(CppDetectorApi):
         
         [Eiger] Use threshold command to load settings
         [Jungfrau] GAIN0, HIGHGAIN0 \n
-        [Gotthard] DYNAMICGAIN, HIGHGAIN, LOWGAIN, MEDIUMGAIN, VERYHIGHGAIN \n
         [Gotthard2] DYNAMICGAIN, FIXGAIN1, FIXGAIN2 \n
         [Eiger] settings loaded from file found in settingspath
         [Moench] G1_HIGHGAIN, G1_LOWGAIN, G2_HIGHCAP_HIGHGAIN, G2_HIGHCAP_LOWGAIN, G2_LOWCAP_HIGHGAIN, G2_LOWCAP_LOWGAIN, G4_HIGHGAIN, G4_LOWGAIN
@@ -400,7 +403,7 @@ class Detector(CppDetectorApi):
     @element
     def framesl(self):
         """
-        [Gotthard][Jungfrau][Moench][Mythen3][Gotthard2][CTB][Xilinx CTB] Number of frames left in acquisition.\n
+        [Jungfrau][Moench][Mythen3][Gotthard2][CTB][Xilinx CTB] Number of frames left in acquisition.\n
 
         Note
         ----
@@ -631,7 +634,7 @@ class Detector(CppDetectorApi):
     @element
     def periodl(self):
         """
-        [Gotthard][Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Period left for current frame.
+        [Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Period left for current frame.
 
         Note
         -----
@@ -653,7 +656,7 @@ class Detector(CppDetectorApi):
     @element
     def delay(self):
         """
-        [Gotthard][Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Delay after trigger, accepts either a value in seconds, DurationWrapper or datetime.timedelta
+        [Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Delay after trigger, accepts either a value in seconds, DurationWrapper or datetime.timedelta
 
         :getter: always returns in seconds. To get in DurationWrapper, use getDelayAfterTrigger
 
@@ -695,7 +698,7 @@ class Detector(CppDetectorApi):
     @element
     def delayl(self):
         """
-        [Gotthard][Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Delay left after trigger during acquisition, accepts either a value in seconds, datetime.timedelta or DurationWrapper
+        [Jungfrau][Moench][CTB][Mythen3][Gotthard2][Xilinx Ctb] Delay left after trigger during acquisition, accepts either a value in seconds, datetime.timedelta or DurationWrapper
 
         Note
         -----
@@ -1440,8 +1443,6 @@ class Detector(CppDetectorApi):
     @udp_srcip.setter
     def udp_srcip(self, ip):
         if ip == "auto":
-            if self.type == detectorType.GOTTHARD:
-                raise NotImplementedError('Auto for udp_srcip cannot be used for GotthardI')
             ip = socket.gethostbyname(self.hostname[0])        
         ip = ut.make_ip(ip)
         ut.set_using_dict(self.setSourceUDPIP, ip)
@@ -1522,7 +1523,6 @@ class Detector(CppDetectorApi):
 
         Note
         -----
-        [Gotthard] 0, 90, 110, 120, 150, 180, 200 \n
         [Eiger][Mythen3][Gotthard2] 0 - 200 \n
         [Jungfrau][Moench][Ctb] 0, 60 - 200
         """
@@ -1650,7 +1650,7 @@ class Detector(CppDetectorApi):
     def master(self):
         """
         [Eiger][Gotthard2][Jungfrau][Moench] Sets (half) module to master and other(s) to slaves.\n
-        [Gotthard][Gotthard2][Mythen3][Eiger][Jungfrau][Moench] Gets if the current (half) module is master.
+        [Gotthard2][Mythen3][Eiger][Jungfrau][Moench] Gets if the current (half) module is master.
         """
         return self.getMaster()
 
@@ -1908,7 +1908,7 @@ class Detector(CppDetectorApi):
 
     @property
     def adcreg(self):
-        """[Jungfrau][Moench][Ctb][Gotthard] Writes to an adc register 
+        """[Jungfrau][Moench][Ctb] Writes to an adc register 
 
         Note
         -----
@@ -1937,7 +1937,7 @@ class Detector(CppDetectorApi):
     @element
     def triggersl(self):
         """
-        [Gotthard][Jungfrau][Moench][Mythen3][Gotthard2][CTB][Xilinx CTB] Number of triggers left in acquisition.\n
+        [Jungfrau][Moench][Mythen3][Gotthard2][CTB][Xilinx CTB] Number of triggers left in acquisition.\n
         
         Note
         ----
@@ -2202,7 +2202,7 @@ class Detector(CppDetectorApi):
         Note
         -----
         Default: AUTO_TIMING \n
-        [Jungfrau][Moench][Gotthard][Ctb][Gotthard2][Xilinx Ctb] AUTO_TIMING, TRIGGER_EXPOSURE \n
+        [Jungfrau][Moench][Ctb][Gotthard2][Xilinx Ctb] AUTO_TIMING, TRIGGER_EXPOSURE \n
         [Mythen3] AUTO_TIMING, TRIGGER_EXPOSURE, GATED, TRIGGER_GATED \n
         [Eiger] AUTO_TIMING, TRIGGER_EXPOSURE, GATED, BURST_TRIGGER
         """
@@ -2259,7 +2259,7 @@ class Detector(CppDetectorApi):
     def type(self):
         """ Returns detector type. 
         Enum: detectorType
-        [EIGER, JUNGFRAU, GOTTHARD, MOENCH, MYTHEN3, GOTTHARD2, CHIPTESTBOARD]
+        [EIGER, JUNGFRAU, MOENCH, MYTHEN3, GOTTHARD2, CHIPTESTBOARD]
 
         :setter: Not implemented
         """
@@ -2566,7 +2566,7 @@ class Detector(CppDetectorApi):
 
         Note
         -----
-        By default, the on-chip gain switching is active during the entire exposure. This mode disables the on-chip gain switching comparator automatically after 93.75% of exposure time (only for longer than 100us). The % is only for chipv1.0, the duration can be set for chipv1.1.\n
+        By default, the on-chip gain switching is active during the entire exposure. This mode disables the on-chip gain switching comparator automatically and the duration is set using compdisabletime.\n
         Default is 0 or this mode disabled (comparator enabled throughout). 1 enables mode. 0 disables mode. 
         """
         return self.getAutoComparatorDisable()
@@ -2580,10 +2580,6 @@ class Detector(CppDetectorApi):
     def compdisabletime(self):
         """[Jungfrau] Time before end of exposure when comparator is disabled. 
 
-        Note
-        -----
-        It is only possible for chipv1.1.
-
         :getter: always returns in seconds. To get in DurationWrapper, use getComparatorDisableTime
 
         Example
@@ -2913,7 +2909,7 @@ class Detector(CppDetectorApi):
     @property
     @element
     def timing_info_decoder(self):
-        """[Jungfrau] [Jungfrau] Advanced Command and only for SWISSFEL and SHINE. Sets the bunch id or timing info decoder. Default is SWISSFEL.
+        """[Jungfrau] [Jungfrau] Advanced Command and only for SWISSFEL and SHINE. Sets the bunch id or timing info decoder. Default is SWISSFEL. Only allowed for pcbv2.0.
         Enum: timingInfoDecoder
         """
         return self.getTimingInfoDecoder()
@@ -3467,6 +3463,16 @@ class Detector(CppDetectorApi):
     def rx_dbitoffset(self, value):
         ut.set_using_dict(self.setRxDbitOffset, value)
 
+    @property
+    @element
+    def rx_dbitreorder(self):
+        """[Ctb] Reorder digital data to group together all samples per signal. Default is 1. Setting to 0 means 'do not reorder' and to keep what the board spits out, which is that all signals in a sample are grouped together."""
+        return self.getRxDbitReorder()
+
+    @rx_dbitreorder.setter
+    def rx_dbitreorder(self, value):
+        ut.set_using_dict(self.setRxDbitReorder, value)
+
     @property
     @element
     def maxadcphaseshift(self):
@@ -3479,15 +3485,13 @@ class Detector(CppDetectorApi):
     @property
     @element
     def adcphase(self):
-        """[Gotthard][Jungfrau][Moench][CTB] Sets phase shift of ADC clock. 
+        """[Jungfrau][Moench][CTB] Sets phase shift of ADC clock. 
 
         Note
         -----
         [Jungfrau][Moench] Absolute phase shift. Changing Speed also resets adcphase to recommended defaults.\n
-        [Ctb] Absolute phase shift. Changing adcclk also resets adcphase and sets it to previous values.\n
-        [Gotthard] Relative phase shift.
+        [Ctb] Absolute phase shift. Changing adcclk also resets adcphase and sets it to previous values.
 
-        :getter: Not implemented for Gotthard
         """
         return self.getADCPhase()
 
@@ -3702,7 +3706,13 @@ class Detector(CppDetectorApi):
     @property
     def patwaittime(self):
         """
-        [Ctb][Mythen3][Xilinx Ctb] Wait time in clock cycles of loop level provided.
+        [Ctb][Mythen3][Xilinx Ctb] Wait time in clock cycles of loop level provided. 
+
+        Info
+        ----
+
+        :getter: Always return in clock cycles. To get in DurationWrapper, use getPatternWaitInterval
+        :setter: Accepts either a value in clock cycles or a time unit (timedelta, DurationWrapper)
         
         Example
         -------
@@ -3713,41 +3723,85 @@ class Detector(CppDetectorApi):
         0: 5
         1: 20
         2: 30
+        >>> # using timedelta (up to microseconds precision)
+        >>> from datetime import timedelta
+        >>> d.patwaittime[0] = timedelta(seconds=1, microseconds=3)
+        >>> 
+        >>> # using DurationWrapper to set in seconds
+        >>> from slsdet import DurationWrapper
+        >>> d.patwaittime[0] = DurationWrapper(1.2)
+        >>> 
+        >>> # using DurationWrapper to set in ns
+        >>> t = DurationWrapper()
+        >>> t.set_count(500)
+        >>> d.patwaittime = t
+        >>>
+        >>> # to get in clock cycles
+        >>> d.patwaittime
+        1000
+        >>> 
+        >>> d.getPatternWaitInterval(0)
+        sls::DurationWrapper(total_seconds: 1.23 count: 1230000000)
         """
         return PatWaitTimeProxy(self)
 
-    @property
-    @element
-    def patwaittime0(self):
-        """[Ctb][Mythen3][Xilinx Ctb] Wait 0 time in clock cycles."""
-        return self.getPatternWaitTime(0)
 
-    @patwaittime0.setter
-    def patwaittime0(self, nclk):
-        nclk = ut.merge_args(0, nclk)
-        ut.set_using_dict(self.setPatternWaitTime, *nclk)
+    def create_patwaittime_property(level):
+        docstring_template ="""
+        Deprecated command. Use patwaittime instead.
+        [Ctb][Mythen3][Xilinx Ctb] Wait time in clock cycles of loop level {level} provided. 
 
