Merge branch 'test' into developer

Mythen3

.clang-format

@@ -4,3 +4,4 @@ IndentWidth: 4
 UseTab: Never
 ColumnLimit: 80
 AlignConsecutiveAssignments: false 
+AlignConsecutiveMacros: true

CMakeLists.txt

@@ -45,8 +45,34 @@ option(SLS_USE_CTBGUI "ctb GUI" OFF)
 option(SLS_BUILD_DOCS "docs" OFF)
 option(SLS_BUILD_EXAMPLES "examples" OFF)
 option(SLS_TUNE_LOCAL "tune to local machine" OFF)
+option(SLS_DEVEL_HEADERS "install headers for devel" OFF)
+
+# set(ClangFormat_BIN_NAME clang-format)
+set(ClangFormat_EXCLUDE_PATTERNS  "build/" 
+                                    "libs/" 
+                                    "slsDetectorCalibration/" 
+                                    "ctbGui/" 
+                                    "manual/"
+                                    "python/"
+                                    "sample/"
+                                    ${CMAKE_BINARY_DIR})
+find_package(ClangFormat)
+
+#Enable LTO if available
+check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
 
 
+# Use ld.gold if it is available and isn't disabled explicitly
+option(SLS_USE_LD_GOLD "Use GNU gold linker" ON)
+if (SLS_USE_LD_GOLD)
+    execute_process(COMMAND ${CMAKE_C_COMPILER} -fuse-ld=gold -Wl,--version ERROR_QUIET OUTPUT_VARIABLE LD_VERSION)
+    if ("${LD_VERSION}" MATCHES "GNU gold")
+        set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fuse-ld=gold")
+        set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fuse-ld=gold")
+    else ()
+        message(WARNING "GNU gold linker isn't available, using the default system linker.")
+    endif ()
+endif ()
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
@@ -203,11 +229,9 @@ if(SLS_BUILD_DOCS)
     add_subdirectory(docs)
 endif(SLS_BUILD_DOCS)
 
-
-
 if(SLS_MASTER_PROJECT)
     # Set install dir CMake packages
-    set(CMAKE_INSTALL_DIR ${CMAKE_INSTALL_DATADIR}/cmake/sls)
+    set(CMAKE_INSTALL_DIR "share/cmake/${PROJECT_NAME}")
     # Set the list of exported targets
     set(PROJECT_LIBRARIES slsSupportLib slsDetectorShared slsReceiverShared)
     # Generate and install package config file and version

cmake/FindClangFormat.cmake

@@ -0,0 +1,39 @@
+# Find Clang format
+if(NOT ClangFormat_BIN_NAME)
+	set(ClangFormat_BIN_NAME clang-format)
+endif()
+
+# if custom path check there first
+if(ClangFormat_ROOT_DIR)
+    find_program(ClangFormat_BIN 
+        NAMES
+        ${ClangFormat_BIN_NAME}
+        PATHS
+        "${ClangFormat_ROOT_DIR}"
+        NO_DEFAULT_PATH)
+endif()
+
+find_program(ClangFormat_BIN NAMES ${ClangFormat_BIN_NAME})
+
+include(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(
+    ClangFormat
+    DEFAULT_MSG 
+    ClangFormat_BIN)
+
+mark_as_advanced(
+    ClangFormat_BIN)
+
+if(ClangFormat_FOUND)
+    exec_program(${ClangFormat_BIN} ${CMAKE_CURRENT_SOURCE_DIR} ARGS --version OUTPUT_VARIABLE CLANG_VERSION_TEXT)
+    string(REGEX MATCH "([0-9]+)\\.[0-9]+\\.[0-9]+" CLANG_VERSION ${CLANG_VERSION_TEXT})
+    if((${CLANG_VERSION} GREATER "9") OR (${CLANG_VERSION} EQUAL "9"))
+        # A CMake script to find all source files and setup clang-format targets for them
+        message(STATUS "found clang-format \"${CLANG_VERSION}\" adding formatting targets")
+        include(clang-format)
+    else()
+        message(STATUS "clang-format version \"${CLANG_VERSION}\" found but need at least 9. Not setting up format targets")
+    endif()
+else()
+    message(STATUS "clang-format not found. Not setting up format targets")
+endif()

cmake/clang-format.cmake

@@ -0,0 +1,47 @@
+# A CMake script to find all source files and setup clang-format targets for them
+
+# Find all source files
+set(ClangFormat_CXX_FILE_EXTENSIONS ${ClangFormat_CXX_FILE_EXTENSIONS} *.cpp *.h *.cxx *.hxx *.hpp *.cc *.ipp *.c)
+file(GLOB_RECURSE ALL_SOURCE_FILES ${ClangFormat_CXX_FILE_EXTENSIONS})
+
+# Don't include some common build folders
+set(ClangFormat_EXCLUDE_PATTERNS ${ClangFormat_EXCLUDE_PATTERNS} "/CMakeFiles/" "cmake")
+
+# get all project files file
+foreach (SOURCE_FILE ${ALL_SOURCE_FILES}) 
+    foreach (EXCLUDE_PATTERN ${ClangFormat_EXCLUDE_PATTERNS})
+        string(FIND ${SOURCE_FILE} ${EXCLUDE_PATTERN} EXCLUDE_FOUND) 
+        if (NOT ${EXCLUDE_FOUND} EQUAL -1) 
+            list(REMOVE_ITEM ALL_SOURCE_FILES ${SOURCE_FILE})
+        endif () 
+    endforeach ()
+endforeach ()
+
+#target for formatting soruce files
+add_custom_target(format
+    COMMENT "Running clang-format to change files"
+    COMMAND ${ClangFormat_BIN}
+    -style=file
+    -i
+    ${ALL_SOURCE_FILES}
+)
+
+
+#target to check format on source files 
+add_custom_target(format-check
+    COMMENT "Checking clang-format changes"
+    # Use ! to negate the result for correct output
+    COMMAND !
+    ${ClangFormat_BIN}
+    -style=file
+    -output-replacements-xml
+    ${ALL_SOURCE_FILES}
+    | grep -q "replacement offset" 
+)
+
+# debug to check which file will be formatted
+add_custom_target(
+    listformatfiles
+    COMMAND
+    echo ${ALL_SOURCE_FILES}
+)

cmake/package_config.cmake

@@ -15,17 +15,20 @@ configure_package_config_file(
 write_basic_package_version_file(
   "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
   VERSION ${PROJECT_VERSION}
-  COMPATIBILITY SameMajorVersion)
+  COMPATIBILITY SameMajorVersion
+)
 
 install(FILES
   "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
   "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
   COMPONENT devel
-  DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
+  DESTINATION ${CMAKE_INSTALL_DIR}
+)
 
 if (PROJECT_LIBRARIES OR PROJECT_STATIC_LIBRARIES)
   install(
     EXPORT "${TARGETS_EXPORT_NAME}"
     FILE ${PROJECT_NAME_LOWER}-targets.cmake
-    DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
+    DESTINATION ${CMAKE_INSTALL_DIR}
+    )
 endif ()

cmk.sh

@@ -11,6 +11,7 @@ PYTHON=0
 TESTS=0
 SIMULATOR=0
 CTBGUI=0
+MANUALS=0
 
 
 CLEAN=0
@@ -19,7 +20,7 @@ CMAKE_PRE=""
 CMAKE_POST=""
 
 usage() { echo -e "
-Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [-h] [-d <HDF5 directory>] [-j] <Number of threads>
+Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [-h] [-d <HDF5 directory>] [-j] <Number of threads>
  -[no option]: only make
  -c: Clean
  -b: Builds/Rebuilds CMake files normal mode
@@ -34,6 +35,7 @@ Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [-h] [-d <HDF5 directory>]
  -j: Number of threads to compile through
  -e: Debug mode
  -i: Builds tests
+ -m: Manuals
 
 Rebuild when you switch to a new build and compile in parallel:
 ./cmk.sh -bj5
@@ -69,7 +71,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bpchd:j:trgeisu" opt ; do
+while getopts ":bpchd:j:trgeisum" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -124,6 +126,10 @@ while getopts ":bpchd:j:trgeisu" opt ; do
 		echo "Compiling Options: Simulator" 
 		SIMULATOR=1
 		;; 
+	m)	
+		echo "Compiling Manuals"
+		MANUALS=1
+		;;
 	u)
 		echo "Compiling Options: Chip Test Gui"
 		CTBGUI=1
@@ -198,6 +204,12 @@ if [ $SIMULATOR -eq 1 ]; then
 	echo "Simulator Option enabled"
 fi 
 
+#Manuals
+if [ $MANUALS -eq 1 ]; then
+	CMAKE_POST+=" -DSLS_BUILD_DOCS=ON "
+	echo "Manuals Option enabled"
+fi 
+
 #Chip Test Gui
 if [ $CTBGUI -eq 1 ]; then
 	CMAKE_POST+=" -DSLS_USE_CTBGUI=ON "
@@ -251,6 +263,9 @@ else
 	make
 fi
 
+if [ $MANUALS -eq 1 ]; then
+	make docs
+fi 
 
 
 

conda-recepie/copy_lib.sh

@@ -5,18 +5,20 @@ mkdir $PREFIX/include
 mkdir $PREFIX/include/slsDetectorPackage
 
 #Shared and static libraries
-cp build/bin/libSlsDetector.so $PREFIX/lib/.
-cp build/bin/libSlsReceiver.so $PREFIX/lib/.
-cp build/bin/libSlsSupport.so $PREFIX/lib/.
+# cp build/bin/libSlsDetector.so $PREFIX/lib/.
+# cp build/bin/libSlsReceiver.so $PREFIX/lib/.
+# cp build/bin/libSlsSupport.so $PREFIX/lib/.
+
+cp build/install/lib/* $PREFIX/lib/
 
 #Binaries
-cp build/bin/sls_detector_acquire $PREFIX/bin/.
-cp build/bin/sls_detector_get $PREFIX/bin/.
-cp build/bin/sls_detector_put $PREFIX/bin/.
-cp build/bin/sls_detector_help $PREFIX/bin/.
-cp build/bin/slsReceiver $PREFIX/bin/.
-cp build/bin/slsMultiReceiver $PREFIX/bin/.
+cp build/install/bin/sls_detector_acquire $PREFIX/bin/.
+cp build/install/bin/sls_detector_get $PREFIX/bin/.
+cp build/install/bin/sls_detector_put $PREFIX/bin/.
+cp build/install/bin/sls_detector_help $PREFIX/bin/.
+cp build/install/bin/slsReceiver $PREFIX/bin/.
+cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
-#Which headers do we need for development??
-cp build/install/include/* $PREFIX/include/slsDetectorPackage/
-# cp include/some_lib.h $PREFIX/include/.
+
+cp build/install/include/* $PREFIX/include/
+cp -r build/install/share/ $PREFIX/share

conda-recepie/meta.yaml

@@ -7,7 +7,7 @@ source:
   - path: ..
 
 build:
-  number: 2
+  number: 0
   binary_relocation: True
   rpaths:
     - lib/
@@ -37,6 +37,7 @@ requirements:
   host:
     - libstdcxx-ng
     - libgcc-ng
+    - zeromq
     - xorg-libx11
     - xorg-libice
     - xorg-libxext
@@ -46,6 +47,7 @@ requirements:
     - xorg-libxfixes
 
   run:
+    - zeromq
     - libstdcxx-ng
     - libgcc-ng 
 

ctbGui/ctbAcquisition.cpp

@@ -1646,10 +1646,13 @@ void ctbAcquisition::update() {
     
    }
 
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dBitOffset = 0;
+  } else {
     try {
       dBitOffset = myDet->getRxDbitOffset().tsquash("Different values");
     } CATCH_DISPLAY ("Could not get receiver dbit offset", "ctbAcquisition::update")
-
+  }
   try {
     tenG = myDet->getTenGiga().tsquash("Different values");
   } CATCH_DISPLAY ("Could not get ten giga enable", "ctbAcquisition::update")
@@ -1735,9 +1738,13 @@ void ctbAcquisition::toggleAcquisition() {
     setDigitalSamples(retval);
   } CATCH_DISPLAY ("Could not get number of digital samples", "ctbAcquisition::toggleAcquisition")
   
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dBitOffset = 0;
+  } else {
   try {
       dBitOffset = myDet->getRxDbitOffset().tsquash("Different values");
     } CATCH_DISPLAY ("Could not get receiver dbit offset", "ctbAcquisition::toggleAcquisition")
+  }
 
   try {
     roMode = static_cast<int>(myDet->getReadoutMode().tsquash("Different values"));
@@ -1974,6 +1981,9 @@ void ctbAcquisition::setDbitEnable(Int_t reg){
 void ctbAcquisition::updateChans() {
 
   // dbit list
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dbitlist.clear();
+  } else {
     try {
       auto retval = myDet->getRxDbitList().tsquash("Different values");
       dbitlist.clear();
@@ -1982,6 +1992,7 @@ void ctbAcquisition::updateChans() {
           dbitlist.push_back(value);
       }
     } CATCH_DISPLAY ("Could not get receiver dbit list.", "ctbAcquisition::updateChans")
+  }
 
   // adc mask
   try { 

ctbGui/ctbSignals.cpp

@@ -374,6 +374,16 @@ void ctbSignals::update() {
 
   } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::update")
 
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    // enable all
+    for (int is=0; is<64; is++) {
+      signals[is]->setDbitList(1);
+    } 
+    eDbitOffset->SetNumber(0);
+  } 
+  
+  // ctb
+  else {
     try {
 
       auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
@@ -400,7 +410,7 @@ void ctbSignals::update() {
       auto val = myDet->getRxDbitOffset().tsquash("Different values");
       eDbitOffset->SetNumber(val);
     } CATCH_DISPLAY ("Could not get receiver dbit offset.", "ctbSignals::update")
-
+  }
 }
 