-    @property
-    @element
-    def patwaittime1(self):
-        """[Ctb][Mythen3][Xilinx Ctb] Wait 1 time in clock cycles."""
-        return self.getPatternWaitTime(1)
+        Info
+        ----
 
-    @patwaittime1.setter
-    def patwaittime1(self, nclk):
-        nclk = ut.merge_args(1, nclk)
-        ut.set_using_dict(self.setPatternWaitTime, *nclk)
+        :getter: Always return in clock cycles. To get in DurationWrapper, use getPatternWaitInterval
+        :setter: Accepts either a value in clock cycles or a time unit (timedelta, DurationWrapper)
+        
+        Example
+        -------
+        >>> d.patwaittime{level} = 5
+        >>> d.patwaittime{level}
+        5
+        >>> # using timedelta (up to microseconds precision)
+        >>> from datetime import timedelta
+        >>> d.patwaittime{level} = timedelta(seconds=1, microseconds=3)
+        >>> 
+        >>> # using DurationWrapper to set in seconds
+        >>> from slsdet import DurationWrapper
+        >>> d.patwaittime{level} = DurationWrapper(1.2)
+        >>> 
+        >>> # using DurationWrapper to set in ns
+        >>> t = DurationWrapper()
+        >>> t.set_count(500)
+        >>> d.patwaittime{level} = t
+        >>>
+        >>> # to get in clock cycles
+        >>> d.patwaittime{level}
+        1000
+        >>> 
+        >>> d.getPatternWaitInterval(level)
+        sls::DurationWrapper(total_seconds: 1.23 count: 1230000000)
+        """
+        @property
+        @element
+        def patwaittime(self):
+            return self.getPatternWaitClocks(level)
 
-    @property
-    @element
-    def patwaittime2(self):
-        """[Ctb][Mythen3][Xilinx Ctb] Wait 2 time in clock cycles."""
-        return self.getPatternWaitTime(2)
+        @patwaittime.setter
+        def patwaittime(self, value):
+            if isinstance(value, (int, float)) and not isinstance(value, bool):
+                nclk = ut.merge_args(level, value)
+                ut.set_using_dict(self.setPatternWaitClocks, level, *nclk)
+            else:
+                ut.set_time_using_dict(self.setPatternWaitInterval, level, value)
+        
+        patwaittime.__doc__ = docstring_template.format(level=level)
 
-    @patwaittime2.setter
-    def patwaittime2(self, nclk):
-        nclk = ut.merge_args(2, nclk)
-        ut.set_using_dict(self.setPatternWaitTime, *nclk)
+        return patwaittime
+    
+    patwaittime0 = create_patwaittime_property(0)
+    patwaittime1 = create_patwaittime_property(1)
+    patwaittime2 = create_patwaittime_property(2)
 
 
     @property
@@ -4038,27 +4092,6 @@ class Detector(CppDetectorApi):
         return ClkDivProxy(self)
 
 
-    """
-    ---------------------------<<<Gotthard specific>>>---------------------------
-    """
-
-    @property
-    def exptimel(self):
-        """[Gotthard] Exposure time left for current frame.
-        
-        :getter: always returns in seconds. To get in DurationWrapper, use getExptimeLeft
-        :setter: Not Implemented
-        
-        Example
-        -----------
-        >>> d.exptimel
-        181.23
-        >>> d.getExptimeLeft()
-        [sls::DurationWrapper(total_seconds: 181.23 count: 181230000000)]
-        """
-        t = self.getExptimeLeft()
-        return reduce_time(t)
-
 
     """
     ---------------------------<<<Mythen3 specific>>>---------------------------

python/slsdet/eiger.py

@@ -11,7 +11,7 @@ Created on Wed Dec  6 11:51:18 2017
 from .detector import Detector
 from .temperature import Temperature, DetectorTemperature
 from .dacs import DetectorDacs
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 

python/slsdet/enums.py

@@ -15,8 +15,8 @@ if dt === detectorType.EIGER:
 """
 
 
-import _slsdet
+from . import _slsdet
 for name, cls in _slsdet.slsDetectorDefs.__dict__.items():
     if isinstance(cls, type):
-        exec(f'{name} = {cls.__module__}.{cls.__qualname__}')
+        exec(f'{name} = _slsdet.{cls.__qualname__}')
 

python/slsdet/gaincaps.py

@@ -1,6 +1,6 @@
 
 
-import _slsdet
+from . import _slsdet
 gc = _slsdet.slsDetectorDefs.M3_GainCaps
 
 

python/slsdet/gotthard.py

@@ -1,53 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-This file contains the specialization for the Moench detector
-"""
-
-
-from .detector import Detector, freeze
-from .dacs import DetectorDacs
-import _slsdet
-dacIndex = _slsdet.slsDetectorDefs.dacIndex
-from .detector_property import DetectorProperty
-
-# @freeze
-
-# vref_ds, vcascn_pb, vcascp_pb, vout_cm, vcasc_out, vin_cm, vref_comp, ib_test_c
-class GotthardDacs(DetectorDacs):
-    _dacs = [('vref_ds',     dacIndex.VREF_DS,    0, 4000,   660),
-             ('vcascn_pb',   dacIndex.VCASCN_PB,  0, 4000,   650),
-             ('vcascp_pb,',  dacIndex.VCASCP_PB,  0, 4000,  1480),
-             ('vout_cm',     dacIndex.VOUT_CM,    0, 4000,  1520),
-             ('vcasc_out',   dacIndex.VCASC_OUT,  0, 4000,  1320),
-             ('vin_cm',      dacIndex.VIN_CM,     0, 4000,  1350),
-             ('vref_comp',   dacIndex.VREF_COMP,  0, 4000,   350),
-             ('ib_test_c',   dacIndex.IB_TESTC,   0, 4000,   2001),
-            ]
-    _dacnames = [_d[0] for _d in _dacs]
-
-#vthreshold??
-
-
-@freeze
-class Gotthard(Detector):
-    """
-    Subclassing Detector to set up correct dacs and detector specific 
-    functions. 
-    """
-    _detector_dynamic_range = [16]
-
-
-    _settings = ['standard', 'highgain', 'lowgain', 'veryhighgain', 'verylowgain']
-    """available settings for Eiger, note almost always standard"""
-
-    def __init__(self, id=0):
-        super().__init__(id)
-        self._frozen = False 
-        self._dacs = GotthardDacs(self)
-    
-    @property
-    def dacs(self):
-        return self._dacs

python/slsdet/gotthard2.py

@@ -11,7 +11,7 @@ from .detector import Detector, freeze
 
 # from .adcs import Adc, DetectorAdcs
 from .dacs import DetectorDacs
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 

python/slsdet/jungfrau.py

@@ -11,7 +11,7 @@ from .detector import Detector, freeze
 
 # from .adcs import Adc, DetectorAdcs
 from .dacs import DetectorDacs
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 

python/slsdet/moench.py

@@ -9,7 +9,7 @@ This file contains the specialization for the Moench detector
 
 from .detector import Detector, freeze
 from .dacs import DetectorDacs
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 

python/slsdet/mythen3.py

@@ -11,7 +11,7 @@ from .detector import Detector, freeze
 
 # from .adcs import Adc, DetectorAdcs
 from .dacs import DetectorDacs
-import _slsdet
+from . import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 gc_enums = _slsdet.slsDetectorDefs.M3_GainCaps
 from .detector_property import DetectorProperty

python/slsdet/pattern.py

@@ -1,8 +1,8 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-import _slsdet
+from . import _slsdet
 
-from _slsdet import Pattern
+from ._slsdet import Pattern
 
 
 class patternParameters(_slsdet.patternParameters):

python/slsdet/powers.py

@@ -3,7 +3,7 @@
 from .detector_property import DetectorProperty
 from functools import partial
 import numpy as np
-import _slsdet
+from . import _slsdet
 from .detector import freeze
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 class Power(DetectorProperty):

python/slsdet/proxy.py

@@ -3,7 +3,7 @@
 from .utils import element_if_equal
 from .enums import dacIndex
 from .defines import M3_MAX_PATTERN_LEVELS, MAX_PATTERN_LEVELS
-from _slsdet import slsDetectorDefs
+from ._slsdet import slsDetectorDefs
 detectorType = slsDetectorDefs.detectorType
 
 
@@ -275,10 +275,13 @@ class PatWaitTimeProxy:
         self.det = det
 
     def __getitem__(self, key):
-        return element_if_equal(self.det.getPatternWaitTime(key))
+        return element_if_equal(self.det.getPatternWaitClocks(key))
 
     def __setitem__(self, key, value):
-        set_proxy_using_dict(self.det.setPatternWaitTime, key, value)
+        if isinstance(value, (int, float)) and not isinstance(value, bool):
+            set_proxy_using_dict(self.det.setPatternWaitClocks, key, value)
+        else:
+            set_proxy_using_dict(self.det.setPatternWaitInterval, key, value)
 
     def __repr__(self):
         max_levels = MAX_PATTERN_LEVELS

python/slsdet/utils.py

@@ -6,7 +6,7 @@ but not directly used in controlling the detector
 """
 
 from collections import namedtuple
-import _slsdet  #C++ lib
+from . import _slsdet  #C++ lib
 import functools
 import datetime as dt
 import pathlib