 

ctbGui/patternGenerator/generate.sh

@@ -21,6 +21,7 @@ if [ -f "$infile" ]
 then
 gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
 echo compiling
+echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
 $exe ; 
 echo cleaning
 rm $exe

docs/CMakeLists.txt

@@ -1,35 +1,36 @@
-find_package(Doxygen)
-find_package(Sphinx)
+find_package(Doxygen REQUIRED)
+find_package(Sphinx REQUIRED)
 
 
-if (DOXYGEN_FOUND AND SPHINX_FOUND)
-    message(${CMAKE_PROJECT_SORURCE_DIR}/slsDetectorSoftware/src)
-    # Utility to generate command line documentation
-    add_executable(gendoc src/gendoc.cpp)
-    # This is a bit hacky, but better than exposing stuff? 
-    target_include_directories(gendoc PRIVATE ${PROJECT_SOURCE_DIR}/slsDetectorSoftware/src)
-    target_link_libraries(gendoc PRIVATE
+
+
+# Utility to generate command line documentation
+add_executable(gendoc src/gendoc.cpp)
+# This is a bit hacky, but better than exposing stuff? 
+target_include_directories(gendoc PRIVATE ${PROJECT_SOURCE_DIR}/slsDetectorSoftware/src)
+target_link_libraries(gendoc PRIVATE
   slsDetectorShared
-    )
-    set_target_properties(gendoc PROPERTIES 
+)
+set_target_properties(gendoc PROPERTIES 
   RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-    )
+)
 
 
 
 
-    #Doxygen
-    set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in)
-    set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
-    configure_file(${DOXYGEN_IN} ${DOXYGEN_OUT} @ONLY)
+#Doxygen
+set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in)
+set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
+configure_file(${DOXYGEN_IN} ${DOXYGEN_OUT} @ONLY)
 
-    #Sphinx
-    set(SPHINX_SOURCE ${CMAKE_CURRENT_SOURCE_DIR}/src)
-    set(SPHINX_BUILD ${CMAKE_CURRENT_BINARY_DIR})
+#Sphinx
+set(SPHINX_SOURCE ${CMAKE_CURRENT_SOURCE_DIR}/src)
+set(SPHINX_BUILD ${CMAKE_CURRENT_BINARY_DIR})
 
-    set(SPHINX_SOURCE_FILES
+set(SPHINX_SOURCE_FILES
   src/commandline.rst
   src/container_utils.rst
+  src/consuming.rst
   src/dependencies.rst
   src/detector.rst
   src/index.rst
@@ -41,20 +42,21 @@ if (DOXYGEN_FOUND AND SPHINX_FOUND)
   src/result.rst
   src/type_traits.rst
   src/ToString.rst
+  src/examples.rst
   
-    )
+)
 
-    foreach(filename ${SPHINX_SOURCE_FILES})
-      configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${filename} 
+foreach(filename ${SPHINX_SOURCE_FILES})
+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${filename} 
               "${SPHINX_BUILD}/${filename}")
-    endforeach(filename ${SPHINX_SOURCE_FILES})
+endforeach(filename ${SPHINX_SOURCE_FILES})
 
-    configure_file(
+configure_file(
   "${CMAKE_CURRENT_SOURCE_DIR}/conf.py.in"
   "${SPHINX_BUILD}/conf.py"
   @ONLY)
 
-    add_custom_target(docs
+add_custom_target(docs
               gendoc
               COMMAND ${DOXYGEN_EXECUTABLE} ${DOXYGEN_OUT}
               COMMAND ${SPHINX_EXECUTABLE} -a -b html
@@ -64,6 +66,4 @@ if (DOXYGEN_FOUND AND SPHINX_FOUND)
               ${SPHINX_BUILD}/html
               COMMENT "Generating documentation with Sphinx")
 
-else (DOXYGEN_FOUND AND SPHINX_FOUND)
-  message("Doxygen and Sphinx are needed to build documentation")
-endif (DOXYGEN_FOUND AND SPHINX_FOUND)
+

docs/src/consuming.rst

@@ -0,0 +1,116 @@
+Consuming slsDetectorPackage
+===============================
+
+Depending on how you want to build your integration with 
+slsDetectorPackage there are a few different ways to 
+consume our package. The recommended way is to use one of the 
+CMake approaches. 
+
+
+
+CMake: slsDetectorPackage as submodule in your project
+---------------------------------------
+
+If you are using CMake to build your integration and want to build everything
+in one go, we support adding slsDetectorPackage as a subfolder in your cmake project. 
+
+A minimal CMakeLists.txt could look like this: 
+
+.. code-block:: cmake
+
+    project(myDetectorIntegration)
+    cmake_minimum_required(VERSION 3.12)
+    add_subdirectory(slsDetectorPackage)
+
+    #Add your executable
+    add_executable(example main.cpp)
+    target_compile_features(example PRIVATE cxx_std_11)
+
+    #Link towards slsDetectorShared
+    target_link_libraries(example slsDetectorShared)
+
+A fully working example can be found at:
+
+https://github.com/slsdetectorgroup/cmake-subfolder-example
+
+
+CMake: find_package(slsDetectorPackage)
+------------------------------------------
+
+If you have compiled and installed slsDetectorPackage we also support
+find_package in CMake. If installed in a system wide location no path
+should be needed, otherwise specify cmake prefix path. 
+
+.. code-block:: cmake 
+
+    cmake_minimum_required(VERSION 3.12)
+    project(myintegration)
+
+    find_package(slsDetectorPackage 5.0 REQUIRED)
+    add_executable(example main.cpp)
+    target_link_libraries(example slsDetectorShared)
+
+
+Then assuming the slsDetectorPackage is installed in /path/to/sls/install
+you should be able to configure and build your project in this way. 
+
+.. code-block:: bash
+
+    cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=/path/to/sls/install
+    make
+
+
+A minimal example is available at: https://github.com/slsdetectorgroup/minimal-cmake
+
+
+CMake: find_package and conda
+----------------------------------
+
+.. note::
+
+    conda can also be used for installing dependencies such as zmq, Qt4 etc. 
+
+find_package(slsDetectorPackage) also works if you have installed slsDetectorPackage using conda.
+The only difference is that you point CMake to $CONDA_PREFIX 
+
+
+.. code-block:: bash
+
+    #assuming myenv contains slsdetlib
+    conda activate myenv
+    cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
+    make
+
+Depending on your system compiler you might also have to install gxx_linux-64 to compiled.
+
+No tools minimal approach
+-----------------------------
+
+While not recommended it is still possible to specify the include and library paths
+manually when invoking g++. This can sometimes be handy for a quick try. 
+
+.. code-block:: cpp
+
+    #include "Detector.h"
+    #include <iostream>
+    int main(){
+
+        sls::Detector det;
+
+        //Get all values and print them
+        std::cout << "Hostname: " << det.getHostname() << "\n";
+        std::cout << "Type: " << det.getDetectorType() << "\n";
+        std::cout << "Udp ip: " << det.getSourceUDPIP() << "\n";
+
+
+        //Get mac addr 
+        const int module = 0;
+        auto mac = det.getSourceUDPMAC()[module];
+        std::cout << "Mac addr of module "<< module <<  " is " <<  mac.str() << '\n'; 
+
+    }     
+
+
+.. code-block:: bash
+
+    g++ -I/install/path/include/  -L/install/path/lib64/ myapp.cpp -lSlsDetector -lSlsSupport -Wl,-rpath=../install/path/lib64

docs/src/dependencies.rst

@@ -13,7 +13,7 @@ To use the basic building blocks, meaning sls_detector_get/put and
 the shared libraries these are needed: 
 
  * Linux, preferably recent kernel (currently no cross platform support)
- * CMake > 3.9 
+ * CMake > 3.12 
  * C++11 compatible compiler. (We test with gcc and clang)
  * ZeroMQ version 4
 
@@ -24,7 +24,7 @@ GUI
 The GUI is currently using Qt4 but watch out for an upgrade to 5. 
 
  * Qt 4.8
- * Qwt 6
+ * Qwt 6.1
 
 -----------------------
 Python bindings

docs/src/examples.rst

@@ -0,0 +1,115 @@
+
+
+
+Examples
+===========
+
+Setup 
+------------
+
+The examples here assume that you have compiled and installed slsDetectorPackage
+to ~/sls/install and that the option for SLS_USE_SIMULATOR was enabled. This also builds
+the virtual detector servers that we will be using for testing. 
+
+We also add ~/sls/detector/install/bin to the path for convenience. 
+
+Compile examples
+-------------------
+
+The source code of the examples is available at:
+https://github.com/slsdetectorgroup/api-examples
+
+
+.. code-block:: bash
+
+    git clone https://github.com/slsdetectorgroup/api-examples.git
+    mkdir build && cd build
+    cmake ../api-examples -DCMAKE_PREFIX_PATH=~/sls/detector/install
+    make
+
+Below follows a short description of what is included in the examples.
+
+
+Running a config file [e1]
+-----------------------------
+
+
+.. code-block:: cpp
+
+    #include "Detector.h"
+    ...
+    sls::Detector det;
+    det.loadConfig("path/to/config/file.config");
+
+
+
+To configure the connection between PC and detector the easiest 
+is to run a config file. For this example we first launch a virtual Jungfrau server and
+then set up the detector. 
+
+**Launch a virtual detector server**
+
+.. code-block:: bash
+
+    jungfrauDetectorServer_virtual
+
+This launches a virtual Jungfrau detector server. As default is uses port 1952 and 1953
+for communication over TCP. Most commands go on 1952 and only stop and status on 1953. 
+
+**Run example to configure**
+
+.. code-block:: bash
+
+    ./e1-config one_det_no_receiver.config
+    - 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0_sls_0
+    - 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0
+    - 12:01:06.372 INFO: Shared memory created /slsDetectorPackage_multi_0
+    - 12:01:06.376 INFO: Loading configuration file: one_det_no_receiver.config
+    - 12:01:06.376 INFO: Adding detector localhost
+    - 12:01:06.377 INFO: Shared memory created /slsDetectorPackage_multi_0_sls_0
+    - 12:01:06.377 INFO: Checking Detector Version Compatibility
+    - 12:01:06.378 INFO: Detector connecting - updating!
+    hostname [localhost]
+
+
+    Jungfrau detector with 1 modules configured
+
+
+Using the return type sls::Result [e2]
+-----------------------------------------
+
+Since many our detectors have multiple modules we cannot return
+a single value when reading from the Detector. Hostname, Ip and also
+for example exposure time can differ between modules. 
+
+Therefore we return Result<T> which is a thin wrapper around
+std::vector. 
+
+.. code-block:: cpp
+
+    sls::Result<int> res1{1, 1, 1};
+    std::cout << "res1: " << res1 << '\n';
+    res1.squash();
+    res1.squash(-1);
+
+
+
+Setting exposure time [e3]
+-----------------------------------------
+
+For setting times, like exposure time, period, delay etc. 
+we use std::chrono::duration. 
+
+Example 3 shows how to set and read exposure time as well
+as converting to floating point. 
+
+.. code-block:: cpp
+
+    #include "Detector.h"
+    #include <chrono>
+    ...
+    std::chrono::microseconds t0{500};
+    det.setExptime(t0);
+
+
+

docs/src/gendoc.cpp

@@ -9,7 +9,6 @@
 #include <string>
 #include <vector>
 
-
 #include "CmdProxy.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
@@ -52,5 +51,4 @@ int main() {
         auto help = replace_all(tmp, "\n\t", "\n\t\t");
         fs << '\t' << cmd << usage << help << "\n";
     }
-
 }

docs/src/index.rst

@@ -6,12 +6,18 @@
 Welcome to slsDetectorPackage's documentation!
 ==============================================
 
+.. note :: 
+
+    This is the documentation for the latest development version of slsDetectorPackage
+    For documentation on current and previous releases visit the official page: https://www.psi.ch/en/detectors/documentation
+
 .. toctree::
     :maxdepth: 1
     :caption: Installation:
 
     installation
     dependencies
+    consuming
    
 .. toctree::
     :caption: C++ API
@@ -20,6 +26,7 @@ Welcome to slsDetectorPackage's documentation!
     detector
     result
     receiver
+    examples
 
 .. toctree::
     :caption: Python API

docs/src/installation.rst

@@ -2,4 +2,68 @@
 Installation
 ==============================================
 
-get the source etc.
+Build from source using CMake
+---------------------------------
+
+.. note :: 
+
+    The default branch of our git repository is developer. It contains the 
+    latest development version. It is expected to compile and work but 
+    features might be added or tweaked. In some cases the API might also change
+    without being communicated. If absolute stability of the API is needed please
+    use one of the release versions. 
+
+.. code-block:: bash
+
+    git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git
+    mkdir build && cd build
+    cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
+    make -j12
+    make install
+
+Install binaries using conda
+--------------------------------
+
+.. code-block:: bash
+
+    #Add channels for dependencies and our library
+    conda config --add channels conda-forge
+    conda config --add channels slsdetectorgroup
+    conda config --set channel_priority strict
+
+    #cerate an environment with our library, then activate
+    conda create -n myenv slsdetlib=2020.03.18.dev2
+    codna activate myenv
+
+    #ready to use
+    sls_detector_get exptime
+    etc ...
+
+
+
+Build from source on old distributions
+-----------------------------------------
+
+If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
+it's possible to install a newer gcc using conda and build the slsDetectorPackage
+using this compiler
+
+.. code-block:: bash
+
+    #Create an environment with the dependencies
+    conda create -n myenv gxx_linux-64 cmake zmq
+    conda activate myenv
+    cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
+    make -j12
+
+
+Build this documentation
+-------------------------------
+
+The documentation for the slsDetectorPackage is build using a combination 
+of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
+is to use conda 
+
+.. code-block:: bash
+
+    conda create -n myenv python sphinx sphinx_rtd_theme

docs/src/pydetector.rst

@@ -1,9 +1,9 @@
 Detector
 =====================================================
 
-.. py:currentmodule:: sls_detector
+.. py:currentmodule:: slsdet
 
-.. autoclass:: ExperimentalDetector
+.. autoclass:: Detector
     :members:  
     :undoc-members:
     :show-inheritance:

examples/gotthard_II.config

@@ -0,0 +1,29 @@
+hostname strip3
+
+udp_srcip 10.1.1.184
+udp_dstip 10.1.1.107
+
+udp_dstport2 50084
+udp_srcip2 10.1.1.185
+udp_dstip2 10.1.1.107
+
+rx_hostname pc12365:1954
+#udp_dstmac 3c:fd:fe:d2:a4:25
+fpath  /tmp
+fname run
+fwrite 0
+
+bursts 10
+frames 2700
+burstperiod 100ms
+
+numinterfaces 2
+veto 1
+
+#fixing data looks
+# Sampling pipeline 1 clk
+reg 0x120 0x00000010
+clkphase 1 135 deg
+
+
+

examples/jctb_moench03_T1.config

@@ -430,13 +430,13 @@ patwaittime2 0
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-#0:udp_dstip 10.1.1.102
-0:udp_dstip 129.129.202.136
+0:udp_dstip 10.1.1.102
+#0:udp_dstip 129.129.202.136
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-#0:udp_srcip 10.1.1.19
-0:udp_srcip 129.129.202.13
+0:udp_srcip 10.1.1.19
+#0:udp_srcip 129.129.202.13
 
 0:udp_dstport 33410
 #############################################
@@ -457,7 +457,7 @@ patwaittime2 0
 ############################################
 rx_hostname mpc2011
 
-tengiga 0
+tengiga 1
 
 rx_datastream 1
 rx_readfreq 1

examples/moench03_T1.config

@@ -1,11 +1,15 @@
-#initialchecks 0
+initialchecks 0
 #############################################
 ### edit with hostname or IP address of your detector 
 ############################################
 hostname bchip181+
 
+#############################################
+### edit with hostname or 1Gbs IP address of your server
+############################################
+rx_hostname mpc2011
 
-
+rx_tcpport 1954
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
@@ -14,24 +18,20 @@ udp_dstip 10.1.1.102
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
 udp_srcip 10.1.1.19
-udp_dstport 33410
+udp_dstport 32411
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-#rx_zmqip 10.1.1.102
-#rx_zmqport 30001
+rx_zmqip 10.1.1.102
+rx_zmqport 50003
 #############################################
 ### edit with 1 Gbs IP of PC where you will run the GUI
 ############################################
-#zmqip 129.129.202.136
-#zmqport 40001
+zmqip 129.129.202.136
+zmqport 50001
 
 
-#############################################
-### edit with hostname or 1Gbs IP address of your server
-############################################
-rx_hostname mpc2011
 
 
 tengiga 1
@@ -39,8 +39,8 @@ rx_datastream 1
 
 
 
-frames 1
-period 0.001
+frames 100000
+period 0.0006
 #############################################
 ### edit with directory you want to write to
 ############################################
@@ -48,8 +48,8 @@ fpath /mnt/moench_data/scratch/
 fwrite 0
 rx_datastream 1
 
-rx_jsonpara frameMode newpedestal
-rx_jsonpara detectorMode analog
+rx_jsonpara frameMode frame
+rx_jsonpara detectorMode counting
 rx_discardpolicy discardpartial
 
 
@@ -58,4 +58,6 @@ adcpipeline 15
 powerchip 1
 vhighvoltage 90
 
-adcreg 14 40
+#adcreg 0x14 0x40
+
+

integrationTests/test-eigerIntegration.cpp

@@ -1,5 +1,5 @@
-#include "catch.hpp"
 #include "DetectorImpl.h"
+#include "catch.hpp"
 #include "string_utils.h"
 #include "tests/globals.h"
 #include <iostream>

integrationTests/test-integrationDectector.cpp

@@ -2,9 +2,9 @@
 #include "catch.hpp"
 
 #include "ClientSocket.h"
-#include "logger.h"
 #include "DetectorImpl.h"
 #include "Module.h"
+#include "logger.h"
 #include "sls_detector_defs.h"
 
 #include "Timer.h"
@@ -79,7 +79,6 @@ TEST_CASE("Set control port then create a new object with this control port",
     d.freeSharedMemory();
 }
 
-
 TEST_CASE("single EIGER detector no receiver basic set and get",
           "[.integration][eiger]") {
     // TODO! this test should take command line arguments for config
@@ -130,8 +129,6 @@ TEST_CASE("single EIGER detector no receiver basic set and get",
     d.freeSharedMemory();
 }
 
-
-
 TEST_CASE("Locking mechanism and last ip", "[.integration][.single]") {
     Module d(test::type);
     d.setHostname(test::hostname);
@@ -154,13 +151,12 @@ TEST_CASE("Locking mechanism and last ip", "[.integration][.single]") {
     d.freeSharedMemory();
 }
 
-TEST_CASE("Set settings", "[.integration][.single]"){
+TEST_CASE("Set settings", "[.integration][.single]") {
     Module d(test::type);
     d.setHostname(test::hostname);
     CHECK(d.setSettings(defs::STANDARD) == defs::STANDARD);
 }
 
-
 TEST_CASE("Timer functions", "[.integration][cli]") {
     // FRAME_NUMBER, /**< number of real time frames: total number of
     // acquisitions is number or frames*number of triggers */ ACQUISITION_TIME,
@@ -204,8 +200,7 @@ TEST_CASE("Timer functions", "[.integration][cli]") {
     if (test::type != dt::EIGER) {
         auto delay = 10000;
         d.setDelayAfterTrigger(delay);
-        CHECK(d.getDelayAfterTrigger() ==
-              delay);
+        CHECK(d.getDelayAfterTrigger() == delay);
     }
 
     auto triggers = 2;
@@ -221,7 +216,6 @@ TEST_CASE("Timer functions", "[.integration][cli]") {
     d.startAndReadAll();
 
     d.freeSharedMemory();
-
 }
 
 // TEST_CASE("Aquire", "[.integration][eiger]"){
@@ -382,8 +376,8 @@ TEST_CASE("Chiptestboard Loading Patterns", "[.ctbintegration]") {
     }
 }
 
-
-TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert", "[.ctbintegration][dbit]") {
+TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
+          "[.ctbintegration][dbit]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
@@ -403,7 +397,7 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert", "[.ctbintegrat
 
     // dbit list
 
-    std::vector <int> list = m.getReceiverDbitList();
+    std::vector<int> list = m.getReceiverDbitList();
     list.clear();
     for (int i = 0; i < 10; ++i)
         list.push_back(i);
@@ -450,17 +444,20 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert", "[.ctbintegrat
     m.setExternalSampling(1);
     CHECK(m.getExternalSampling() == 1);
     CHECK(m.readRegister(0x7b) == 0x1003E);
-    
 }
 
-TEST_CASE("Eiger or Jungfrau startingfnum", "[.eigerintegration][.jungfrauintegration][startingfnum]") {
+TEST_CASE("Eiger or Jungfrau startingfnum",
+          "[.eigerintegration][.jungfrauintegration][startingfnum]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
     DetectorImpl m(0);
 
     // ensure ctb detector type, hostname and online
-    REQUIRE(((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER) || (m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::JUNGFRAU)));
+    REQUIRE(
+        ((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER) ||
+         (m.getDetectorTypeAsEnum() ==
+          slsDetectorDefs::detectorType::JUNGFRAU)));
     REQUIRE(m.getHostname() == c.hostname);
 
     CHECK(m.setNumberOfFrames(1) == 1);
@@ -498,7 +495,8 @@ TEST_CASE("Eiger readnlines", "[.eigerintegration][readnlines]") {
     DetectorImpl m(0);
 
     // ensure detector type, hostname
-    REQUIRE((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER));
+    REQUIRE(
+        (m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER));
     REQUIRE(m.getHostname() == c.hostname);
 
     m.setDynamicRange(16);

integrationTests/test-integrationMulti.cpp

@@ -1,5 +1,5 @@
-#include "catch.hpp"
 #include "DetectorImpl.h"
+#include "catch.hpp"
 #include "string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
@@ -24,8 +24,6 @@ TEST_CASE("Initialize a multi detector", "[.integration][.multi]") {
     d.freeSharedMemory();
 }
 
-
-
 TEST_CASE("Set and read timers", "[.integration][.multi]") {
 
     DetectorImpl d(0, true, true);
@@ -57,7 +55,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
     // PROGRESS, /**< fraction of measurement elapsed - only get! */
     // MEASUREMENTS_NUMBER,
 
-
     // FRAMES_FROM_START,
     // FRAMES_FROM_START_PG,
     // SAMPLES,
@@ -78,7 +75,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
         CHECK(d.setSubFrameExposureDeadTime(-1) == Approx(subframe_deadtime));
     }
 
-    
     if (test::type == dt::EIGER) {
         // 32bit is needed for subframe exposure
         d.setDynamicRange(32);

python/api-tests/test_detector.py

@@ -0,0 +1,82 @@
+import pytest
+import datetime as dt
+from slsdet import Detector, timingMode, detectorType
+
+not_eiger = pytest.mark.skipif(
+    Detector().type == detectorType.EIGER, reason="Does not work for eiger"
+)
+
+
+@pytest.fixture
+def det():
+    from slsdet import Detector
+
+    return Detector()
+
+
+def test_frames(det):
+    for n in [1, 100, 3245, 10000]:
+        det.frames = n
+        assert det.frames == n
+    det.frames = 1
+
+
+def test_triggers(det):
+    for n in [1, 100, 3245, 10000]:
+        det.triggers = n
+        assert det.triggers == n
+    det.triggers = 1
+
+
+def test_exptime(det):
+    det.exptime = 1
+    assert det.exptime == 1
+    det.exptime = dt.timedelta(milliseconds=10)
+    assert det.exptime == 0.01
+    det.exptime = 1
+
+
+def test_period(det):
+    det.period = 3.2
+    assert det.period == 3.2
+
+    p = dt.timedelta(microseconds=1020)
+    det.period = p
+    assert det.period == 0.001020
+    r = det.getPeriod()
+    assert r[0] == p
+    det.period = 0
+    assert det.period == 0
+
+
+def test_lock(det):
+    for l in [True, False]:
+        det.lock = l
+        assert det.lock == l
+
+
+def test_timing(det):
+    # auto and trigger is available for all det
+    for m in [timingMode.TRIGGER_EXPOSURE, timingMode.AUTO_TIMING]:
+        det.timing = m
+        assert det.timing == m
+
+@not_eiger
+def test_delay(det):
+    det.delay = 1
+    assert det.delay == 1
+
+    t  = dt.timedelta(microseconds=1)
+    det.delay = t
+    assert det.delay == t.total_seconds()
+
+    r = det.getDelayAfterTrigger()[0]
+    assert r == t
+
+    det.delay = 0
+    assert det.delay == 0
+
+
+@not_eiger
+def test_delayl(det):
+    assert det.delayl == 0

python/api-tests/test_jungfrau.py

@@ -0,0 +1,89 @@
+import pytest
+import datetime as dt
+from slsdet import Detector, detectorType
+
+"""
+These tests are designed to work the API and catch
+any changes in behavior or naming. Tests are expected
+to pass with a virtual detector or a real one
+
+"""
+
+
+@pytest.fixture
+def jf():
+    from slsdet import Jungfrau
+    return Jungfrau()
+
+
+jungfrautest = pytest.mark.skipif(
+    Detector().type != detectorType.JUNGFRAU, reason="Only valid for Jungfrau"
+)
+
+
+@jungfrautest
+def test_storagecells(jf):
+    for i in range(16):
+        jf.storagecells = i
+        assert jf.storagecells == i
+    jf.storagecells = 0  # default
+
+@jungfrautest
+def test_storagecell_start(jf):
+    for i in range(16):
+        jf.storagecell_start = i
+        assert jf.storagecell_start == i
+    jf.storagecells = 15  # default
+
+@jungfrautest
+def test_storagecell_delay(jf):
+    for t in [0.001, 0.0002, 0.0013]:
+        jf.storagecell_delay = t
+        assert jf.storagecell_delay == t
+    jf.storagecell_delay = 0  # default
+
+@jungfrautest
+def test_temp_event(jf):
+    # hard to test with virtual server
+    assert jf.temp_event == 0
+
+@jungfrautest
+def test_temp_threshold(jf):
+    for th in [0, 10, 43, 72]:
+        jf.temp_threshold = th
+        assert jf.temp_threshold == th
+    jf.temp_threshold = 0
+
+@jungfrautest
+def test_auto_comp_disable(jf):
+    for v in [True, False]:
+        jf.auto_comp_disable = v
+        assert jf.auto_comp_disable == v
+
+@jungfrautest
+def test_numinterfaces(jf):
+    for n in [2, 1]:
+        jf.numinterfaces = n
+        assert jf.numinterfaces == n
+
+@jungfrautest
+def test_dr(jf):
+    assert jf.dr == 16
+
+@jungfrautest
+def test_temp_control(jf):
+    for v in [True, False]:
+        jf.temp_control = v
+        assert jf.temp_control == v
+
+@jungfrautest
+def test_startingfnum(jf):
+    for n in [10, 127, 43321, 1]:
+        jf.startingfnum = n
+        assert jf.startingfnum == n
+
+@jungfrautest
+def test_selinterface(jf):
+    for i in [1, 0]:
+        jf.selinterface = i
+        assert jf.selinterface == i

python/scripts/cmd_python.py

@@ -15,7 +15,7 @@ pycmd += ['vrf', 'vtr', 'vrs', 'vtgstv', 'vsvn', 'vtrim',
 'vpreamp', 'vref_comp', 'vref_comp_fe vref_ds', 'vref_h_adc', 
 'vref_l_adc', 'iodelay', 'list', 'vref_ds', 'vis', 'vpl', 
 'vref_comp_fe', 'vph', 'vout_cm', 'vcp', 'vcn', 'vcmp_ll', 'vcmp_lr'
-, 'vcmp_rl', 'vcmp_rr']
+, 'vcmp_rl', 'vcmp_rr', 'daclist', 'dacvalues', 'vcal', 'vcas']
 
 missing = []
 for c in cmd:

python/scripts/generate_enums.py

@@ -11,6 +11,10 @@ import subprocess
 
 from parse import remove_comments
 
+def single_line_enum(line):
+    sub = line[line.find('{')+1:line.find('}')]
+    return sub.strip().split(',')
+
 def extract_enums(lines):
     line_iter = iter(lines)
     enums = {}
@@ -18,8 +22,15 @@ def extract_enums(lines):
         m = re.search("(?<=enum )\w+(?= {)", line)
         if m:
             enum_name = m.group()
-            # print(enum_name)
+            print(enum_name)
+            # print(line)
             fields = []
+
+            #deal with single line enums
+            if '};' in line:
+                fields = single_line_enum(line)
+            else:
+                #deal with multi line enums
                 while True:
                     l  = next(line_iter)
                     if '};' in l:

python/scripts/generate_functions.py

@@ -18,7 +18,13 @@ fpath = "../../slsDetectorSoftware/src/Detector.cpp"
 
 
 parser = argparse.ArgumentParser()
-parser.add_argument("-p", "--build_path", help="Path to the build database", type = str, default=default_build_path)
+parser.add_argument(
+    "-p",
+    "--build_path",
+    help="Path to the build database",
+    type=str,
+    default=default_build_path,
+)
 cargs = parser.parse_args()
 
 db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
@@ -26,7 +32,7 @@ index = cindex.Index.create()
 args = db.getCompileCommands(fpath)
 args = list(iter(args).__next__().arguments)[0:-1]
 args = args + "-x c++ --std=c++11".split()
-syspath = system_include_paths('clang++')
+syspath = system_include_paths("clang++")
 incargs = ["-I" + inc for inc in syspath]
 args = args + incargs
 