python/src/detector.cpp

@@ -1293,20 +1293,6 @@ void init_det(py::module &m) {
         (void (Detector::*)(defs::collectionMode, sls::Positions)) &
             Detector::setCollectionMode,
         py::arg(), py::arg() = Positions{});
-    CppDetectorApi.def("getROI",
-                       (Result<defs::ROI>(Detector::*)(sls::Positions) const) &
-                           Detector::getROI,
-                       py::arg() = Positions{});
-    CppDetectorApi.def("setROI",
-                       (void (Detector::*)(defs::ROI, int)) & Detector::setROI,
-                       py::arg(), py::arg());
-    CppDetectorApi.def(
-        "clearROI", (void (Detector::*)(sls::Positions)) & Detector::clearROI,
-        py::arg() = Positions{});
-    CppDetectorApi.def("getExptimeLeft",
-                       (Result<sls::ns>(Detector::*)(sls::Positions) const) &
-                           Detector::getExptimeLeft,
-                       py::arg() = Positions{});
     CppDetectorApi.def("getNumberOfBursts",
                        (Result<int64_t>(Detector::*)(sls::Positions) const) &
                            Detector::getNumberOfBursts,
@@ -1678,6 +1664,14 @@ void init_det(py::module &m) {
                        (void (Detector::*)(int, sls::Positions)) &
                            Detector::setRxDbitOffset,
                        py::arg(), py::arg() = Positions{});
+    CppDetectorApi.def("getRxDbitReorder",
+                       (Result<bool>(Detector::*)(sls::Positions) const) &
+                           Detector::getRxDbitReorder,
+                       py::arg() = Positions{});
+    CppDetectorApi.def("setRxDbitReorder",
+                       (void (Detector::*)(bool, sls::Positions)) &
+                           Detector::setRxDbitReorder,
+                       py::arg(), py::arg() = Positions{});
     CppDetectorApi.def("setDigitalIODelay",
                        (void (Detector::*)(uint64_t, int, sls::Positions)) &
                            Detector::setDigitalIODelay,
@@ -1861,13 +1855,22 @@ void init_det(py::module &m) {
                            Detector::setPatternWaitAddr,
                        py::arg(), py::arg(), py::arg() = Positions{});
     CppDetectorApi.def(
-        "getPatternWaitTime",
+        "getPatternWaitClocks",
         (Result<uint64_t>(Detector::*)(int, sls::Positions) const) &
-            Detector::getPatternWaitTime,
+            Detector::getPatternWaitClocks,
         py::arg(), py::arg() = Positions{});
-    CppDetectorApi.def("setPatternWaitTime",
+    CppDetectorApi.def("setPatternWaitClocks",
                        (void (Detector::*)(int, uint64_t, sls::Positions)) &
-                           Detector::setPatternWaitTime,
+                           Detector::setPatternWaitClocks,
+                       py::arg(), py::arg(), py::arg() = Positions{});
+    CppDetectorApi.def(
+        "getPatternWaitInterval",
+        (Result<sls::ns>(Detector::*)(int, sls::Positions) const) &
+            Detector::getPatternWaitInterval,
+        py::arg(), py::arg() = Positions{});
+    CppDetectorApi.def("setPatternWaitInterval",
+                       (void (Detector::*)(int, sls::ns, sls::Positions)) &
+                           Detector::setPatternWaitInterval,
                        py::arg(), py::arg(), py::arg() = Positions{});
     CppDetectorApi.def("getPatternMask",
                        (Result<uint64_t>(Detector::*)(sls::Positions)) &

python/src/duration.cpp

@@ -1,3 +1,4 @@
+#include <chrono>
 #include "py_headers.h"
 
 #include "DurationWrapper.h"
@@ -19,4 +20,25 @@ void init_duration(py::module &m) {
                << " count: " << self.count() << ")";
             return ss.str();
         });
+
+    m.def(
+        "test_return_DurationWrapper",
+        []() {
+            DurationWrapper t(1.3);
+            return t;
+        },
+        R"(
+          Test function to return a DurationWrapper object. Ensures that the automatic conversion in typecaster.h works.
+          )");
+
+    m.def(
+        "test_duration_to_ns",
+        [](const std::chrono::nanoseconds t) {
+            //Duration wrapper is used to be able to convert from time in python to chrono::nanoseconds
+            //return count to have something to test 
+            return t.count();
+        },
+        R"(
+          Test function convert DurationWrapper or number to chrono::ns. Ensures that the automatic conversion in typecaster.h works.
+          )"); // default value to test the default constructor
 }

python/src/enums.cpp

@@ -121,13 +121,9 @@ void init_enums(py::module &m) {
         .value("VTHRESHOLD", slsDetectorDefs::dacIndex::VTHRESHOLD)
         .value("IO_DELAY", slsDetectorDefs::dacIndex::IO_DELAY)
         .value("VREF_DS", slsDetectorDefs::dacIndex::VREF_DS)
-        .value("VCASCN_PB", slsDetectorDefs::dacIndex::VCASCN_PB)
-        .value("VCASCP_PB", slsDetectorDefs::dacIndex::VCASCP_PB)
         .value("VOUT_CM", slsDetectorDefs::dacIndex::VOUT_CM)
-        .value("VCASC_OUT", slsDetectorDefs::dacIndex::VCASC_OUT)
         .value("VIN_CM", slsDetectorDefs::dacIndex::VIN_CM)
         .value("VREF_COMP", slsDetectorDefs::dacIndex::VREF_COMP)
-        .value("IB_TESTC", slsDetectorDefs::dacIndex::IB_TESTC)
         .value("VB_COMP", slsDetectorDefs::dacIndex::VB_COMP)
         .value("VDD_PROT", slsDetectorDefs::dacIndex::VDD_PROT)
         .value("VIN_COM", slsDetectorDefs::dacIndex::VIN_COM)

python/src/pattern.cpp

@@ -20,8 +20,10 @@ void init_pattern(py::module &m) {
     });
 
     py::class_<sls::Pattern> Pattern(m, "Pattern");
-    Pattern.def(py::init());
-    Pattern.def("load", &sls::Pattern::load);
-    Pattern.def("data", (pat * (sls::Pattern::*)()) & sls::Pattern::data,
+    Pattern.def(py::init())
+    .def("load", &sls::Pattern::load)
+    .def("save", &sls::Pattern::save)
+    .def("str", &sls::Pattern::str)
+    .def("data", (pat * (sls::Pattern::*)()) & sls::Pattern::data,
                 py::return_value_policy::reference);
 }

python/src/typecaster.h

@@ -54,11 +54,16 @@ template <> struct type_caster<std::chrono::nanoseconds> {
                 value = duration_cast<nanoseconds>(duration<double>(PyFloat_AsDouble(src.ptr())));
                 return true;
             }
+            // If invoked with an int we assume it is nanoseconds and convert, same as in chrono.h
+            if (PyLong_Check(src.ptr())) {
+                value = duration_cast<nanoseconds>(duration<int64_t>(PyLong_AsLongLong(src.ptr())));
+                return true;
+            }
 
 
             // Lastly if we were actually called with a DurationWrapper object we get
             // the number of nanoseconds and create a std::chrono::nanoseconds from it
-            py::object py_cls = py::module::import("_slsdet").attr("DurationWrapper");
+            py::object py_cls = py::module::import("slsdet._slsdet").attr("DurationWrapper");
             if (py::isinstance(src, py_cls)){
                 sls::DurationWrapper *cls = src.cast<sls::DurationWrapper *>();
                 value = nanoseconds(cls->count());
@@ -77,7 +82,7 @@ template <> struct type_caster<std::chrono::nanoseconds> {
          * set the count from chrono::nanoseconds and return
          */
         static handle cast(std::chrono::nanoseconds src, return_value_policy /* policy */, handle /* parent */) {
-            py::object py_cls = py::module::import("_slsdet").attr("DurationWrapper");
+            py::object py_cls = py::module::import("slsdet._slsdet").attr("DurationWrapper");
             py::object* obj = new py::object;
             *obj = py_cls();
             sls::DurationWrapper *dur = obj->cast<sls::DurationWrapper *>();

python/tests/test_DurationWrapper.py

@@ -0,0 +1,58 @@
+import pytest
+
+from slsdet import DurationWrapper
+
+#import the compiled extension to use test functions for the automatic conversion
+from slsdet import _slsdet
+
+
+def test_default_construction_of_DurationWrapper():
+    """Test default construction of DurationWrapper"""
+    t = DurationWrapper()
+    assert t.count() == 0
+    assert t.total_seconds() == 0
+
+def test_construction_of_DurationWrapper():
+    """Test construction of DurationWrapper with total_seconds"""
+    t = DurationWrapper(5)
+    assert t.count() == 5e9
+    assert t.total_seconds() == 5
+
+def test_set_count_on_DurationWrapper():
+    """Test set_count on DurationWrapper"""
+    t = DurationWrapper()
+    t.set_count(10)
+    assert t.count() == 10
+    assert t.total_seconds() == 10e-9
+    t.set_count(0)
+    assert t.count() == 0
+    assert t.total_seconds() == 0
+
+
+def test_return_a_DurationWrapper_from_cpp():
+    """Test returning a DurationWrapper from C++"""
+    t = _slsdet.test_return_DurationWrapper()
+    assert t.count() == 1.3e9
+    assert t.total_seconds() == 1.3
+
+def test_call_a_cpp_function_with_a_duration_wrapper():
+    """C++ functions can accept a DurationWrapper"""
+    t = DurationWrapper(5)
+    assert _slsdet.test_duration_to_ns(t) == 5e9
+    
+def test_call_a_cpp_function_converting_number_to_DurationWrapper():
+    """int and float can be converted to std::chrono::nanoseconds"""
+    assert _slsdet.test_duration_to_ns(0) == 0
+    assert _slsdet.test_duration_to_ns(3) == 3e9
+    assert _slsdet.test_duration_to_ns(1.3) == 1.3e9
+    assert _slsdet.test_duration_to_ns(10e-9) == 10
+
+def test_call_a_cpp_function_with_datetime_timedelta():
+    """datetime.timedelta can be converted to std::chrono::nanoseconds"""
+    import datetime
+    t = datetime.timedelta(seconds=5)
+    assert _slsdet.test_duration_to_ns(t) == 5e9
+    t = datetime.timedelta(seconds=0)
+    assert _slsdet.test_duration_to_ns(t) == 0
+    t = datetime.timedelta(seconds=1.3)
+    assert _slsdet.test_duration_to_ns(t) == 1.3e9

python/tests/test_PatternGenerator.py

@@ -0,0 +1,152 @@
+import pytest 
+from slsdet import PatternGenerator
+
+
+def apply_detconf(p):
+    """
+    Hacky workaround to apply detConf_mh02 to a pattern
+    """
+    DACMON = 0
+    cnt_en_3 = 1
+    pulse_counter_en = 2
+    cnt_en_1 = 3
+    par_load = 4
+    pulse_mux_ctr = 5
+    reset_cnt = 6
+    reset_periphery = 7
+    config_load = 8
+    cnt_en_0 = 9
+    tbl = 10
+    clk_ext = 11
+    trimbit_load_reg = 12
+    store = 13
+    data_in = 14
+    en_pll_clk = 15
+    cnt_en_2 = 16
+    DACINT = 17
+    data_out_slow = 18 #IN
+    COMP2_MON = 19 #IN
+    start_read = 20
+    dac_store = 21
+    CNT3_MON = 22 #IN
+    EN_PIX_DIG_MON = 23
+    clk_sel = 24
+    BUSY = 25 #IN
+    COMP3_MON = 26 #IN
+    CNT2_MON = 27 #IN
+
+    dbit_ena=62 #FIFO LATCH
+    adc_ena=63  #ADC ENABLE
+
+    #FPGA input/ouutputs
+    p.setoutput(DACMON)
+    p.setoutput(cnt_en_3)
+    p.setoutput(pulse_counter_en)
+    p.setoutput(cnt_en_1)
+    p.setoutput(par_load)
+    p.setoutput(pulse_mux_ctr)
+    p.setoutput(reset_cnt)
+    p.setoutput(reset_periphery)
+    p.setoutput(cnt_en_0)
+    p.setoutput(tbl)
+    p.setoutput(clk_ext)
+    p.setoutput(config_load)
+    p.setoutput(trimbit_load_reg)
+    p.setoutput(store)
+    p.setoutput(data_in)
+    p.setoutput(en_pll_clk)
+    p.setoutput(cnt_en_2)
+    p.setoutput(DACINT)
+    p.setinput(data_out_slow)
+    p.setinput(COMP2_MON)
+    p.setoutput(start_read)
+    p.setoutput(dac_store)
+    p.setinput(CNT3_MON)
+    p.setoutput(EN_PIX_DIG_MON)
+    p.setoutput(clk_sel)
+    p.setinput(BUSY)
+    p.setinput(COMP3_MON)
+    p.setinput(CNT2_MON)
+
+    #system signals
+    p.setoutput(adc_ena)
+    # FIFO LATCH
+    p.setoutput(dbit_ena)
+    return p    
+
+
+
+
+
+def test_first_two_PW():
+    p = PatternGenerator()
+
+    #The pattern is created with a single empty word
+    assert p.pattern.limits[0] == 0
+    assert p.pattern.limits[1] == 0
+
+    p.SB(8)
+    p.PW()
+
+    #When doing the first PW the empty word is overwritten
+    assert p.pattern.limits[0] == 0
+    assert p.pattern.limits[1] == 0
+    assert p.pattern.word[0] == 256
+
+    p.SB(9)
+    p.PW()
+
+    #When doing the second PW we add a new word
+    assert p.pattern.limits[0] == 0
+    assert p.pattern.limits[1] == 1
+    assert p.pattern.word[0] == 256
+    assert p.pattern.word[1] == 768
+
+def test_simple_pattern():
+    """
+    Using enable pll pattern for MH02
+    """
+    en_pll_clk = 15
+    p = PatternGenerator()
+    p = apply_detconf(p)
+    p.SB(en_pll_clk)
+    p.PW()
+    p.PW() 
+
+    lines = str(p).split("\n")
+
+    enable_pll_pattern = [
+        "patword 0x0000 0x0000000000008000",
+        "patword 0x0001 0x0000000000008000",
+        "patioctrl 0xc000000001b3ffff",
+        "patlimits 0x0000 0x0001",
+        "patloop 0 0x1fff 0x1fff",
+        "patnloop 0 0",
+        "patloop 1 0x1fff 0x1fff",
+        "patnloop 1 0",
+        "patloop 2 0x1fff 0x1fff",
+        "patnloop 2 0",
+        "patloop 3 0x1fff 0x1fff",
+        "patnloop 3 0",
+        "patloop 4 0x1fff 0x1fff",
+        "patnloop 4 0",
+        "patloop 5 0x1fff 0x1fff",
+        "patnloop 5 0",
+        "patwait 0 0x1fff",
+        "patwaittime 0 0",
+        "patwait 1 0x1fff",
+        "patwaittime 1 0",
+        "patwait 2 0x1fff",
+        "patwaittime 2 0",
+        "patwait 3 0x1fff",
+        "patwaittime 3 0",
+        "patwait 4 0x1fff",
+        "patwaittime 4 0",
+        "patwait 5 0x1fff",
+        "patwaittime 5 0",
+    ]
+
+    assert len(lines) == len(enable_pll_pattern)
+
+    for i, line in enumerate(lines):
+        assert line == enable_pll_pattern[i]

python/tests/test_bits.py

@@ -0,0 +1,50 @@
+from slsdet.bits import clearbit, clearbit_arr, setbit, setbit_arr
+import numpy as np
+
+
+def test_clearbit_on_python_int():
+    val = 5  # 0b101
+    r = clearbit(0, val)
+    assert r == 4
+    assert val == 5
+
+def test_setbit_on_python_int():
+    val = 5  # 0b101
+    r = setbit(1, val)
+    assert r == 7
+    assert val == 5
+
+
+def test_setbit_doesnt_change_type():
+    word = np.int32(5)
+    ret = setbit(0, word)
+    assert isinstance(ret, np.int32)
+
+
+def test_clearbit_doesnt_change_type():
+    word = np.uint8(5)
+    ret = clearbit(0, word)
+    assert isinstance(ret, np.uint8)
+
+
+
+def test_setbit_on_array_element():
+    arr = np.zeros(10, dtype=np.uint64)
+    arr[5] = setbit(0, arr[5])
+    arr[5] = setbit(1, arr[5])
+    arr[5] = setbit(4, arr[5])
+    assert arr[4] == 0
+    assert arr[5] == 19  # 0b10011
+    assert arr[6] == 0
+
+
+def test_setbit_arr():
+    arr = np.zeros(10, dtype=np.int32)
+    setbit_arr(3, arr[3:9])
+    assert all(arr == np.array((0, 0, 0, 8, 8, 8, 8, 8, 8, 0), dtype=np.int32))
+
+
+def test_clearbit_arr():
+    arr = np.array((5, 5, 5), dtype=np.int8)
+    clearbit_arr(0, arr)
+    assert all(arr == (4, 4, 4))

serverBin/xilinx_ctbDetectorServer_developer

@@ -0,0 +1 @@
+../slsDetectorServers/xilinx_ctbDetectorServer/bin/xilinx_ctbDetectorServer_developer

slsDetectorCalibration/dataStructures/gotthardDoubleModuleDataNew.h

@@ -1,155 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef GOTTHARD2MODULEDATANEW_H
-#define GOTTHARD2MODULEDATANEW_H
-#include "gotthardModuleDataNew.h"
-
-class gotthardDoubleModuleDataNew : public slsDetectorData<uint16_t> {
-
-  private:
-    const int nModules;
-    const int offset;
-    int iframe;
-
-  public:
-    /**
- Implements the slsReceiverData structure for the gotthard read out by a module
- i.e. using the slsReceiver (1x1280 pixels, 2 packets 1286 large etc.) \param c
- crosstalk parameter for the output buffer
-
-     */
-
-    gotthardDoubleModuleDataNew(int off = 24 * 2, int nmod = 2)
-        : slsDetectorData<uint16_t>(1280 * nmod, 1, nmod * (1280 * 2 + off)),
-          nModules(nmod), offset(off), iframe(0) {
-
-#ifdef BCHIP074_BCHIP075
-        cout << "This is a bchip074-bchip075 system " << endl;
-#endif
-
-        uint16_t **dMask;
-        int **dMap;
-        int ix, iy;
-        int ypixels = 1;
-        int xpixels = 1280 * nmod;
-        int imod, ipix;
-        dMask = new uint16_t *[1];
-        dMap = new int *[1];
-        dMap[0] = new int[1280 * nmod];
-        dMask[0] = new uint16_t[1280 * nmod];
-
-        for (int ix = 0; ix < xpixels; ix++) {
-            imod = ix % 2;
-            if (imod == 0)
-                ipix = ix / 2;
-            else
-                ipix = 1280 - 1 - ix / 2;
-            if (imod == 0)
-                dMap[0][ix] = ipix * 2 + offset;
-            else
-                dMap[0][ix] = 1280 * 2 + 2 * offset +
-                              ipix * 2; // dataSize-2-ix;//+2*offset;
-            // dMap[0][ix] = 2*ipix+offset*(imod+1)+1280*2*imod;
-            dMask[0][ix] = 0x0;
-#ifdef BCHIP074_BCHIP075
-            int ibad = ix / 2 + 1280 * imod;
-            if ((ibad >= 128 * 4 && ibad < 128 * 5) ||
-                (ibad >= 9 * 128 && ibad < 10 * 128) ||
-                (ibad >= (1280 + 128 * 4) && ibad < ibad >= (1280 + 128 * 6)))
-                dataROIMask[0][ix] = 0;
-#endif
-        }
-
-        setDataMap(dMap);
-        setDataMask(dMask);
-    };
-
-    /**
-
-       Returns the frame number for the given dataset.
-       \param buff pointer to the dataset
-       \returns frame number
-
-     */
-
-    int getFrameNumber(char *buff) {
-        if (offset >= sizeof(sls_detector_header))
-            return ((sls_detector_header *)buff)->frameNumber;
-        return iframe;
-    }; //*((int*)(buff+5))&0xffffff;};
-
-    /**
- gets the packets number (last packet is labelled with 0 and is replaced with
- 40) \param buff pointer to the memory \returns packet number
-
-     */
-
-    int getPacketNumber(char *buff) {
-        if (offset >= sizeof(sls_detector_header))
-            return ((sls_detector_header *)buff)->packetNumber;
-    };
-
-    /**
-
-       Loops over a memory slot until a complete frame is found (i.e. all
-       packets 0 to nPackets, same frame number). purely virtual func \param
-       data pointer to the memory to be analyzed \param ndata reference to the
-       amount of data found for the frame, in case the frame is incomplete at
-       the end of the memory slot \param dsize size of the memory slot to be
-       analyzed \returns pointer to the beginning of the last good frame (might
-       be incomplete if ndata smaller than dataSize), or NULL if no frame is
-       found
-
-    */
-    virtual char *findNextFrame(char *data, int &ndata, int dsize) {
-        if (dsize < dataSize)
-            ndata = dsize;
-        else
-            ndata = dataSize;
-        return data;
-    }
-
-    virtual char *readNextFrame(ifstream &filebin) {
-        int ff = -1, np = -1;
-        return readNextFrame(filebin, ff, np);
-    };
-
-    virtual char *readNextFrame(ifstream &filebin, int &ff) {
-        int np = -1;
-        return readNextFrame(filebin, ff, np);
-    };
-
-    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np) {
-        char *data = new char[dataSize];
-        char *d = readNextFrame(filebin, ff, np, data);
-        if (d == NULL) {
-            delete[] data;
-            data = NULL;
-        }
-        return data;
-    }
-
-    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np,
-                                char *data) {
-        char *retval = 0;
-        int nd;
-        int fnum = -1;
-        np = 0;
-        int pn;
-
-        //  cout << dataSize << endl;
-        if (ff >= 0)
-            fnum = ff;
-
-        if (filebin.is_open()) {
-            if (filebin.read(data, dataSize)) {
-                ff = getFrameNumber(data);
-                np = getPacketNumber(data);
-                return data;
-            }
-        }
-        return NULL;
-    };
-};
-
-#endif