@@ -39,6 +45,9 @@ ag = []
 
 lines = []
 
+ag2 = []
+
+cn = []
 
 def get_arguments(node):
     args = [a.type.spelling for a in node.get_arguments()]
@@ -46,9 +55,25 @@ def get_arguments(node):
         "py::arg() = Positions{}" if item == "sls::Positions" else "py::arg()"
         for item in args
     ]
-    args = ', '.join(args)
+    args = ", ".join(args)
     if args:
-        args = f', {args}'
+        args = f", {args}"
+    return args
+
+
+def get_fdec(node):
+    args = [a.type.spelling for a in node.get_arguments()]
+    if node.result_type.spelling:
+        return_type = node.result_type.spelling
+    else:
+        return_type = 'void'
+    
+    if node.is_const_method():
+        const = 'const'
+    else:
+        const = ''
+    args = ", ".join(args)
+    args = f'({return_type}(Detector::*)({args}){const})'
     return args
 
 
@@ -62,23 +87,37 @@ def visit(node):
                 ):
                     m.append(child)
                     args = get_arguments(child)
-                    lines.append(f'.def(\"{child.spelling}\", &Detector::{child.spelling}{args})')
+                    fs = get_fdec(child)
+                    lines.append(
+                        f'.def("{child.spelling}",{fs} &Detector::{child.spelling}{args})'
+                    )
+                    cn.append(child)
     for child in node.get_children():
         visit(child)
 
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::string &, Positions)) &
+        #          Detector::setRxHostname,
+        #      py::arg(), py::arg() = Positions{})
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::vector<std::string> &)) &
+        #          Detector::setRxHostname,
+        #      py::arg())
+
 
 visit(tu.cursor)
 
 
-with open('../src/detector_in.cpp') as f:
+with open("../src/detector_in.cpp") as f:
     data = f.read()
-s = ''.join(lines)
-s += ';'
-text = data.replace('[[FUNCTIONS]]', s)
-warning = '/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n'
-with open('../src/detector.cpp', 'w') as f:
+s = "".join(lines)
+s += ";"
+text = data.replace("[[FUNCTIONS]]", s)
+warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
+with open("../src/detector.cpp", "w") as f:
     f.write(warning)
     f.write(text)
 
 # run clang format on the output
-subprocess.run(['clang-format', '../src/detector.cpp', '-i'])
+subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
+

python/setup.py

@@ -45,7 +45,7 @@ ext_modules = [
             # get_pybind_include(),
             # get_pybind_include(user=True),
             os.path.join('../libs/pybind11/include'),
-            os.path.join(get_conda_path(), 'include/slsDetectorPackage'),
+            os.path.join(get_conda_path(), 'include'),
 
         ],
         libraries=['SlsDetector', 'SlsReceiver', 'zmq'],

python/slsdet/detector.py

@@ -1,23 +1,29 @@
 from _slsdet import CppDetectorApi
 from _slsdet import slsDetectorDefs
+from _slsdet import IpAddr, MacAddr
 
 runStatus = slsDetectorDefs.runStatus
+timingMode = slsDetectorDefs.timingMode
 speedLevel = slsDetectorDefs.speedLevel
 dacIndex = slsDetectorDefs.dacIndex
+detectorType = slsDetectorDefs.detectorType
 
 from .utils import element_if_equal, all_equal, get_set_bits, list_to_bitmask
-from .utils import Geometry, to_geo, element
+from .utils import Geometry, to_geo, element, reduce_time, is_iterable
+from . import utils as ut
 from .registers import Register, Adc_register
 import datetime as dt
 
 from functools import wraps
 from collections import namedtuple
+import socket
+
 
 def freeze(cls):
     cls._frozen = False
 
     def frozensetattr(self, key, value):
-        if self._frozen and not hasattr(self, key):
+        if self._frozen and not key in dir(self):
             raise AttributeError(
                 "Class {} is frozen. Cannot set {} = {}".format(
                     cls.__name__, key, value
@@ -57,23 +63,16 @@ class Detector(CppDetectorApi):
         self._register = Register(self)
         self._adc_register = Adc_register(self)
 
-
-
     # CONFIGURATION
     def __len__(self):
         return self.size()
 
     def __repr__(self):
-            return '{}(id = {})'.format(self.__class__.__name__,
-                                        self.getShmId())
-
+        return "{}(id = {})".format(self.__class__.__name__, self.getShmId())
 
     def free(self):
         self.freeSharedMemory()
 
-
-
-
     @property
     def config(self):
         return NotImplementedError("config is set only")
@@ -109,7 +108,7 @@ class Detector(CppDetectorApi):
 
     @property
     def server_version(self):
-        #TODO! handle hex print
+        # TODO! handle hex print
         return element_if_equal(self.getDetectorServerVersion())
 
     @property
@@ -161,58 +160,48 @@ class Detector(CppDetectorApi):
     def frames(self, n_frames):
         self.setNumberOfFrames(n_frames)
 
+    @property
+    def triggers(self):
+        return element_if_equal(self.getNumberOfTriggers())
+
+    @triggers.setter
+    def triggers(self, n_triggers):
+        self.setNumberOfTriggers(n_triggers)
 
     @property
     def exptime(self):
+        if self.type == detectorType.MYTHEN3:
+            res = self.getExptimeForAllGates()
+        else:
             res = self.getExptime()
-        return element_if_equal([it.total_seconds() for it in res])
+        return reduce_time(res)
 
     @exptime.setter
     def exptime(self, t):
-        if isinstance(t, dt.timedelta):
-            self.setExptime(t)
-        else:
-            self.setExptime(dt.timedelta(seconds=t))
-
-    @property
-    def subexptime(self):
-        res = self.getSubExptime()
-        return element_if_equal([it.total_seconds() for it in res])
-
-    @subexptime.setter
-    def subexptime(self, t):
-        if isinstance(t, dt.timedelta):
-            self.setSubExptime(t)
-        else:
-            self.setSubExptime(dt.timedelta(seconds=t))
-
-    @property
-    def subdeadtime(self):
-        res = self.getSubDeadTime()
-        return element_if_equal([it.total_seconds() for it in res])
-
-    @subdeadtime.setter
-    def subdeadtime(self, t):
-        if isinstance(t, dt.timedelta):
-            self.setSubDeadTime(t)
-        else:
-            self.setSubDeadTime(dt.timedelta(seconds=t))
-
+        self.setExptime(ut.make_timedelta(t))
 
     @property
     def period(self):
         res = self.getPeriod()
-        return element_if_equal([it.total_seconds() for it in res])
+        return reduce_time(res)
 
     @period.setter
     def period(self, t):
-        if isinstance(t, dt.timedelta):
-            self.setPeriod(t)
-        else:
-            self.setPeriod(dt.timedelta(seconds=t))
+        self.setPeriod(ut.make_timedelta(t))
 
+    @property
+    @element
+    def delay(self):
+        return ut.reduce_time(self.getDelayAfterTrigger())
 
+    @delay.setter
+    def delay(self, t):
+        self.setDelayAfterTrigger(ut.make_timedelta(t))
 
+    @property
+    @element
+    def delayl(self):
+        return ut.reduce_time(self.getDelayAfterTriggerLeft())
 
    
     # Time
@@ -220,7 +209,6 @@ class Detector(CppDetectorApi):
     def rx_framescaught(self):
         return element_if_equal(self.getFramesCaught())
 
-
     @property
     def startingfnum(self):
         return element_if_equal(self.getStartingFrameNumber())
@@ -228,10 +216,7 @@ class Detector(CppDetectorApi):
     @startingfnum.setter
     def startingfnum(self, value):
         self.setStartingFrameNumber(value)
-
-
-
-     #TODO! add txdelay
+    # TODO! add txdelay
 
     @property
     def use_receiver(self):
@@ -297,9 +282,16 @@ class Detector(CppDetectorApi):
     @property
     def rx_lastclient(self):
         return element_if_equal(self.getRxLastClientIP())
+    # FILE
 
+    @property
+    @element
+    def numinterfaces(self):
+        return self.getNumberofUDPInterfaces()
 
-    #FILE
+    @numinterfaces.setter
+    def numinterfaces(self, value):
+        self.setNumberofUDPInterfaces(value)
 
     @property
     def fformat(self):
@@ -415,14 +407,15 @@ class Detector(CppDetectorApi):
     def zmqip(self, ip):
         self.setClientZmqIp(ip)
 
-
     @property
     def udp_dstip(self):
         return element_if_equal(self.getDestinationUDPIP())
 
     @udp_dstip.setter
     def udp_dstip(self, ip):
-        self.getDestinationUDPIP(ip)
+        if ip == "auto":
+            ip = socket.gethostbyname(self.rx_hostname)
+        self.setDestinationUDPIP(IpAddr(ip))
 
     @property
     def udp_dstip2(self):
@@ -430,7 +423,9 @@ class Detector(CppDetectorApi):
 
     @udp_dstip2.setter
     def udp_dstip2(self, ip):
-        self.getDestinationUDPIP2(ip)
+        if ip == "auto":
+            ip = socket.gethostbyname(self.rx_hostname)
+        self.setDestinationUDPIP2(IpAddr(ip))
 
     @property
     def udp_dstmac(self):
@@ -438,7 +433,7 @@ class Detector(CppDetectorApi):
 
     @udp_dstmac.setter
     def udp_dstmac(self, mac):
-        self.getDestinationUDPMAC2(mac)
+        self.setDestinationUDPMAC(MacAddr(mac))
 
     @property
     def udp_dstmac2(self):
@@ -446,8 +441,7 @@ class Detector(CppDetectorApi):
 
     @udp_dstmac2.setter
     def udp_dstmac2(self, mac):
-        self.getDestinationUDPMAC2(mac)
-
+        self.setDestinationUDPMAC2(MacAddr(mac))
 
     @property
     def udp_srcip(self):
@@ -455,7 +449,7 @@ class Detector(CppDetectorApi):
 
     @udp_srcip.setter
     def udp_srcip(self, ip):
-        self.setSourceUDPIP(ip)
+        self.setSourceUDPIP(IpAddr(ip))
 
     @property
     def udp_srcip2(self):
@@ -487,7 +481,7 @@ class Detector(CppDetectorApi):
 
     @src_udpmac.setter
     def src_udpmac(self, mac):
-        self.setSourceUDPMAC(mac)
+        self.setSourceUDPMAC(MacAddr(mac))
 
     @property
     def src_udpip2(self):
@@ -495,7 +489,7 @@ class Detector(CppDetectorApi):
 
     @src_udpip2.setter
     def src_udpip2(self, ip):
-        self.setSourceUDPIP(ip)
+        self.setSourceUDPIP(IpAddr(ip))
 
     @property
     def src_udpip(self):
@@ -503,8 +497,7 @@ class Detector(CppDetectorApi):
 
     @src_udpip.setter
     def src_udpip(self, ip):
-        self.setSourceUDPIP(ip)
-
+        self.setSourceUDPIP(IpAddr(ip))
 
     @property
     def src_udpmac2(self):
@@ -512,7 +505,7 @@ class Detector(CppDetectorApi):
 
     @src_udpmac2.setter
     def src_udpmac2(self, mac):
-        self.setSourceUDPMAC2(mac)
+        self.setSourceUDPMAC2(MacAddr(mac))
 
     @property
     def vhighvoltage(self):
@@ -542,8 +535,6 @@ class Detector(CppDetectorApi):
     def rx_status(self):
         return element_if_equal(self.getReceiverStatus())
 
-
-
     @property
     def rx_udpsocksize(self):
         return element_if_equal(self.getRxUDPSocketBufferSize())
@@ -558,7 +549,7 @@ class Detector(CppDetectorApi):
 
     @property
     def trimbits(self):
-        return NotImplementedError('trimbits are set only')
+        return NotImplementedError("trimbits are set only")
 
     @trimbits.setter
     def trimbits(self, fname):
@@ -592,7 +583,6 @@ class Detector(CppDetectorApi):
     def adcreg(self):
         return self._adc_register
 