slsDetectorCalibration/dataStructures/gotthardShortModuleData.h

@@ -1,105 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef GOTTHARDSHORTMODULEDATA_H
-#define GOTTHARDSHORTMODULEDATA_H
-#include "slsReceiverData.h"
-
-class gotthardShortModuleData : public slsReceiverData<uint16_t> {
-  public:
-    /**
- Implements the slsReceiverData structure for the gotthard short read out by a
- module i.e. using the slsReceiver (1x256 pixels, 1 packet 256 large etc.)
- \param c crosstalk parameter for the output buffer
-
-     */
-
-    gotthardShortModuleData(double c = 0)
-        : slsReceiverData<uint16_t>(xpixels, ypixels, npackets, buffersize),
-          xtalk(c) {
-
-        uint16_t **dMask;
-        int **dMap;
-        int ix, iy;
-        int offset = 2;
-
-        dMask = new uint16_t *[ypixels];
-        dMap = new int *[ypixels];
-        for (int i = 0; i < ypixels; i++) {
-            dMap[i] = new int[xpixels];
-            dMask[i] = new uint16_t[xpixels];
-        }
-
-        for (ix = 0; ix < ypixels; ++ix)
-            for (iy = 0; iy < xpixels; ++iy)
-                dMask[ix][iy] = 0x0;
-
-        for (ix = 0; ix < ypixels; ++ix)
-            for (iy = 0; iy < xpixels; ++iy) {
-                dMap[ix][iy] = offset;
-                offset++;
-            }
-
-        setDataMap(dMap);
-        setDataMask(dMask);
-    };
-
-    /**
-
-       Returns the frame number for the given dataset.
-       \param buff pointer to the dataset
-       \returns frame number
-
-     */
-
-    int getFrameNumber(char *buff) { return (*(int *)buff); };
-
-    /**
- gets the packets number (last packet is labelled with 0 and is replaced with
- 40) \param buff pointer to the memory \returns packet number
-
-     */
-
-    int getPacketNumber(char *buff) { return 1; };
-
-    /**
-returns the pixel value as double correcting for the output buffer crosstalk
- \param data pointer to the memory
- \param ix coordinate in the x direction
- \param iy coordinate in the y direction
- \returns channel value as double
-
-     */
-    double getValue(char *data, int ix, int iy = 0) {
-        // check how it is for gotthard
-        if (xtalk == 0)
-            return slsDetectorData<uint16_t>::getValue(data, ix, iy);
-        else
-            return slsDetectorData<uint16_t>::getValue(data, ix, iy) -
-                   xtalk *
-                       slsDetectorData<uint16_t>::getValue(data, ix - 1, iy);
-    };
-
-    /** sets the output buffer crosstalk correction parameter
-  \param c output buffer crosstalk correction parameter to be set
-  \returns current value for the output buffer crosstalk correction parameter
-
-     */
-    double setXTalk(double c) {
-        xtalk = c;
-        return xtalk;
-    }
-
-    /** gets the output buffer crosstalk parameter
-  \returns current value for the output buffer crosstalk correction parameter
-     */
-    double getXTalk() { return xtalk; }
-
-  private:
-    double xtalk; /**<output buffer crosstalk correction parameter */
-    const static int xpixels = 256;
-    const static int ypixels = 1;
-    const static int npackets = 1;
-    const static int buffersize = 518;
-};
-
-#endif

slsDetectorCalibration/singlePhotonDetector.h

@@ -503,6 +503,7 @@ class singlePhotonDetector : public analogDetector<uint16_t> {
                 }
 #endif
                 if (ee == PHOTON && val[iy * nx + ix] == max) {
+                    good = 1;
                     ee = PHOTON_MAX;
                     // cout << "**" <<id<< " " << iframe << " "  << nDark << " "
                     // << ix << " " << iy << " " << rms << " " << max << " " <<
@@ -536,7 +537,6 @@ class singlePhotonDetector : public analogDetector<uint16_t> {
 		      cout << max << " " <<  val[iy * nx + ix] << endl;
 		    }
 		    //else (clusters + nph)->print();
-                    good = 1;
                     if (eMin > 0 && tot < eMin)
                         good = 0;
                     if (eMax > 0 && tot > eMax)

slsDetectorGui/forms/form_tab_advanced.ui

@@ -72,7 +72,7 @@
       <enum>QTabWidget::North</enum>
      </property>
      <property name="currentIndex">
-      <number>3</number>
+      <number>2</number>
      </property>
      <property name="elideMode">
       <enum>Qt::ElideLeft</enum>
@@ -178,309 +178,6 @@
        </item>
       </layout>
      </widget>
-     <widget class="QWidget" name="tab_roi">
-      <property name="enabled">
-       <bool>false</bool>
-      </property>
-      <property name="font">
-       <font>
-        <family>Cantarell</family>
-        <pointsize>10</pointsize>
-       </font>
-      </property>
-      <attribute name="title">
-       <string>Region of Interest</string>
-      </attribute>
-      <layout class="QGridLayout" name="gridLayout_4">
-       <item row="1" column="0">
-        <widget class="QLabel" name="label_2">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="text">
-          <string>X Min:</string>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="8">
-        <widget class="QPushButton" name="btnClearRoi">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Minimum" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>0</width>
-           <height>35</height>
-          </size>
-         </property>
-         <property name="maximumSize">
-          <size>
-           <width>16777215</width>
-           <height>35</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Clear ROI at detector level&lt;/p&gt;&lt;p&gt;#clearroi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="text">
-          <string>Clear ROI </string>
-         </property>
-         <property name="icon">
-          <iconset resource="../include/icons.qrc">
-           <normaloff>:/icons/images/erase.png</normaloff>:/icons/images/erase.png</iconset>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="1">
-        <widget class="QSpinBox" name="spinXmin">
-         <property name="minimumSize">
-          <size>
-           <width>120</width>
-           <height>0</height>
-          </size>
-         </property>
-         <property name="maximumSize">
-          <size>
-           <width>120</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Set ROI at detector level&lt;/p&gt;&lt;p&gt;#roi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="minimum">
-          <number>-1</number>
-         </property>
-         <property name="maximum">
-          <number>1279</number>
-         </property>
-         <property name="value">
-          <number>-1</number>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="7">
-        <spacer name="horizontalSpacer_5">
-         <property name="orientation">
-          <enum>Qt::Horizontal</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>40</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="1" column="3">
-        <widget class="QLabel" name="label_3">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Set ROI at detector level&lt;/p&gt;&lt;p&gt;#roi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="text">
-          <string>X Max:</string>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="2">
-        <spacer name="horizontalSpacer_4">
-         <property name="orientation">
-          <enum>Qt::Horizontal</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>40</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="1" column="4">
-        <widget class="QSpinBox" name="spinXmax">
-         <property name="minimumSize">
-          <size>
-           <width>120</width>
-           <height>0</height>
-          </size>
-         </property>
-         <property name="maximumSize">
-          <size>
-           <width>120</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Set ROI at detector level&lt;/p&gt;&lt;p&gt;#roi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="minimum">
-          <number>-1</number>
-         </property>
-         <property name="maximum">
-          <number>1279</number>
-         </property>
-         <property name="value">
-          <number>-1</number>
-         </property>
-        </widget>
-       </item>
-       <item row="0" column="0">
-        <widget class="QLabel" name="label">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="text">
-          <string>Readout: </string>
-         </property>
-        </widget>
-       </item>
-       <item row="2" column="3">
-        <spacer name="verticalSpacer_3">
-         <property name="orientation">
-          <enum>Qt::Vertical</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>20</width>
-           <height>40</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="1" column="6">
-        <widget class="QPushButton" name="btnSetRoi">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Minimum" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>0</width>
-           <height>35</height>
-          </size>
-         </property>
-         <property name="maximumSize">
-          <size>
-           <width>16777215</width>
-           <height>35</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Set ROI at detector level&lt;/p&gt;&lt;p&gt;#roi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="text">
-          <string>Set ROI </string>
-         </property>
-         <property name="icon">
-          <iconset resource="../include/icons.qrc">
-           <normaloff>:/icons/images/refresh.png</normaloff>:/icons/images/refresh.png</iconset>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="5">
-        <spacer name="horizontalSpacer_6">
-         <property name="orientation">
-          <enum>Qt::Horizontal</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>40</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="0" column="1" colspan="4">
-        <widget class="QComboBox" name="comboReadout">
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Maximum" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>160</width>
-           <height>0</height>
-          </size>
-         </property>
-         <property name="maximumSize">
-          <size>
-           <width>16777215</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="font">
-          <font>
-           <family>Cantarell</family>
-           <pointsize>10</pointsize>
-          </font>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Select readout to set ROI at detector level&lt;/p&gt;&lt;p&gt;#roi#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-        </widget>
-       </item>
-      </layout>
-     </widget>
      <widget class="QWidget" name="tab_network">
       <property name="font">
        <font>
@@ -2238,11 +1935,6 @@ Exposure Time of a sub frame. Only for Eiger in 32 bit mode
  </widget>
  <tabstops>
   <tabstop>spinSetAllTrimbits</tabstop>
-  <tabstop>comboReadout</tabstop>
-  <tabstop>spinXmin</tabstop>
-  <tabstop>spinXmax</tabstop>
-  <tabstop>btnSetRoi</tabstop>
-  <tabstop>btnClearRoi</tabstop>
   <tabstop>comboDetector</tabstop>
   <tabstop>spinControlPort</tabstop>
   <tabstop>spinStopPort</tabstop>

slsDetectorGui/forms/form_tab_settings.ui

@@ -38,87 +38,21 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout">
-   <item row="1" column="2" colspan="3">
-    <widget class="QComboBox" name="comboHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <item>
-      <property name="text">
-       <string>0</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>90</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>110</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>120</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>150</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>180</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>200</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="3" column="0">
-    <widget class="QLabel" name="lblSettings">
+   <item row="4" column="5">
+    <widget class="QSpinBox" name="spinThreshold2">
      <property name="enabled">
-      <bool>true</bool>
+      <bool>false</bool>
      </property>
      <property name="minimumSize">
       <size>
-       <width>110</width>
-       <height>0</height>
+       <width>140</width>
+       <height>25</height>
       </size>
      </property>
      <property name="maximumSize">
       <size>
-       <width>110</width>
-       <height>16777215</height>
+       <width>140</width>
+       <height>25</height>
       </size>
      </property>
      <property name="font">
@@ -128,52 +62,42 @@
       </font>
      </property>
      <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Settings of the detector. &lt;/p&gt;&lt;p&gt; #settings#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy of 2nd counter&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
-     <property name="text">
-      <string>Settings:</string>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
      </property>
     </widget>
    </item>
-   <item row="1" column="0">
-    <widget class="QLabel" name="lblComboHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>High Voltage: </string>
-     </property>
-    </widget>
-   </item>
-   <item row="8" column="2">
-    <spacer name="verticalSpacer">
+   <item row="4" column="9">
+    <spacer name="horizontalSpacer_4">
      <property name="orientation">
-      <enum>Qt::Vertical</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Expanding</enum>
+      <enum>Qt::Horizontal</enum>
      </property>
      <property name="sizeHint" stdset="0">
       <size>
-       <width>20</width>
+       <width>40</width>
        <height>20</height>
       </size>
      </property>
     </spacer>
    </item>
-   <item row="7" column="4">
+   <item row="6" column="4">
     <widget class="QCheckBox" name="chkCounter3">
      <property name="enabled">
       <bool>false</bool>
@@ -201,29 +125,7 @@
      </property>
     </widget>
    </item>
-   <item row="2" column="0">
-    <widget class="QLabel" name="lblSpinHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>High Voltage: </string>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="7">
+   <item row="4" column="7">
     <spacer name="horizontalSpacer_3">
      <property name="orientation">
       <enum>Qt::Horizontal</enum>
@@ -239,97 +141,7 @@
      </property>
     </spacer>
    </item>
-   <item row="7" column="2">
-    <widget class="QCheckBox" name="chkCounter1">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>50</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable 1st counter&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>1</string>
-     </property>
-     <property name="checked">
-      <bool>true</bool>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="0">
-    <widget class="QLabel" name="lblThreshold">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy. The trim energy values need to be loaded first using &amp;quot;trimen&amp;quot;&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;#trimen#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>Threshold:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="6" column="0">
-    <widget class="QLabel" name="lblDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Dynamic Range of pixel/channel of detector&lt;/p&gt;&lt;p&gt;#dr#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>Dynamic Range:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="2" column="2" colspan="3">
+   <item row="1" column="2" colspan="3">
     <widget class="QSpinBox" name="spinHV">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
@@ -369,8 +181,8 @@
      </property>
     </widget>
    </item>
-   <item row="7" column="3">
-    <widget class="QCheckBox" name="chkCounter2">
+   <item row="6" column="2">
+    <widget class="QCheckBox" name="chkCounter1">
      <property name="enabled">
       <bool>false</bool>
      </property>
@@ -387,17 +199,222 @@
       </font>
      </property>
      <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable 2nd counter&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable 1st counter&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
      <property name="text">
-      <string>2</string>
+      <string>1</string>
      </property>
      <property name="checked">
       <bool>true</bool>
      </property>
     </widget>
    </item>
-   <item row="3" column="2" colspan="3">
+   <item row="7" column="2">
+    <spacer name="verticalSpacer">
+     <property name="orientation">
+      <enum>Qt::Vertical</enum>
+     </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Expanding</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>20</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="0" column="0">
+    <spacer name="horizontalSpacer_2">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>40</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="4" column="6">
+    <widget class="QSpinBox" name="spinThreshold3">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy of 3rd counter&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="4" column="2" colspan="3">
+    <widget class="QSpinBox" name="spinThreshold">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy. The trim energy values need to be loaded first using &amp;quot;trimen&amp;quot;&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;#trimen#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="5" column="2" colspan="3">
+    <widget class="QComboBox" name="comboDynamicRange">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>0</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Dynamic Range of pixel/channel of detector&lt;/p&gt;&lt;p&gt;#dr#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <item>
+      <property name="text">
+       <string>1.67772e+07</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>65535</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>4095</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>255</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>7</string>
+      </property>
+     </item>
+    </widget>
+   </item>
+   <item row="6" column="0">
+    <widget class="QLabel" name="lblCounter">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable counters&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>Counters:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="2" colspan="3">
     <widget class="QComboBox" name="comboSettings">
      <property name="enabled">
       <bool>true</bool>
@@ -542,7 +559,7 @@
      </item>
     </widget>
    </item>
-   <item row="5" column="8">
+   <item row="4" column="8">
     <widget class="QPushButton" name="btnSetThreshold">
      <property name="enabled">
       <bool>true</bool>
@@ -626,130 +643,7 @@
      </property>
     </widget>
    </item>
-   <item row="4" column="0">
-    <widget class="QLabel" name="lblGainMode">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Gain Mode of the detector&lt;/p&gt;&lt;p&gt;#gainmode#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;p&gt;Fix G0 is to be used with utmost caution. Can damage the detector!&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>Gain Mode:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="2" colspan="3">
-    <widget class="QSpinBox" name="spinThreshold">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy. The trim energy values need to be loaded first using &amp;quot;trimen&amp;quot;&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;#trimen#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="5">
-    <widget class="QSpinBox" name="spinThreshold2">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy of 2nd counter&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="4" column="2" colspan="3">
+   <item row="3" column="2" colspan="3">
     <widget class="QComboBox" name="comboGainMode">
      <property name="enabled">
       <bool>false</bool>
@@ -813,21 +707,15 @@
      </item>
     </widget>
    </item>
-   <item row="5" column="6">
-    <widget class="QSpinBox" name="spinThreshold3">
+   <item row="6" column="3">
+    <widget class="QCheckBox" name="chkCounter2">
      <property name="enabled">
       <bool>false</bool>
      </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
      <property name="maximumSize">
       <size>
-       <width>140</width>
-       <height>25</height>
+       <width>50</width>
+       <height>16777215</height>
       </size>
      </property>
      <property name="font">
@@ -837,112 +725,18 @@
       </font>
      </property>
      <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy of 3rd counter&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable 2nd counter&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
+     <property name="text">
+      <string>2</string>
      </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
+     <property name="checked">
+      <bool>true</bool>
      </property>
     </widget>
    </item>
-   <item row="6" column="2" colspan="3">
-    <widget class="QComboBox" name="comboDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>0</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="font">
-      <font>
-       <family>Cantarell</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Dynamic Range of pixel/channel of detector&lt;/p&gt;&lt;p&gt;#dr#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <item>
-      <property name="text">
-       <string>1.67772e+07</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>65535</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>4095</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>255</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>7</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="3" column="1">
-    <spacer name="horizontalSpacer">
-     <property name="orientation">
-      <enum>Qt::Horizontal</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Fixed</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>20</width>
-       <height>20</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="0" column="0">
-    <spacer name="horizontalSpacer_2">
-     <property name="orientation">
-      <enum>Qt::Horizontal</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>40</width>
-       <height>20</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="7" column="0">
-    <widget class="QLabel" name="lblCounter">
+   <item row="5" column="0">
+    <widget class="QLabel" name="lblDynamicRange">
      <property name="enabled">
       <bool>false</bool>
      </property>
@@ -965,30 +759,147 @@
       </font>
      </property>
      <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Enable counters&lt;/p&gt;&lt;p&gt;#counters#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Dynamic Range of pixel/channel of detector&lt;/p&gt;&lt;p&gt;#dr#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
      <property name="text">
-      <string>Counters:</string>
+      <string>Dynamic Range:</string>
      </property>
     </widget>
    </item>
-   <item row="5" column="9">
-    <spacer name="horizontalSpacer_4">
+   <item row="2" column="0">
+    <widget class="QLabel" name="lblSettings">
+     <property name="enabled">
+      <bool>true</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Settings of the detector. &lt;/p&gt;&lt;p&gt; #settings#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>Settings:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="1">
+    <spacer name="horizontalSpacer">
      <property name="orientation">
       <enum>Qt::Horizontal</enum>
      </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Fixed</enum>
+     </property>
      <property name="sizeHint" stdset="0">
       <size>
-       <width>40</width>
+       <width>20</width>
        <height>20</height>
       </size>
      </property>
     </spacer>
    </item>
+   <item row="4" column="0">
+    <widget class="QLabel" name="lblThreshold">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Threshold energy. The trim energy values need to be loaded first using &amp;quot;trimen&amp;quot;&lt;/p&gt;&lt;p&gt;#threshold#&lt;/p&gt;&lt;p&gt;#trimen#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>Threshold:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="3" column="0">
+    <widget class="QLabel" name="lblGainMode">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Gain Mode of the detector&lt;/p&gt;&lt;p&gt;#gainmode#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;p&gt;Fix G0 is to be used with utmost caution. Can damage the detector!&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>Gain Mode:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="1" column="0">
+    <widget class="QLabel" name="lblSpinHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="font">
+      <font>
+       <family>Cantarell</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>High Voltage: </string>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <tabstops>
-  <tabstop>comboHV</tabstop>
   <tabstop>spinHV</tabstop>
   <tabstop>comboSettings</tabstop>
   <tabstop>comboGainMode</tabstop>

slsDetectorGui/include/qTabAdvanced.h

@@ -38,9 +38,6 @@ class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     void SetRxrUDPMAC(bool force = false);
     void ForceSetRxrUDPMAC();
     void SetRxrZMQPort(int port);
-    void GetROI();
-    void ClearROI();
-    void SetROI();
     void SetAllTrimbits();
     void SetNumStoragecells(int value);
     void SetSubExposureTime();

slsDetectorGui/src/qDetectorMain.cpp

@@ -192,7 +192,6 @@ void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
         actionLoadTrimbits->setEnabled(true);
         actionSaveTrimbits->setEnabled(true);
         break;
-    case slsDetectorDefs::GOTTHARD:
     case slsDetectorDefs::JUNGFRAU:
     case slsDetectorDefs::MOENCH:
     case slsDetectorDefs::GOTTHARD2:
@@ -405,12 +404,12 @@ void qDetectorMain::ExecuteUtilities(QAction *action) {
 
 void qDetectorMain::ExecuteHelp(QAction *action) {
     if (action == actionAbout) {
-        LOG(logINFO) << "About Common GUI for Jungfrau, Eiger, Mythen3, "
-                        "Gotthard, Gotthard2 and Moench detectors";
+        LOG(logDEBUG) << "About Common GUI for Jungfrau, Eiger, Mythen3, "
+                         "Gotthard2 and Moench detectors";
 
-        std::string clientVersion = "unknown";
+        std::string packageVersion = "unknown";
         try {
-            clientVersion = det->getClientVersion();
+            packageVersion = det->getPackageVersion();
         }
         CATCH_DISPLAY("Could not get client version.",
                       "qDetectorMain::ExecuteHelp")
@@ -419,12 +418,12 @@ void qDetectorMain::ExecuteHelp(QAction *action) {
             qDefs::INFORMATION,
             "<p style=\"font-family:verdana;\">"
 
-            "<b>SLS Detector Client version:  " +
-                clientVersion +
+            "<b>SLS Detector Package:  v" +
+                packageVersion +
                 "</b><br><br>"
 
                 "Common GUI to control the SLS Detectors: "
-                "Jungfrau, Eiger, Mythen3, Gotthard, Gotthard2 and "
+                "Jungfrau, Eiger, Mythen3, Gotthard2 and "
                 "Moench.<br><br>"
 
                 "It can be operated in parallel with the command "

slsDetectorGui/src/qDrawPlot.cpp

@@ -83,9 +83,7 @@ void qDrawPlot::SetupWidgetWindow() {
         fileSaveName = "Image";
     }
 
-    gotthard25 = ((detType == slsDetectorDefs::GOTTHARD2 ||
-                   detType == slsDetectorDefs::GOTTHARD) &&
-                  det->size() == 2);
+    gotthard25 = (detType == slsDetectorDefs::GOTTHARD2 && det->size() == 2);
 