-
     @property
     def led(self):
         return element_if_equal(self.getLEDEnable())
@@ -651,8 +641,6 @@ class Detector(CppDetectorApi):
     def vthreshold(self):
         return element_if_equal(self.getDAC(dacIndex.THRESHOLD))
 
-    
-
     @property
     def type(self):
         return element_if_equal(self.getDetectorType())
@@ -665,10 +653,27 @@ class Detector(CppDetectorApi):
     def rx_missingpackets(self):
         return element_if_equal(self.getNumMissingPackets())
 
-
     """
     Some Eiger stuff, does this have to be here or can we move it to subclass?
     """
+    @property
+    def subexptime(self):
+        res = self.getSubExptime()
+        return reduce_time(res)
+
+    @subexptime.setter
+    def subexptime(self, t):
+        self.setSubExptime(ut.make_timedelta(t))
+
+    @property
+    def subdeadtime(self):
+        res = self.getSubDeadTime()
+        reduce_time(res)
+
+    @subdeadtime.setter
+    def subdeadtime(self, t):
+        self.setSubDeadTime(ut.make_timedelta(t))
+
     @property
     def partialreset(self):
         return element_if_equal(self.getPartialReset())
@@ -727,7 +732,6 @@ class Detector(CppDetectorApi):
         res = self.getMeasuredSubFramePeriod()
         return element_if_equal([it.total_seconds() for it in res])
 
-
     @property
     def storeinram(self):
         return element_if_equal(self.getStoreInRamMode())
@@ -736,11 +740,116 @@ class Detector(CppDetectorApi):
     def storeinram(self, value):
         self.setStoreInRamMode(value)
 
+    """
+    Jungfrau specific
+    """
+
+    @property
+    @element
+    def auto_comp_disable(self):
+        return self.getAutoCompDisable()
+
+    @auto_comp_disable.setter
+    def auto_comp_disable(self, value):
+        self.setAutoCompDisable(value)
+
+    @property
+    @element
+    def storagecells(self):
+        return self.getNumberOfAdditionalStorageCells()
+
+    @storagecells.setter
+    def storagecells(self, n_cells):
+        self.setNumberOfAdditionalStorageCells(n_cells)
+
+    @property
+    @element
+    def storagecell_start(self):
+        return self.getStorageCellStart()
+
+    @storagecell_start.setter
+    def storagecell_start(self, value):
+        self.setStorageCellStart(value)
+
+    @property
+    @element
+    def storagecell_delay(self):
+        return ut.reduce_time(self.getStorageCellDelay())
+
+    @storagecell_delay.setter
+    def storagecell_delay(self, t):
+        self.setStorageCellDelay(ut.make_timedelta(t))
+
+    @property
+    @element
+    def temp_threshold(self):
+        return self.getThresholdTemperature()
+
+    @temp_threshold.setter
+    def temp_threshold(self, value):
+        self.setThresholdTemperature(value)
+
+    @property
+    @element
+    def temp_event(self):
+        return self.getTemperatureEvent()
+
+    @temp_event.setter
+    def temp_event(self, value):
+        if value != 0:
+            raise ValueError("Value needs to be 0 for reset. Setting not allowed")
+        self.resetTemperatureEvent()
+
+    @property
+    @element
+    def temp_control(self):
+        return self.getTemperatureControl()
+
+    @temp_control.setter
+    def temp_control(self, value):
+        self.setTemperatureControl(value)
+
+
+    @property
+    @element
+    def selinterface(self):
+        return self.getSelectedUDPInterface()
+
+    @selinterface.setter
+    def selinterface(self, i):
+        self.selectUDPInterface(i)
+
+    """
+    Gotthard2
+    """
+
+    @property
+    @element
+    def veto(self):
+        return self.getVeto()
+
+    @veto.setter
+    def veto(self, value):
+        self.setVeto(value)
+
 
     """
     Mythen3 specific
     """
 
+    @property
+    def gatedelay(self):
+        return reduce_time(self.getGateDelayForAllGates())
+
+    @gatedelay.setter
+    def gatedelay(self, value):
+        if is_iterable(value):
+            if len(value) == 3:
+                for i, v in enumerate(value):
+                    self.setGateDelay(i, ut.make_timedelta(v))
+        else:
+            self.setGateDelay(-1, ut.make_timedelta(value))
+
     @property
     def counters(self):
         mask = self.getCounterMask()
@@ -750,7 +859,6 @@ class Detector(CppDetectorApi):
         else:
             return [get_set_bits(m) for m in mask]
 
-
     @counters.setter
     def counters(self, values):
         self.setCounterMask(list_to_bitmask(values))
@@ -869,7 +977,7 @@ class Detector(CppDetectorApi):
 
     @property
     def pattern(self):
-        #TODO! Clean fix
+        # TODO! Clean fix
         print("Set only")
         return 0
 
@@ -958,7 +1066,6 @@ class Detector(CppDetectorApi):
     def patwaittime2(self, nclk):
         self.setPatternWaitTime(2, nclk)
 
-
     @property
     def patloop0(self):
         return element_if_equal(self.getPatternLoopAddresses(0))
@@ -1007,7 +1114,6 @@ class Detector(CppDetectorApi):
     def patnloop2(self, n):
         self.setPatternLoopCycles(2, n)
 
-
     @property
     @element
     def v_a(self):

python/slsdet/utils.py

@@ -7,10 +7,17 @@ but not directly used in controlling the detector
 from collections import namedtuple
 import _slsdet #C++ lib
 import functools
-
+import datetime as dt
 
 Geometry = namedtuple('Geometry', ['x', 'y'])
 
+def is_iterable(item):
+    try: 
+        iter(item)
+    except TypeError:
+        return False
+    return True
+
 def get_set_bits(mask):
     """
     Return a list of the set bits in a python integer
@@ -41,6 +48,9 @@ def all_equal(mylist):
 
 def element_if_equal(mylist):
     """If all elements are equal return only one element"""
+    if not is_iterable(mylist):
+        return mylist
+        
     if all_equal(mylist):
         if len(mylist) == 0:
             return None
@@ -49,6 +59,15 @@ def element_if_equal(mylist):
     else:
         return mylist
 
+def reduce_time(mylist):
+    res = element_if_equal(element_if_equal(mylist))
+    if isinstance(res, dt.timedelta):
+        return res.total_seconds()
+    elif isinstance(res[0], list):
+        return [[item.total_seconds() for item in subl] for subl in res]
+    else:
+        return [r.total_seconds() for r in res]
+
 def element(func):
     """
     Wrapper to return either list or element
@@ -69,3 +88,8 @@ def eiger_register_to_time(register):
     exponent = register & 0b111
     return clocks*10**exponent / 100e6
 
+def make_timedelta(t):
+    if isinstance(t, dt.timedelta):
+           return t
+    else:
+        return dt.timedelta(seconds=t)

python/src/detector_in.cpp

@@ -8,10 +8,17 @@
 #include "network_utils.h"
 #include "sls_detector_defs.h"
 #include "typecaster.h"
+
+#include "TimeHelper.h"
+#include <array>
+#include <chrono>
 namespace py = pybind11;
 void init_det(py::module &m) {
     using sls::Detector;
     using sls::Positions;
+    using sls::Result;
+    using sls::defs;
+    using sls::ns;
     
     py::class_<Detector> CppDetectorApi(m, "CppDetectorApi");
     CppDetectorApi

python/src/enums.cpp

@@ -65,38 +65,14 @@ void init_enums(py::module &m) {
         .export_values();
 
     py::enum_<slsDetectorDefs::externalSignalFlag>(Defs, "externalSignalFlag")
-        .value("GET_EXTERNAL_SIGNAL_FLAG",
-               slsDetectorDefs::externalSignalFlag::GET_EXTERNAL_SIGNAL_FLAG)
-        .value("SIGNAL_OFF", slsDetectorDefs::externalSignalFlag::SIGNAL_OFF)
-        .value("GATE_IN_ACTIVE_HIGH",
-               slsDetectorDefs::externalSignalFlag::GATE_IN_ACTIVE_HIGH)
-        .value("GATE_IN_ACTIVE_LOW",
-               slsDetectorDefs::externalSignalFlag::GATE_IN_ACTIVE_LOW)
         .value("TRIGGER_IN_RISING_EDGE",
                slsDetectorDefs::externalSignalFlag::TRIGGER_IN_RISING_EDGE)
         .value("TRIGGER_IN_FALLING_EDGE",
                slsDetectorDefs::externalSignalFlag::TRIGGER_IN_FALLING_EDGE)
-        .value("RO_TRIGGER_IN_RISING_EDGE",
-               slsDetectorDefs::externalSignalFlag::RO_TRIGGER_IN_RISING_EDGE)
-        .value("RO_TRIGGER_IN_FALLING_EDGE",
-               slsDetectorDefs::externalSignalFlag::RO_TRIGGER_IN_FALLING_EDGE)
-        .value("GATE_OUT_ACTIVE_HIGH",
-               slsDetectorDefs::externalSignalFlag::GATE_OUT_ACTIVE_HIGH)
-        .value("GATE_OUT_ACTIVE_LOW",
-               slsDetectorDefs::externalSignalFlag::GATE_OUT_ACTIVE_LOW)
-        .value("TRIGGER_OUT_RISING_EDGE",
-               slsDetectorDefs::externalSignalFlag::TRIGGER_OUT_RISING_EDGE)
-        .value("TRIGGER_OUT_FALLING_EDGE",
-               slsDetectorDefs::externalSignalFlag::TRIGGER_OUT_FALLING_EDGE)
-        .value("RO_TRIGGER_OUT_RISING_EDGE",
-               slsDetectorDefs::externalSignalFlag::RO_TRIGGER_OUT_RISING_EDGE)
-        .value("RO_TRIGGER_OUT_FALLING_EDGE",
-               slsDetectorDefs::externalSignalFlag::RO_TRIGGER_OUT_FALLING_EDGE)
-        .value("OUTPUT_LOW", slsDetectorDefs::externalSignalFlag::OUTPUT_LOW)
-        .value("OUTPUT_HIGH", slsDetectorDefs::externalSignalFlag::OUTPUT_HIGH)
-        .value(
-            "MASTER_SLAVE_SYNCHRONIZATION",
-            slsDetectorDefs::externalSignalFlag::MASTER_SLAVE_SYNCHRONIZATION)
+        .value("INVERSION_ON",
+               slsDetectorDefs::externalSignalFlag::INVERSION_ON)
+        .value("INVERSION_OFF",
+               slsDetectorDefs::externalSignalFlag::INVERSION_OFF)
         .export_values();
 
     py::enum_<slsDetectorDefs::timingMode>(Defs, "timingMode")
@@ -106,6 +82,9 @@ void init_enums(py::module &m) {
                slsDetectorDefs::timingMode::TRIGGER_EXPOSURE)
         .value("GATED", slsDetectorDefs::timingMode::GATED)
         .value("BURST_TRIGGER", slsDetectorDefs::timingMode::BURST_TRIGGER)
+        .value("TRIGGER_GATED", slsDetectorDefs::timingMode::TRIGGER_GATED)
+        .value("NUM_TIMING_MODES",
+               slsDetectorDefs::timingMode::NUM_TIMING_MODES)
         .export_values();
 
     py::enum_<slsDetectorDefs::dacIndex>(Defs, "dacIndex")
@@ -184,6 +163,11 @@ void init_enums(py::module &m) {
         .value("VB_PIXBUF", slsDetectorDefs::dacIndex::VB_PIXBUF)
         .value("VIN_COM", slsDetectorDefs::dacIndex::VIN_COM)
         .value("VDD_PROT", slsDetectorDefs::dacIndex::VDD_PROT)
+        .value("VBP_COLBUF", slsDetectorDefs::dacIndex::VBP_COLBUF)
+        .value("VB_SDA", slsDetectorDefs::dacIndex::VB_SDA)
+        .value("VCASC_SFP", slsDetectorDefs::dacIndex::VCASC_SFP)
+        .value("VIPRE_CDS", slsDetectorDefs::dacIndex::VIPRE_CDS)
+        .value("IBIAS_SFP", slsDetectorDefs::dacIndex::IBIAS_SFP)
         .value("V_POWER_A", slsDetectorDefs::dacIndex::V_POWER_A)
         .value("V_POWER_B", slsDetectorDefs::dacIndex::V_POWER_B)
         .value("V_POWER_C", slsDetectorDefs::dacIndex::V_POWER_C)
@@ -224,6 +208,18 @@ void init_enums(py::module &m) {
         .value("FORCESWITCHG2",
                slsDetectorDefs::detectorSettings::FORCESWITCHG2)
         .value("VERYLOWGAIN", slsDetectorDefs::detectorSettings::VERYLOWGAIN)
+        .value("G1_HIGHGAIN", slsDetectorDefs::detectorSettings::G1_HIGHGAIN)
+        .value("G1_LOWGAIN", slsDetectorDefs::detectorSettings::G1_LOWGAIN)
+        .value("G2_HIGHCAP_HIGHGAIN",
+               slsDetectorDefs::detectorSettings::G2_HIGHCAP_HIGHGAIN)
+        .value("G2_HIGHCAP_LOWGAIN",
+               slsDetectorDefs::detectorSettings::G2_HIGHCAP_LOWGAIN)
+        .value("G2_LOWCAP_HIGHGAIN",
+               slsDetectorDefs::detectorSettings::G2_LOWCAP_HIGHGAIN)
+        .value("G2_LOWCAP_LOWGAIN",
+               slsDetectorDefs::detectorSettings::G2_LOWCAP_LOWGAIN)
+        .value("G4_HIGHGAIN", slsDetectorDefs::detectorSettings::G4_HIGHGAIN)
+        .value("G4_LOWGAIN", slsDetectorDefs::detectorSettings::G4_LOWGAIN)
         .value("UNDEFINED", slsDetectorDefs::detectorSettings::UNDEFINED)
         .value("UNINITIALIZED",
                slsDetectorDefs::detectorSettings::UNINITIALIZED)
@@ -231,22 +227,22 @@ void init_enums(py::module &m) {
 
     py::enum_<slsDetectorDefs::clockIndex>(Defs, "clockIndex")
         .value("ADC_CLOCK", slsDetectorDefs::clockIndex::ADC_CLOCK)
-        .value("DBIT_CLOCK", slsDetectorDefs::clockIndex::DBIT_CLOCK)
-        .value("RUN_CLOCK", slsDetectorDefs::clockIndex::RUN_CLOCK)
-        .value("SYNC_CLOCK", slsDetectorDefs::clockIndex::SYNC_CLOCK)
+        .value(" DBIT_CLOCK", slsDetectorDefs::clockIndex::DBIT_CLOCK)
+        .value(" RUN_CLOCK", slsDetectorDefs::clockIndex::RUN_CLOCK)
+        .value(" SYNC_CLOCK", slsDetectorDefs::clockIndex::SYNC_CLOCK)
         .export_values();
 
     py::enum_<slsDetectorDefs::readoutMode>(Defs, "readoutMode")
         .value("ANALOG_ONLY", slsDetectorDefs::readoutMode::ANALOG_ONLY)
-        .value("DIGITAL_ONLY", slsDetectorDefs::readoutMode::DIGITAL_ONLY)
-        .value("ANALOG_AND_DIGITAL",
+        .value(" DIGITAL_ONLY", slsDetectorDefs::readoutMode::DIGITAL_ONLY)
+        .value(" ANALOG_AND_DIGITAL",
                slsDetectorDefs::readoutMode::ANALOG_AND_DIGITAL)
         .export_values();
 
     py::enum_<slsDetectorDefs::speedLevel>(Defs, "speedLevel")
         .value("FULL_SPEED", slsDetectorDefs::speedLevel::FULL_SPEED)
-        .value("HALF_SPEED", slsDetectorDefs::speedLevel::HALF_SPEED)
-        .value("QUARTER_SPEED", slsDetectorDefs::speedLevel::QUARTER_SPEED)
+        .value(" HALF_SPEED", slsDetectorDefs::speedLevel::HALF_SPEED)
+        .value(" QUARTER_SPEED", slsDetectorDefs::speedLevel::QUARTER_SPEED)
         .export_values();
 
     py::enum_<slsDetectorDefs::portType>(Defs, "portType")
@@ -283,12 +279,13 @@ void init_enums(py::module &m) {
         .value("BURST_OFF", slsDetectorDefs::burstMode::BURST_OFF)
         .value("BURST_INTERNAL", slsDetectorDefs::burstMode::BURST_INTERNAL)
         .value("BURST_EXTERNAL", slsDetectorDefs::burstMode::BURST_EXTERNAL)
+        .value("NUM_BURST_MODES", slsDetectorDefs::burstMode::NUM_BURST_MODES)
         .export_values();
 
     py::enum_<slsDetectorDefs::timingSourceType>(Defs, "timingSourceType")
         .value("TIMING_INTERNAL",
                slsDetectorDefs::timingSourceType::TIMING_INTERNAL)
-        .value("TIMING_EXTERNAL",
+        .value(" TIMING_EXTERNAL",
                slsDetectorDefs::timingSourceType::TIMING_EXTERNAL)
         .export_values();
 }

python/src/network.cpp

@@ -15,10 +15,11 @@ using sls::IpAddr;
 using sls::MacAddr;
 void init_network(py::module &m) {
 
-    py::class_ <IpAddr> IpAddr(m, "IpAddr");
-    IpAddr.def(py::init())
+    py::class_ <IpAddr>(m, "IpAddr")
+    .def(py::init())
     .def(py::init<const std::string&>())
     .def(py::init<uint32_t>())
+    .def(py::init<const IpAddr&>())
     .def("hex", &IpAddr::hex)
     .def("uint32", &IpAddr::uint32)
     .def(py::self == py::self)
@@ -26,10 +27,11 @@ void init_network(py::module &m) {
     .def("str", &IpAddr::str);
 
 
-    py::class_ <MacAddr> MacAddr(m, "MacAddr");
-    MacAddr.def(py::init())
+    py::class_ <MacAddr>(m, "MacAddr")
+    .def(py::init())
     .def(py::init<const std::string&>())
     .def(py::init<uint64_t>())
+    .def(py::init<const MacAddr&>())
     .def("hex", &MacAddr::hex)
     .def(py::self == py::self)
     .def("uint64", &MacAddr::uint64)

python/unit-tests/test_utils.py

@@ -5,7 +5,28 @@ Testing functions from utils.py
 """
 
 import pytest
-from sls_detector.utils import *
+from slsdet.utils import *
+import datetime as dt
+
+def test_iterable():
+    assert is_iterable(5) == False
+    assert is_iterable('abc') == True
+    assert is_iterable([]) == True
+    assert is_iterable(5.9) == False
+
+def test_reduce_time_to_single_value_from_list():
+    t = 3*[dt.timedelta(seconds = 1)]
+    assert reduce_time(t) == 1
+
+def test_reduce_time_to_single_value_from_list_of_lists():
+    t = 3*[dt.timedelta(seconds = 3.3)]
+    tt = 5*t
+    assert reduce_time(tt) == 3.3
+
+def test_reduce_time_when_sublist_is_different():
+    t = [dt.timedelta(seconds = 1), dt.timedelta(seconds = 2), dt.timedelta(seconds = 1)]
+    tt = [t for i in range(4)]
+    assert reduce_time(tt) == [1,2,1]
 
 
 def test_convert_zero():
@@ -60,3 +81,16 @@ def test_list_to_mask():
     assert(list_to_bitmask([1]) == 2)
     assert(list_to_bitmask([3]) == 8)
     assert(list_to_bitmask([1,1,1]) == 2)
+
+
+def test_make_timedelta_from_double():
+    t = 1.7
+    r = make_timedelta(t)
+    assert t == r.total_seconds()
+    assert r == dt.timedelta(seconds=t)
+
+def test_make_timedelta_from_timedelta():
+    t = dt.timedelta(minutes=1)
+    r = make_timedelta(t)
+    assert 60 == r.total_seconds()
+    assert r == dt.timedelta(minutes=1)

slsDetectorCalibration/MovingStat.h

@@ -14,8 +14,8 @@ class MovingStat
       /** constructor
 	  \param nn number of samples  parameter to be used
       */
-      MovingStat(int nn=1000) : n(nn), m_n(0) {}
-
+    MovingStat(int nn) : n(nn), m_n(0), m_newM(0),m_newM2(0)  {}
+      //  void setPointers(double *me, double *va) {mean=me; var=va;}
 	/**
 	   clears the moving average number of samples parameter, mean and standard deviation
 	*/
@@ -31,10 +31,10 @@ class MovingStat
 	*/
         void Set(double val, double rms=0, int m=-1)
         {
-	  if (m>0) m_n = m;  else m_n = n; 
+	  if (m>=0) m_n = m;  else m_n = n; 
 	  m_newM=val*m_n; 
-	  // cout << "set " << val << " " << m << " " << m_n << " " << m_newM << endl;
 	  SetRMS(rms);
+	  // cout << "set " << val << " " << m << " " << m_n << " " << m_newM << endl;
         }
 	/**
 	   clears the moving average number of samples parameter, mean and standard deviation
@@ -42,12 +42,15 @@ class MovingStat
         void SetRMS(double rms)
         {
 	  if (rms<=0) {
-	    m_newM2=m_newM*m_newM/n;
+	    if (m_n>0)
+	      m_newM2=m_newM*m_newM/m_n;
+	    else
+	      m_newM2=0;
 	    //m_n=0;
 	  } else {
-	    if (m_n>0)
+	    if (m_n>0) {
 	      m_newM2=(m_n*rms*rms+m_newM*m_newM/m_n);
-	    else {
+	    } else {
 	      m_newM2=(m_n*rms*rms+m_newM*m_newM/n);
 	      m_n=0;
 	    }
@@ -102,7 +105,8 @@ class MovingStat
 	      m_newM = x;
 	      m_newM2 = x*x;
 	      m_n++;
-            }             else             {
+            }             
+	  else             {
 	    m_newM = m_newM + x - m_newM/m_n;
 	    m_newM2 = m_newM2 + x*x - m_newM2/m_n;
 	  }
@@ -122,6 +126,8 @@ class MovingStat
         inline double Mean() const
         {
 	  //  cout << "get " <<  m_n << " " << m_newM << " " << m_newM/m_n << endl;
+	 
+	  
 	    return (m_n > 0) ? m_newM/m_n : 0.0;
         }
 
@@ -138,7 +144,7 @@ class MovingStat
 	 */
         inline double Variance() const
         {
-	  return ( (m_n > 1) ? (M2()-Mean()*Mean()) : 0.0 );
+	  return (m_n > 0) ? m_newM2/m_n-m_newM/m_n*m_newM/m_n : 0.0;
         }
 
 	/** returns the standard deviation, 0 if no elements are inside
@@ -146,7 +152,8 @@ class MovingStat
 	 */
         inline double StandardDeviation() const
         {
-	  return ( (Variance() > 0) ? sqrt( Variance() ) : -1 );
+	  
+	  return sqrt(Variance());//
         }
 
     private:

slsDetectorCalibration/analogDetector.h

@@ -68,10 +68,15 @@ template <class dataType> class analogDetector {
       det->getDetectorSize(nx,ny);
     
     stat=new pedestalSubtraction*[ny];
+    /* pedMean=new double*[ny]; */
+    /* pedVariance=new double*[ny]; */
     for (int i=0; i<ny; i++) {
       stat[i]=new pedestalSubtraction[nx];
-      for (int ix=0; ix<nx; ix++) {
+      /* pedMean[i]=new double[nx]; */
+      /* pedVariance[i]=new double[nx]; */
+      for (ix=0; ix<nx; ++ix) {
 	stat[i][ix].SetNPedestals(nped);
+	/* stat[i][ix].setPointers(&(pedMean[iy][ix]),&(pedVariance[iy][ix])); */
       }
     }
     image=new int[nx*ny];
@@ -95,7 +100,16 @@ template <class dataType> class analogDetector {
   /**
      destructor. Deletes the pdestalSubtraction array and the image
   */
-  virtual ~analogDetector() {for (int i=0; i<ny; i++) delete [] stat[i]; delete [] stat; delete [] image;
+  virtual ~analogDetector() {
+    for (int i=0; i<ny; i++) {
+      delete [] stat[i]; 
+      /* delete [] pedMean[i];  */
+      /* delete [] pedVariance[i]; */
+    }; 
+    /* delete [] pedMean;  */
+    /* delete [] pedVariance; */ 
+    delete [] stat; 
+    delete [] image;
 #ifdef ROOTSPECTRUM
     delete hs;
 #ifdef ROOTCLUST
@@ -132,16 +146,23 @@ template <class dataType> class analogDetector {
     
 
     stat=new pedestalSubtraction*[ny];
+    /* pedMean=new double*[ny]; */
+    /* pedVariance=new double*[ny]; */
     for (int i=0; i<ny; i++) {
       stat[i]=new pedestalSubtraction[nx];
+      /* pedMean[i]=new double[nx]; */
+      /* pedVariance[i]=new double[nx]; */
     }
     
     int nped=orig->SetNPedestals();
     //cout << nped << " " << orig->getPedestal(ix,iy) << orig->getPedestalRMS(ix,iy) << endl;
-    for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+    for (iy=0; iy<ny; ++iy) {
+      for (ix=0; ix<nx; ++ix) {
+	//stat[iy][ix].setPointers(&(pedMean[iy][ix]),&(pedVariance[iy][ix]));
 	stat[iy][ix].SetNPedestals(nped);
 	setPedestal(ix,iy,orig->getPedestal(ix,iy),orig->getPedestalRMS(ix,iy),orig->GetNPedestals(ix,iy));
+	/* if (ix==50 && iy==50)  */
+	/*   cout << "clone ped " <<  " " << ix << " " << iy << " " << getPedestal(ix,iy) << " " << getPedestalRMS(ix,iy)<< " " << GetNPedestals(ix,iy) << endl; */
       }
     }
     image=new int[nx*ny];
@@ -199,7 +220,7 @@ template <class dataType> class analogDetector {
      \param nns reference to number of subpixels for interpolating detector, will always be 1 in this case
      \returns number of pixels of the detector image
    */
-  virtual int getImageSize(int &nnx, int &nny, int &nns){nnx=nx; nny=ny; nns=1; return nx*ny;}; 
+  virtual int getImageSize(int &nnx, int &nny, int &nnsx, int &nnsy){nnx=nx; nny=ny; nnsx=1; nnsy=1; return nx*ny;}; 
  /**
      Returns data size of the detector image matrix
      \param nnx reference to pixel size in x
@@ -231,8 +252,8 @@ template <class dataType> class analogDetector {
     if (gm) {
       if (gmap) delete [] gmap; 
       gmap=new double[nnx*nny];
-      for (int iy=0; iy<nny; iy++) {
-	for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  gmap[iy*nnx+ix]=gm[iy*nnx+ix];
 	  // cout << gmap[iy*nnx+ix] << " " ;
 	}
@@ -251,8 +272,8 @@ template <class dataType> class analogDetector {
     void *ret;
     if (gmap)  {
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  gm[iy*nx+ix]=gmap[iy*nx+ix];
 	}
       }
@@ -267,8 +288,8 @@ template <class dataType> class analogDetector {
     
   virtual void newDataSet(){
     iframe=-1; 
-    for (int iy=0; iy<ny; iy++) 
-      for (int ix=0; ix<nx; ix++) {
+    for (iy=0; iy<ny; ++iy) 
+      for (ix=0; ix<nx; ++ix) {
 	stat[iy][ix].Clear(); 
 	image[iy*nx+ix]=0;
       }
@@ -285,12 +306,14 @@ template <class dataType> class analogDetector {
   };  
   