     SetupPlots();
     SetDataCallBack(true);

slsDetectorGui/src/qTabAdvanced.cpp

@@ -28,9 +28,6 @@ void qTabAdvanced::SetupWidgetWindow() {
         spinSubDeadTime->setEnabled(true);
         comboSubDeadTimeUnit->setEnabled(true);
         break;
-    case slsDetectorDefs::GOTTHARD:
-        tab_roi->setEnabled(true);
-        break;
     case slsDetectorDefs::MYTHEN3:
         tab_trimming->setEnabled(true);
         lblDiscardBits->setEnabled(true);
@@ -114,14 +111,6 @@ void qTabAdvanced::Initialization() {
     connect(spinRxrZMQPort, SIGNAL(valueChanged(int)), this,
             SLOT(SetRxrZMQPort(int)));
 
-    // roi
-    if (tab_roi->isEnabled()) {
-        connect(comboReadout, SIGNAL(currentIndexChanged(int)), this,
-                SLOT(GetROI()));
-        connect(btnSetRoi, SIGNAL(clicked()), this, SLOT(SetROI()));
-        connect(btnClearRoi, SIGNAL(clicked()), this, SLOT(ClearROI()));
-    }
-
     // storage cells
     if (lblNumStoragecells->isEnabled()) {
         connect(spinNumStoragecells, SIGNAL(valueChanged(int)), this,
@@ -173,23 +162,16 @@ void qTabAdvanced::PopulateDetectors() {
     LOG(logDEBUG) << "Populating detectors";
     disconnect(comboDetector, SIGNAL(currentIndexChanged(int)), this,
                SLOT(SetDetector()));
-    disconnect(comboReadout, SIGNAL(currentIndexChanged(int)), this,
-               SLOT(GetROI()));
 
     comboDetector->clear();
-    comboReadout->clear();
     auto res = det->getHostname();
     for (auto &it : res) {
         comboDetector->addItem(QString(it.c_str()));
-        comboReadout->addItem(QString(it.c_str()));
     }
     comboDetector->setCurrentIndex(0);
-    comboReadout->setCurrentIndex(0);
 
     connect(comboDetector, SIGNAL(currentIndexChanged(int)), this,
             SLOT(SetDetector()));
-    connect(comboReadout, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(GetROI()));
 }
 
 void qTabAdvanced::GetControlPort() {
@@ -570,40 +552,6 @@ void qTabAdvanced::SetRxrZMQPort(int port) {
                  &qTabAdvanced::GetRxrZMQPort)
 }
 
-void qTabAdvanced::GetROI() {
-    LOG(logDEBUG) << "Getting ROI";
-    try {
-        slsDetectorDefs::ROI roi =
-            det->getROI({comboReadout->currentIndex()})[0];
-        spinXmin->setValue(roi.xmin);
-        spinXmax->setValue(roi.xmax);
-    }
-    CATCH_DISPLAY("Could not get ROI.", "qTabAdvanced::GetROI")
-}
-
-void qTabAdvanced::ClearROI() {
-    LOG(logINFO) << "Clearing ROI";
-    spinXmin->setValue(-1);
-    spinXmax->setValue(-1);
-    SetROI();
-    LOG(logDEBUG) << "ROIs cleared";
-}
-
-void qTabAdvanced::SetROI() {
-
-    slsDetectorDefs::ROI roi(spinXmin->value(), spinXmax->value());
-
-    // set roi
-    LOG(logINFO) << "Setting ROI: [" << roi.xmin << ", " << roi.xmax << "]";
-    try {
-        det->setROI(roi, {comboReadout->currentIndex()});
-    }
-    CATCH_DISPLAY("Could not set these ROIs.", "qTabAdvanced::SetROI")
-
-    // update corrected list
-    GetROI();
-}
-
 void qTabAdvanced::GetAllTrimbits() {
     LOG(logDEBUG) << "Getting all trimbits value";
     disconnect(spinSetAllTrimbits, SIGNAL(valueChanged(int)), this,
@@ -831,11 +779,6 @@ void qTabAdvanced::Refresh() {
     // update all network widgets
     SetDetector();
 
-    // roi
-    if (tab_roi->isEnabled()) {
-        GetROI();
-    }
-
     // storage cells
     if (lblNumStoragecells->isEnabled()) {
         GetNumStoragecells();

slsDetectorGui/src/qTabDeveloper.cpp

@@ -34,15 +34,6 @@ void qTabDeveloper::SetupWidgetWindow() {
                     new qDacWidget(this, det, false, sls::ToString(it), it));
             }
             break;
-        case slsDetectorDefs::GOTTHARD:
-            ind = slsDetectorDefs::TEMPERATURE_ADC;
-            adcWidgets.push_back(
-                new qDacWidget(this, det, false, sls::ToString(ind), ind));
-            ind = slsDetectorDefs::TEMPERATURE_FPGA;
-            adcWidgets.push_back(
-                new qDacWidget(this, det, false, sls::ToString(ind), ind));
-            break;
-
         case slsDetectorDefs::JUNGFRAU:
             ind = slsDetectorDefs::TEMPERATURE_ADC;
             adcWidgets.push_back(

slsDetectorGui/src/qTabPlot.cpp

@@ -47,7 +47,6 @@ void qTabPlot::SetupWidgetWindow() {
     // enabling according to det type
     is1d = false;
     switch (det->getDetectorType().squash()) {
-    case slsDetectorDefs::GOTTHARD:
     case slsDetectorDefs::MYTHEN3:
         is1d = true;
         break;

slsDetectorGui/src/qTabSettings.cpp

@@ -18,8 +18,6 @@ qTabSettings::qTabSettings(QWidget *parent, Detector *detector)
 qTabSettings::~qTabSettings() {}
 
 void qTabSettings::SetupWidgetWindow() {
-    comboHV->hide();
-    lblComboHV->hide();
     lblSpinHV->hide();
     spinHV->hide();
     hvmin = HV_MIN;
@@ -100,9 +98,6 @@ void qTabSettings::SetupWidgetWindow() {
     } else if (detType == slsDetectorDefs::MOENCH) {
         lblSpinHV->show();
         spinHV->show();
-    } else if (detType == slsDetectorDefs::GOTTHARD) {
-        comboHV->show();
-        lblComboHV->show();
     } else if (detType == slsDetectorDefs::GOTTHARD2) {
         lblSpinHV->show();
         spinHV->show();
@@ -189,8 +184,6 @@ void qTabSettings::ShowFixG0(bool expertMode) {
 
 void qTabSettings::Initialization() {
     // High voltage
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
     connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
 
     // Settings
@@ -231,12 +224,10 @@ void qTabSettings::Initialization() {
 
 void qTabSettings::GetHighVoltage() {
     // not enabled for eiger
-    if (!comboHV->isVisible() && !spinHV->isVisible())
+    if (!spinHV->isVisible())
         return;
     LOG(logDEBUG) << "Getting High Voltage";
     disconnect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    disconnect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-               SLOT(SetHighVoltage()));
     try {
         Result<int> retvals = det->getHighVoltage();
 
@@ -258,55 +249,19 @@ void qTabSettings::GetHighVoltage() {
                 master_retvals.tsquash("Inconsistent values for high voltage.");
         }
 
-        // spinHV
-        if (spinHV->isVisible()) {
-            if (retval != 0 && retval < hvmin && retval > HV_MAX) {
-                throw RuntimeError(std::string("Unknown High Voltage: ") +
-                                   std::to_string(retval));
-            }
-            spinHV->setValue(retval);
-        }
-        // combo HV
-        else {
-            switch (retval) {
-            case 0:
-                comboHV->setCurrentIndex(HV_0);
-                break;
-            case 90:
-                comboHV->setCurrentIndex(HV_90);
-                break;
-            case 110:
-                comboHV->setCurrentIndex(HV_110);
-                break;
-            case 120:
-                comboHV->setCurrentIndex(HV_120);
-                break;
-            case 150:
-                comboHV->setCurrentIndex(HV_150);
-                break;
-            case 180:
-                comboHV->setCurrentIndex(HV_180);
-                break;
-            case 200:
-                comboHV->setCurrentIndex(HV_200);
-                break;
-            default:
-                throw RuntimeError(std::string("Unknown High Voltage: ") +
-                                   std::to_string(retval));
-            }
+        if (retval != 0 && retval < hvmin && retval > HV_MAX) {
+            throw RuntimeError(std::string("Unknown High Voltage: ") +
+                               std::to_string(retval));
         }
+        spinHV->setValue(retval);
     }
     CATCH_DISPLAY("Could not get high voltage.", "qTabSettings::GetHighVoltage")
     connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
 }
 
 void qTabSettings::SetHighVoltage() {
-    int val = (comboHV->isVisible() ? comboHV->currentText().toInt()
-                                    : spinHV->value());
+    int val = spinHV->value();
     LOG(logINFO) << "Setting high voltage:" << val;
-
     try {
         det->setHighVoltage(val);
     }

slsDetectorServers/CMakeLists.txt

@@ -13,7 +13,6 @@ install(TARGETS slsProjectCSettings
 add_subdirectory(ctbDetectorServer)
 add_subdirectory(xilinx_ctbDetectorServer)
 add_subdirectory(eigerDetectorServer)
-add_subdirectory(gotthardDetectorServer)
 add_subdirectory(jungfrauDetectorServer)
 add_subdirectory(mythen3DetectorServer)
 add_subdirectory(gotthard2DetectorServer)

slsDetectorServers/compileAllServers.sh

@@ -4,7 +4,6 @@
 # empty branch = developer branch in updateAPIVersion.sh
 branch=""
 det_list=("ctbDetectorServer  
-	gotthardDetectorServer  
 	gotthard2DetectorServer 
 	jungfrauDetectorServer 
 	mythen3DetectorServer 

slsDetectorServers/compileAllServers_noAPIUpdate.sh

@@ -4,7 +4,6 @@
 # empty branch = developer branch in updateAPIVersion.sh
 branch=""
 det_list=("ctbDetectorServer" 
-	"gotthardDetectorServer" 
 	"gotthard2DetectorServer"
 	"jungfrauDetectorServer"
 	"mythen3DetectorServer"

slsDetectorServers/ctbDetectorServer/RegisterDefs.h

@@ -65,8 +65,8 @@
     (0x000000FF << STATUS_PT_CNTRL_STTS_OFF_OFST)
 #define STATUS_IDLE_MSK (0x677FF)
 
-/* Look at me RO register TODO */
-#define LOOK_AT_ME_REG (0x03 << MEM_MAP_SHIFT)
+/* Register containing the git hash of the FPGA firmware */
+#define FIRMWARE_GIT_HASH_REG (0x03 << MEM_MAP_SHIFT)
 
 /* System Status RO register */
 #define SYSTEM_STATUS_REG (0x04 << MEM_MAP_SHIFT)
@@ -198,12 +198,43 @@
 #define FIFO_TIN_STATUS_FIFO_EMPTY_4_MSK    (0x00000001 << FIFO_TIN_STATUS_FIFO_EMPTY_4_OFST)
 #define FIFO_TIN_STATUS_FIFO_EMPTY_ALL_MSK  (0x0000000F << FIFO_TIN_STATUS_FIFO_EMPTY_1_OFST)
 