   /** resets the commonModeSubtraction and increases the frame index */
-  virtual void newFrame(){iframe++; if (cmSub) cmSub->newFrame();};
+  virtual void newFrame(){iframe++; if (cmSub) cmSub->newFrame(); det->newFrame();};
 
   /** resets the commonModeSubtraction and increases the frame index */
   virtual void newFrame(char *data){
     iframe++; 
     if (cmSub) cmSub->newFrame(); 
+    det->newFrame();
+    // det->getData(data);
     calcGhost(data); 
     //    cout << getId() << " Calc ghost " <<  getGhost(15,15) << endl;
   };
@@ -359,8 +382,8 @@ template <class dataType> class analogDetector {
       // cout << "+"<< getId() << endl;
       if (cmSub) {
 	//cout << "*" << endl;
-	  for (int iy=ymin; iy<ymax; iy++) { 
-	for (int ix=xmin; ix<xmax; ix++) {
+	for (iy=ymin; iy<ymax; ++iy) { 
+	  for (ix=xmin; ix<xmax; ++ix) {
 	    // if (getNumpedestals(ix,iy)>0) 
 	  //  if (det->isGood(ix,iy)) {
 	      addToCommonMode(data, ix, iy);
@@ -403,8 +426,10 @@ template <class dataType> class analogDetector {
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
 	if (cmSub && cm>0) {
 	  return stat[iy][ix].getPedestal()+getCommonMode(ix,iy); 
-	  
-	}     	else return stat[iy][ix].getPedestal(); 
+	  //return pedMean[iy][ix]+getCommonMode(ix,iy); 
+	} 
+	//return pedMean[iy][ix];
+	return stat[iy][ix].getPedestal(); 
       } else return -1;
     };
 
@@ -422,8 +447,8 @@ template <class dataType> class analogDetector {
 	  g=gmap[iy*nx+ix];
 	  if (g==0) g=-1.;
 	}
-      
-	return stat[iy][ix].getPedestalRMS();//divide by gain?
+	//	return sqrt(pedVariance[iy][ix])/g;
+	return stat[iy][ix].getPedestalRMS()/g;//divide by gain?
       }
       return -1;
     };
@@ -441,10 +466,11 @@ template <class dataType> class analogDetector {
        \returns pedestal value
     */
     virtual double* getPedestal(double *ped){
-      if (ped==NULL)
+      if (ped==NULL) {
 	ped=new double[nx*ny];
-      for (int iy=0; iy<ny; iy++) {
-	for (int ix=0; ix<nx; ix++) {
+      }
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  ped[iy*nx+ix]=stat[iy][ix].getPedestal();
 	    //cout << ped[iy*nx+ix] << " " ;
 	}
@@ -459,10 +485,11 @@ template <class dataType> class analogDetector {
        \returns pedestal rms
     */
     virtual double* getPedestalRMS(double *ped=NULL){
-      if (ped==NULL)
+      if (ped==NULL) {
 	ped=new double[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      }
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  ped[iy*nx+ix]=stat[iy][ix].getPedestalRMS();
 	}
       }
@@ -501,8 +528,8 @@ template <class dataType> class analogDetector {
     */
     virtual void setPedestal(double *ped, double *rms=NULL, int m=-1){
       double rr=0;
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (rms) rr=rms[iy*nx+ix];
 	  stat[iy][ix].setPedestal(ped[iy*nx+ix],rr, m);
 	  //  cout << ix << " " << iy << " " << ped[iy*nx+ix] << " " << stat[iy][ix].getPedestal() << endl;
@@ -531,8 +558,8 @@ template <class dataType> class analogDetector {
        \param rms pointer to array of pedestal rms
     */
  virtual void setPedestalRMS(double *rms){
-	for (int iy=ymin; iy<ymax; iy++) {
-      for (int ix=xmin; ix<xmax; ix++) {
+   for (iy=ymin; iy<ymax; ++iy) {
+     for (ix=xmin; ix<xmax; ++ix) {
 	  stat[iy][ix].setPedestalRMS(rms[iy*nx+ix]);
 	};
       };
@@ -572,8 +599,8 @@ template <class dataType> class analogDetector {
 
 #endif
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	    gm[iy*nx+ix]=image[iy*nx+ix];
 #ifdef ROOTSPECTRUM
 	    hmap->SetBinContent(ix+1, iy+1,image[iy*nx+ix]);
@@ -620,8 +647,8 @@ template <class dataType> class analogDetector {
       TH2F *hmap=new TH2F("hmap","hmap",nx, -0.5,nx-0.5, ny, -0.5, ny-0.5);
 
 #endif
-      for (int iy=0; iy<ny; iy++) {
-    for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	/* if (cmSub)  */
 	/*     gm[iy*nx+ix]=stat[iy][ix].getPedestal()-cmSub->getCommonMode(); */
 	/* else */
@@ -667,15 +694,15 @@ template <class dataType> class analogDetector {
 
 
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  stat[iy][ix].setPedestal(gm[iy*nx+ix],-1,-1);
 	}
       }
       delete [] gm;
       return 1;
     }
-    return NULL;
+    return 0;
   }
   
  /**
@@ -692,15 +719,15 @@ template <class dataType> class analogDetector {
 
 
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  image[iy*nx+ix]=gm[iy*nx+ix];
 	}
       }
       delete [] gm;
       return 1;
     }
-    return NULL;
+    return 0;
   }
   
    
@@ -718,8 +745,8 @@ template <class dataType> class analogDetector {
     float *gm=NULL;
     void *ret;
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  gm[iy*nx+ix]=stat[iy][ix].getPedestalRMS();
 	}
       }
@@ -740,8 +767,8 @@ template <class dataType> class analogDetector {
     if (nnx>nx) nnx=nx;
     if (nny>ny) nny=ny;
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  stat[iy][ix].setPedestalRMS(gm[iy*nx+ix]);
 	}
       }
@@ -777,11 +804,13 @@ template <class dataType> class analogDetector {
             
       //cout << xmin << " " << xmax << endl;
       // cout << ymin << " " << ymax << endl;
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (det->isGood(ix,iy)) {
 	    // addToPedestal(data,ix,iy,1);
 	    addToPedestal(data,ix,iy,cm);
+	/* if (ix==50 && iy==50) */
+	/*   cout<< "*ped* " << id << " " << ix << " " << iy << " " << det->getChannel(data,ix,iy) << " " << stat[iy][ix].getPedestal() << " " <<  stat[iy][ix].getPedestalRMS() <<" " << stat[iy][ix]. GetNPedestals() << endl; */
 	  //if (ix==10 && iy==10) 
 	  // cout <<ix << " " << iy << " " << getPedestal(ix,iy)<< endl;
 #ifdef ROOTSPECTRUM 
@@ -905,8 +934,8 @@ template <class dataType> class analogDetector {
       
       //calcGhost(data);
 
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (det->isGood(ix,iy))
 	    val[iy*nx+ix]+=subtractPedestal(data, ix, iy,cm);
 	}
@@ -952,8 +981,8 @@ template <class dataType> class analogDetector {
 	hs->Fill(val,(iy-ymin)*(xmax-xmin)+(ix-xmin));
 #ifdef ROOTCLUST
 	double v3=0,v5=0,v7=0,v9=0;
-	for (int iix=-4; iix<5; iix++)
-	  for (int iiy=-4; iiy<5; iiy++) {
+	for (int iix=-4; iix<5; i++ix)
+	  for (int iiy=-4; iiy<5; i++iy) {
 	    if (det)
 	      val= (dataSign*det->getValue(data, ix+iix, iy+iiy)-getPedestal(ix+iix,iy+iiy,cm))/g;
 	    else
@@ -1047,8 +1076,8 @@ template <class dataType> class analogDetector {
 
        //calcGhost(data);
        addToCommonMode(data);
-       for (int iy=ymin; iy<ymax; iy++) {
-	 for (int ix=xmin; ix<xmax; ix++) {
+       for (iy=ymin; iy<ymax; ++iy) {
+	 for (ix=xmin; ix<xmax; ++ix) {
 	   if (det->isGood(ix,iy))
 	     nph[iy*nx+ix]+=getNPhotons(data, ix, iy);
 	 }
@@ -1062,8 +1091,8 @@ template <class dataType> class analogDetector {
      
     */
    virtual void clearImage(){  
-       for (int iy=0; iy<ny; iy++) { 
-     for (int ix=0; ix<nx; ix++) {
+       for (iy=0; iy<ny; ++iy) { 
+     for (ix=0; ix<nx; ++ix) {
 	 image[iy*nx+ix]=0;
        }
      }
@@ -1093,8 +1122,8 @@ template <class dataType> class analogDetector {
     int SetNPedestals(int i=-1) {
       int ix=0, iy=0; 
       if (i>0) 
-	  for (iy=0; iy<ny; iy++) 
-	for (ix=0; ix<nx; ix++) 
+	  for (iy=0; iy<ny; ++iy) 
+	for (ix=0; ix<nx; ++ix) 
 	    stat[iy][ix].SetNPedestals(i); 
       return stat[0][0].SetNPedestals();
     };
@@ -1129,8 +1158,8 @@ template <class dataType> class analogDetector {
       newFrame(data);
       //calcGhost(data);
       addToCommonMode(data);
-      for (int iy=ymi; iy<yma; iy++)
-	for (int ix=xmi; ix<xma; ix++)
+      for (iy=ymi; iy<yma; ++iy)
+	for (ix=xmi; ix<xma; ++ix)
 	  if (det->isGood(ix,iy)) {
 	    if (ix>=0 && ix<nx && iy>=0 && iy<ny) 
 	      val+=getNPhotons(data, ix, iy);
@@ -1233,6 +1262,8 @@ FILE *getFilePointer(){return myFile;};
     int nx; /**< Size of the detector in x direction */
     int ny; /**< Size of the detector in y direction */
     pedestalSubtraction **stat; /**< pedestalSubtraction class */
+    /* double **pedMean; /\**< pedestalSubtraction class *\/ */
+    /* double **pedVariance; /\**< pedestalSubtraction class *\/ */
     commonModeSubtraction *cmSub;/**< commonModeSubtraction class */
     int dataSign; /**< sign of the data i.e. 1 if photon is positive, -1 if negative */
     int iframe;  /**< frame number (not from file but incremented within the dataset every time newFrame is called */
@@ -1250,6 +1281,7 @@ FILE *getFilePointer(){return myFile;};
     frameMode fMode; /**< current detector frame mode */
     detectorMode dMode; /**< current detector frame mode */
     FILE *myFile; /**< file pointer to write to */
+    int ix, iy;
 #ifdef ROOTSPECTRUM
     TH2F *hs;
 #ifdef ROOTCLUST

slsDetectorCalibration/dataStructures/moench04CtbZmq10GbData.h

@@ -44,6 +44,28 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
 
     int adc_nr[32]={9, 8,11,10,13,12,15,14,1,0,3,2,5,4,7,6,23,22,21,20,19,18,17,16,31,30,29,28,27,26,25,24 };
 
+    /* 
+       iadc=ptr%32
+       isample=ptr/32
+
+       col=(adc_nr[iadc]%16)*25+isample%25
+       if (adc_nr[iadc]<16)
+       row=199-isample/25;
+       else
+       row=200+isample/25
+
+
+       adc0 col(9*25..10*25-1) row(199..0)
+       adc1 col(8*25..9*25-1)  row(199..0)
+       adc2 col(11*25..12*25-1) row(199..0)
+       adc3 col(10*25..11*25-1) row(199..0)
+       adc4 col(13*25..14*25-1) row(199..0)
+       adc5 col(12*25..13*25-1) row(199..0)
+       adc6 col(15*25..16*25-1) row(199..0)
+       adc7 col(14*25..15*25-1) row(199..0)
+       adc8 col(1*25..2*25-1) row(199..0)
+     */
+
     int row, col;
 
     //int isample;
@@ -134,7 +156,7 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
     if (dSamples>isample) {
       ptr=data+32*(isample+1)+8*isample;
       sample=*((uint64_t*)ptr);
-    cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
+      // cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
     if (sample & (1<<ibit[isc]))
       return 1;
     else

slsDetectorCalibration/dataStructures/moench04CtbZmqData.h

@@ -120,7 +120,7 @@ class moench04CtbZmqData : public slsDetectorData<uint16_t> {
     if (dSamples>isample) {
       ptr=data+aoff+8*isample;
       sample=*((uint64_t*)ptr);
-    cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
+      // cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
     if (sample & (1<<ibit[isc]))
       return 1;
     else

slsDetectorCalibration/dataStructures/slsDetectorData.h

@@ -20,6 +20,8 @@ class slsDetectorData {
   int **dataROIMask; /**< Array of size nx*ny 1 if channel is good (or in the ROI), 0 if bad channel (or out of ROI)   */
   int *xmap;
   int *ymap;
+  dataType **orderedData; 
+  int isOrdered;
   
  public:
   
@@ -37,35 +39,29 @@ class slsDetectorData {
   \param dROI Array of size nx*ny. The elements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s. 
   