+/* FIFO Transceiver Fill level RO register */
+#define FIFO_TIN_FILL_REG                   (0x45 << MEM_MAP_SHIFT)
+#define FIFO_TIN_FILL_FIFO_1_OFST           (0)
+#define FIFO_TIN_FILL_FIFO_1_MSK            (0x00003FFF << FIFO_TIN_FILL_FIFO__1_OFST)
+#define FIFO_TIN_FILL_FIFO_2_OFST           (16)
+#define FIFO_TIN_FILL_FIFO_2_MSK            (0x00003FFF << FIFO_TIN_FILL_FIFO__2_OFST)
+
+/* FIFO ADC Fill level RO register */
+#define FIFO_ADC_FILL_REG                   (0x46 << MEM_MAP_SHIFT)
+#define FIFO_ADC_FILL_FIFO_OFST             (0)
+#define FIFO_ADC_FILL_FIFO_MSK              (0x00003FFF << FIFO_ADC_FILL_FIFO_OFST)
+
+/* Enable continuos readout register */
+#define CONTINUOUS_RO_ENABLE_REG            (0x47 << MEM_MAP_SHIFT)
+#define CONTINUOUS_RO_ADC_ENABLE_OFST       (0)
+#define CONTINUOUS_RO_TIN_ENABLE_OFST       (1)
+#define CONTINUOUS_RO_DBIT_ENABLE_OFST      (2)
+#define CONTINUOUS_RO_ADC_ENABLE_MSK        (0x00000001 << CONTINUOUS_RO_ADC_ENABLE_OFST)
+#define CONTINUOUS_RO_TIN_ENABLE_MSK        (0x00000001 << CONTINUOUS_RO_TIN_ENABLE_OFST)
+#define CONTINUOUS_RO_DBIT_ENABLE_MSK       (0x00000001 << CONTINUOUS_RO_DBIT_ENABLE_OFST)
+#define DBIT_INJECT_COUNTER_ENA_OFST        (3) // continuously injects fake-data into the dbit fifo when enabled. 
+#define DBIT_INJECT_COUNTER_ENA_MSK         (0x00000001 << DBIT_INJECT_COUNTER_ENA_OFST)
+#define DBIT_INJECT_COUNTER_CLKDIV_OFST     (8) // Additional clock divider for fake-data injection
+#define DBIT_INJECT_COUNTER_CLKDIV_MSK      (0x000000FF << DBIT_INJECT_COUNTER_CLKDIV_OFST)
+
+/* 64-bit FPGA chip ID. Unique for every device. read-only */
+#define FPGA_chipID_0_REG                       (0x48 << MEM_MAP_SHIFT)
+#define FPGA_chipID_1_REG                       (0x49 << MEM_MAP_SHIFT)
+
 /* FIFO Transceiver In 64 bit RO register */
 #define FIFO_TIN_LSB_REG (0x31 << MEM_MAP_SHIFT)
 #define FIFO_TIN_MSB_REG (0x32 << MEM_MAP_SHIFT)
 
 /* FIFO Digital In Status RO register */
 #define FIFO_DIN_STATUS_REG             (0x3B << MEM_MAP_SHIFT)
+#define FIFO_DIN_STATUS_FIFO_FILL_OFST  (0)
+#define FIFO_DIN_STATUS_FIFO_FILL_MSK   (0x00003FFF)
 #define FIFO_DIN_STATUS_FIFO_FULL_OFST  (30)
 #define FIFO_DIN_STATUS_FIFO_FULL_MSK   (0x00000001 << FIFO_DIN_STATUS_FIFO_FULL_OFST)
 #define FIFO_DIN_STATUS_FIFO_EMPTY_OFST (31)
@@ -273,44 +304,6 @@
 #define DUMMY_TRNSCVR_FIFO_RD_STRBE_OFST    (14)
 #define DUMMY_TRNSCVR_FIFO_RD_STRBE_MSK     (0x00000001 << DUMMY_TRNSCVR_FIFO_RD_STRBE_OFST)
 
-/* Receiver IP Address RW register */
-#define RX_IP_REG (0x45 << MEM_MAP_SHIFT)
-
-/* UDP Port RW register */
-#define UDP_PORT_REG (0x46 << MEM_MAP_SHIFT)
-
-#define UDP_PORT_RX_OFST (0)
-#define UDP_PORT_RX_MSK  (0x0000FFFF << UDP_PORT_RX_OFST)
-#define UDP_PORT_TX_OFST (16)
-#define UDP_PORT_TX_MSK  (0x0000FFFF << UDP_PORT_TX_OFST)
-
-/* Receiver Mac Address 64 bit RW register */
-#define RX_MAC_LSB_REG (0x47 << MEM_MAP_SHIFT)
-#define RX_MAC_MSB_REG (0x48 << MEM_MAP_SHIFT)
-
-#define RX_MAC_LSB_OFST (0)
-#define RX_MAC_LSB_MSK  (0xFFFFFFFF << RX_MAC_LSB_OFST)
-#define RX_MAC_MSB_OFST (0)
-#define RX_MAC_MSB_MSK  (0x0000FFFF << RX_MAC_MSB_OFST)
-
-/* Detector/ Transmitter Mac Address 64 bit RW register */
-#define TX_MAC_LSB_REG (0x49 << MEM_MAP_SHIFT)
-#define TX_MAC_MSB_REG (0x4A << MEM_MAP_SHIFT)
-
-#define TX_MAC_LSB_OFST (0)
-#define TX_MAC_LSB_MSK  (0xFFFFFFFF << TX_MAC_LSB_OFST)
-#define TX_MAC_MSB_OFST (0)
-#define TX_MAC_MSB_MSK  (0x0000FFFF << TX_MAC_MSB_OFST)
-
-/* Detector/ Transmitter IP Address RW register */
-#define TX_IP_REG (0x4B << MEM_MAP_SHIFT)
-
-/* Detector/ Transmitter IP Checksum RW register */
-#define TX_IP_CHECKSUM_REG (0x4C << MEM_MAP_SHIFT)
-
-#define TX_IP_CHECKSUM_OFST (0)
-#define TX_IP_CHECKSUM_MSK  (0x0000FFFF << TX_IP_CHECKSUM_OFST)
-
 /* Configuration RW register */
 #define CONFIG_REG (0x4D << MEM_MAP_SHIFT)
 

slsDetectorServers/ctbDetectorServer/slsDetectorFunctionList.c

@@ -15,6 +15,7 @@
 #include "loadPattern.h"
 
 #include <netinet/in.h>
+#include <stdlib.h>
 #include <string.h>
 #include <unistd.h> // usleep
 #ifdef VIRTUAL
@@ -1095,26 +1096,17 @@ int setNumTransceiverSamples(int val) {
 int getNumTransceiverSamples() { return ntSamples; }
 
 int setExpTime(int64_t val) {
-    if (val < 0) {
-        LOG(logERROR, ("Invalid exptime: %lld ns\n", (long long int)val));
-        return FAIL;
-    }
-    LOG(logINFO, ("Setting exptime %lld ns\n", (long long int)val));
-    val *= (1E-3 * clkFrequency[RUN_CLK]);
-    setPatternWaitTime(0, val);
+    setPatternWaitInterval(0, val);
 
     // validate for tolerance
     int64_t retval = getExpTime();
-    val /= (1E-3 * clkFrequency[RUN_CLK]);
     if (val != retval) {
         return FAIL;
     }
     return OK;
 }
 
-int64_t getExpTime() {
-    return getPatternWaitTime(0) / (1E-3 * clkFrequency[RUN_CLK]);
-}
+int64_t getExpTime() { return getPatternWaitInterval(0); }
 
 int setPeriod(int64_t val) {
     if (val < 0) {
@@ -2267,11 +2259,23 @@ void *start_timer(void *arg) {
     int packetsPerFrame = ceil((double)imageSize / (double)dataSize);
 
     // Generate Data
-    char imageData[imageSize];
+    char *imageData = (char *)malloc(imageSize);
     memset(imageData, 0, imageSize);
+
+    if (imageData == NULL) {
+        LOG(logERROR, ("Can not allocate image Data RAM."
+                       "Probable cause: Memory Leak.\n"));
+        return NULL;
+    }
+    /*
     for (int i = 0; i < imageSize; i += sizeof(uint16_t)) {
         *((uint16_t *)(imageData + i)) = i;
     }
+    */
+
+    for (int i = 0; i < imageSize; i += 2 * sizeof(uint64_t)) {
+        *((uint64_t *)(imageData + i)) = 0xffffffffffffffff;
+    }
 
     // Send data
     uint64_t frameNr = 0;
@@ -2328,6 +2332,8 @@ void *start_timer(void *arg) {
         setNextFrameNumber(frameNr + numFrames);
     }
 
+    free(imageData);
+
     closeUDPSocket(0);
 
     sharedMemory_setStatus(IDLE);

slsDetectorServers/gotthardDetectorServer/.target-makefrag

@@ -1 +0,0 @@
-AXIS_BUILDTYPE ?= cris-axis-linux-gnu

slsDetectorServers/gotthardDetectorServer/CMakeLists.txt

@@ -1,45 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-add_executable(gotthardDetectorServer_virtual
-    slsDetectorFunctionList.c
-    ../slsDetectorServer/src/slsDetectorServer.c
-    ../slsDetectorServer/src/slsDetectorServer_funcs.c
-    ../slsDetectorServer/src/communication_funcs.c
-    ../slsDetectorServer/src/blackfin.c
-    ../slsDetectorServer/src/AD9252.c
-    ../slsDetectorServer/src/AD9257.c  
-    ../slsDetectorServer/src/LTC2620.c         
-    ../slsDetectorServer/src/common.c
-    ../slsDetectorServer/src/commonServerFunctions.c    
-    ../slsDetectorServer/src/programViaBlackfin.c
-    ../slsDetectorServer/src/communication_funcs_UDP.c    
-    ../slsDetectorServer/src/sharedMemory.c
-    ../../slsSupportLib/src/md5.c
-)
-
-include_directories(
-    ../slsDetectorServer/include
-    ../../slsSupportLib/include
-)
-
-target_include_directories(gotthardDetectorServer_virtual
-    PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}
-)
-
-target_compile_definitions(gotthardDetectorServer_virtual
-    PUBLIC GOTTHARDD VIRTUAL STOP_SERVER
-)
-
-target_link_libraries(gotthardDetectorServer_virtual
-    PUBLIC pthread rt slsProjectCSettings
-) 
-
-set_target_properties(gotthardDetectorServer_virtual PROPERTIES
-    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-)
-
-install(TARGETS gotthardDetectorServer_virtual
-    RUNTIME  DESTINATION ${CMAKE_INSTALL_BINDIR}
-)
-
-configure_file(config_gotthard.txt ${CMAKE_BINARY_DIR}/bin/config_gotthard.txt COPYONLY)