   */
- slsDetectorData(int npx, int npy, int dsize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), dataSize(dsize) {
+ slsDetectorData(int npx, int npy, int dsize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), dataSize(dsize), orderedData(NULL), isOrdered(0) {
+    
+   int el=dsize/sizeof(dataType);
+    xmap=new int[el];
+    ymap=new int[el];
     
 
-    xmap=new int[dsize/sizeof(dataType)];
-    ymap=new int[dsize/sizeof(dataType)];
     
-
-    //  if (dataMask==NULL) {
-    dataMask=new dataType*[ny];
-    for(int i = 0; i < ny; i++) {
-      dataMask[i] = new dataType[nx];
-    }
-    // }
-    
-    // if (dataMap==NULL) {
+    orderedData=new dataType*[ny];
     dataMap=new int*[ny];
-    for(int i = 0; i < ny; i++) {
-      dataMap[i] = new int[nx];
-      }
-    // }
-    // if (dataROIMask==NULL) {
+    dataMask=new dataType*[ny];
     dataROIMask=new int*[ny];
     for(int i = 0; i < ny; i++) {
+      dataMap[i] = new int[nx];
+      orderedData[i]=new dataType[nx];
+      dataMask[i] = new dataType[nx];
       dataROIMask[i] = new int[nx];
       for (int j=0; j<nx; j++)
 	dataROIMask[i][j]=1;
+    
     }    
-    // }
-    for (int ip=0; ip<dsize/sizeof(dataType); ip++){
+  
+    for (int ip=0; ip<el; ip++){
       xmap[ip]=-1;
       ymap[ip]=-1;
       }
@@ -74,22 +70,24 @@ class slsDetectorData {
     setDataMask(dMask);
     setDataROIMask(dROI);
     
-  };
+  }
   
   virtual ~slsDetectorData() {
     for(int i = 0; i < ny; i++) {
       delete [] dataMap[i];
       delete [] dataMask[i];
       delete [] dataROIMask[i];
+      delete [] orderedData[i];
     }
     delete [] dataMap;
     delete [] dataMask;
     delete [] dataROIMask;
+    delete [] orderedData;
     delete [] xmap;
     delete [] ymap;
   };
   
-  
+  virtual int getPointer(int ix,int iy) {return dataMap[iy][ix];};
   /**
      defines the data map (as offset) - no error checking if datasize and offsets are compatible!
      \param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset). If NULL (default),the data are arranged as if read out row by row (dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);)
@@ -202,26 +200,31 @@ class slsDetectorData {
   int setDataSize(int d) {dataSize=d; return dataSize;};
 
   
-  virtual void getPixel(int ip, int &x, int &y) {x=xmap[ip]; y=ymap[ip];};
+virtual void getPixel(int ip, int &x, int &y) {x=xmap[ip]; y=ymap[ip];};
   
-  virtual dataType **getData(char *ptr, int dsize=-1) {
-    
-    dataType **data;
+virtual dataType **getData(char *ptr, int dsize=-1) {
+    int el=dsize/sizeof(dataType);
+    //dataType **data;
     int ix,iy;
-    data=new dataType*[ny];
-    for(int i = 0; i < ny; i++) {
-      data[i]=new dataType[nx];
-    }
+    //data=new dataType*[ny];
+    //for(int i = 0; i < ny; i++) {
+    //  data[i]=new dataType[nx];
+    //}
+     isOrdered=0;
     if (dsize<=0 || dsize>dataSize) dsize=dataSize;
-    for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
+
+    for (int ip=0; ip<(el); ip++) {
       getPixel(ip,ix,iy);
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
-	data[iy][ix]=getChannel(ptr,ix,iy);
+	//data[iy][ix]=getChannel(ptr,ix,iy);
+	orderedData[iy][ix]=*(ptr+ip);//getChannel(ptr,ix,iy);
       }
     }
-    return data;
+    isOrdered=1;
+    return orderedData;
+}
 
-  };
+ void newFrame(){isOrdered=0;};
 
   virtual double **getImage(char *ptr, int dsize=-1) {
     
@@ -231,15 +234,15 @@ class slsDetectorData {
     for(int i = 0; i < ny; i++) {
       data[i]=new double[nx];
     }
+    int el=dsize/sizeof(dataType);
     if (dsize<=0 || dsize>dataSize) dsize=dataSize;
-    for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
+    for (int ip=0; ip<el; ip++) {
       getPixel(ip,ix,iy);
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
 	data[iy][ix]=getValue(ptr,ix,iy);
       }
     }
     return data;   
-    
   };
   
   /** 
@@ -256,7 +259,10 @@ class slsDetectorData {
       // cout << ix << " " << iy << " " ;
       //cout << dataMap[ix][iy] << " " << (void*)data << " " << dataSize<< endl;
       m=dataMask[iy][ix];
-      d=*((dataType*)(data+dataMap[iy][ix]));
+        if (isOrdered==0)
+	  d=*((dataType*)(data+getPointer(ix,iy)));
+      else
+	d=orderedData[iy][ix];
     }  
     return d^m;
   };

slsDetectorCalibration/ghostSummation.h

@@ -13,7 +13,7 @@ template <class dataType> class ghostSummation {
   /** constructor
       \param xt crosstalk
   */
- ghostSummation(slsDetectorData<dataType> *d, double xt) : xtalk(xt),det(d)  {
+  ghostSummation(slsDetectorData<dataType> *d, double xt) : xtalk(xt),det(d), nx(1), ny(1)  {
     if (det)
       det->getDetectorSize(nx,ny);
     ghost=new double[nx*ny];
@@ -22,6 +22,9 @@ template <class dataType> class ghostSummation {
   ghostSummation(ghostSummation *orig) {
     xtalk=orig->xtalk; 
     det=orig->det;
+    nx=1;
+    ny=1;
+    det->getDetectorSize(nx,ny);
     ghost=new double[nx*ny];
     
   }

slsDetectorCalibration/interpolatingDetector.h

@@ -107,11 +107,11 @@ class interpolatingDetector : public singlePhotonDetector {
       singlePhotonDetector::clearImage();
   };
 
-  int getImageSize(int &nnx, int &nny, int &ns) {
+  int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
     if (interp) 
-      return interp->getImageSize(nnx, nny, ns); 
+      return interp->getImageSize(nnx, nny, nsx, nsy); 
     else 
-      return analogDetector<uint16_t>::getImageSize(nnx, nny, ns);
+      return analogDetector<uint16_t>::getImageSize(nnx, nny, nsx, nsy);
   };
 
 
@@ -251,6 +251,7 @@ int addFrame(char *data,  int *ph=NULL, int ff=0) {
     }
 
     virtual int getNSubPixels(){ if (interp) return interp->getNSubPixels(); else return 1;}
+
     virtual int setNSubPixels(int ns)  { 
       if (interp) {
 	pthread_mutex_lock(fi); 

slsDetectorCalibration/interpolations/eta2InterpolationBase.h

@@ -13,7 +13,7 @@
 class eta2InterpolationBase : public virtual etaInterpolationBase {
   
  public:
- eta2InterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) :  etaInterpolationBase(nx,ny, ns, nb, emin, emax) {
+ eta2InterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) :  etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax) {
     
     /* if (etamin>=etamax) { */
     /*   etamin=-1; */
@@ -37,7 +37,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
     
     int corner;
     corner=calcQuad(data, tot, totquad, sDum); 
-    if (nSubPixels>2) 
+    if (nSubPixelsX>2 || nSubPixelsY>2) 
       calcEta(totquad, sDum, etax, etay); 
     getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
 
@@ -53,7 +53,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
     
     int corner;
     corner=calcQuad(data, tot, totquad, sDum); 
-    if (nSubPixels>2) 
+    if (nSubPixelsX>2 || nSubPixelsY>2  ) 
       calcEta(totquad, sDum, etax, etay); 
     getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
 
@@ -93,7 +93,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
        ;
      } 
      double etax=0, etay=0;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2) { 
        cc[0][0]=cl[xoff+3*yoff];
        cc[1][0]=cl[xoff+3*(yoff+1)];
        cc[0][1]=cl[xoff+1+3*yoff];
@@ -133,7 +133,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
        ;
      } 
      double etax=0, etay=0;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2) { 
        cc[0][0]=cl[xoff+3*yoff];
        cc[1][0]=cl[xoff+3*(yoff+1)];
        cc[0][1]=cl[xoff+1+3*yoff];
@@ -182,31 +182,31 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
       }
     
 
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
 
-       ex=(etax-etamin)/etastep;
-       ey=(etay-etamin)/etastep;
+       ex=(etax-etamin)/etastepX;
+       ey=(etay-etamin)/etastepY;
        if (ex<0) {
 	 cout << "x*"<< ex << endl;
 	 ex=0;
        } 
-       if (ex>=nbeta) {
+       if (ex>=nbetaX) {
 	 cout << "x?"<< ex << endl;
-	 ex=nbeta-1;
+	 ex=nbetaX-1;
        }
        if (ey<0) {
-	 cout << "y*"<< ey << endl;
+	 cout << "y*"<< ey << " " << nbetaY << endl;
 	 ey=0;
        } 
-       if (ey>=nbeta) {
-	 cout << "y?"<< ey << endl;
-	 ey=nbeta-1;
+       if (ey>=nbetaY) {
+	 cout << "y?"<< ey << " " << nbetaY << endl;
+	 ey=nbetaY-1;
        }
     
     
    
-       xpos_eta=(((double)hhx[(ey*nbeta+ex)]))+dX ;///((double)nSubPixels);
-       ypos_eta=(((double)hhy[(ey*nbeta+ex)]))+dY ;///((double)nSubPixels);
+       xpos_eta=(((double)hhx[(ey*nbetaX+ex)]))+dX ;///((double)nSubPixels);
+       ypos_eta=(((double)hhy[(ey*nbetaX+ex)]))+dY ;///((double)nSubPixels);
        
      } else {
        xpos_eta=0.5*dX+0.25;
@@ -347,10 +347,10 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
 #endif
 #ifndef MYROOT1
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
 #endif
     return 0;    
   };
@@ -360,22 +360,22 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
    // cout << "ff" << endl;
    calcDiff(1, hhx, hhy); //get flat
    double avg=0;
-   for (ipx=0; ipx<nSubPixels; ipx++)
-     for (ipy=0; ipy<nSubPixels; ipy++)
-       avg+=flat[ipx+ipy*nSubPixels];
-   avg/=nSubPixels*nSubPixels;
+   for (ipx=0; ipx<nSubPixelsX; ipx++)
+     for (ipy=0; ipy<nSubPixelsY; ipy++)
+       avg+=flat[ipx+ipy*nSubPixelsX];
+   avg/=nSubPixelsY*nSubPixelsX;
 
-   for (int ibx=0 ; ibx<nSubPixels*nPixelsX; ibx++) {
-     ipx=ibx%nSubPixels-nSubPixels/2;
-       if (ipx<0) ipx=nSubPixels+ipx;
-     for (int iby=0 ; iby<nSubPixels*nPixelsY; iby++) {
-       ipy=iby%nSubPixels-nSubPixels/2;
-     if (ipy<0) ipy=nSubPixels+ipy;
+   for (int ibx=0 ; ibx<nSubPixelsX*nPixelsX; ibx++) {
+     ipx=ibx%nSubPixelsX-nSubPixelsX/2;
+       if (ipx<0) ipx=nSubPixelsX+ipx;
+     for (int iby=0 ; iby<nSubPixelsY*nPixelsY; iby++) {
+       ipy=iby%nSubPixelsY-nSubPixelsY/2;
+     if (ipy<0) ipy=nSubPixelsY+ipy;
      // cout << ipx << " " << ipy << " " << ibx << " " << iby << endl;
-     if (flat[ipx+ipy*nSubPixels]>0)
-       hintcorr[ibx+iby*nSubPixels*nPixelsX]=hint[ibx+iby*nSubPixels*nPixelsX]*(avg/flat[ipx+ipy*nSubPixels]);
+     if (flat[ipx+ipy*nSubPixelsX]>0)
+       hintcorr[ibx+iby*nSubPixelsX*nPixelsX]=hint[ibx+iby*nSubPixelsX*nPixelsX]*(avg/flat[ipx+ipy*nSubPixelsX]);
      else
-       hintcorr[ibx+iby*nSubPixels*nPixelsX]=hint[ibx+iby*nSubPixels*nPixelsX];
+       hintcorr[ibx+iby*nSubPixelsX*nPixelsX]=hint[ibx+iby*nSubPixelsX*nPixelsX];
 
 
      }

slsDetectorCalibration/interpolations/eta3InterpolationBase.h

@@ -13,35 +13,12 @@
 class eta3InterpolationBase : public virtual etaInterpolationBase  {
   
  public:
- eta3InterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx, ny, ns, nb, emin, emax) {
+ eta3InterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx, ny, ns, nsy, nb, nby, emin, emax) {
     //  cout << "e3ib " << nb << " " << emin << " " << emax << endl; 
     /* if (nbeta<=0) { */
     /*   nbeta=nSubPixels*10;    */
     /* } */
-    if (etamin>=etamax) {
-      etamin=-1;
-      etamax=1; 
-    }
   
-    etastep=(etamax-etamin)/nbeta;
-#ifdef MYROOT1
-    delete heta;
-    delete hhx;
-    delete hhy;
-    heta=new TH2D("heta","heta",nbeta,etamin,etamax,nbeta,etamin,etamax);
-    hhx=new TH2D("hhx","hhx",nbeta,etamin,etamax,nbeta,etamin,etamax);
-    hhy=new TH2D("hhy","hhy",nbeta,etamin,etamax,nbeta,etamin,etamax);
-#endif
-#ifndef MYROOT1
-    /* delete [] heta; */
-    /* delete [] hhx; */
-    /* delete [] hhy; */
-
-    /* heta=new int[nbeta*nbeta]; */
-    /* hhx=new float[nbeta*nbeta]; */
-    /* hhy=new float[nbeta*nbeta]; */
-    
-#endif
     //   cout << nbeta << " " << etamin << " " << etamax << endl;
 };
   
@@ -88,7 +65,7 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     
   
     double etax, etay;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
        calcEta3(cl,etax,etay, totquad);
      } 
      return getInterpolatedPosition(x,y,etax, etay,quad,int_x,int_y);
@@ -101,7 +78,7 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     
     
      double etax, etay;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
        calcEta3(cl,etax,etay, totquad);
      }
      return getInterpolatedPosition(x,y,etax, etay,quad,int_x,int_y);
@@ -117,38 +94,38 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     double xpos_eta=0,ypos_eta=0;
     int ex,ey;
 
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
 
 #ifdef MYROOT1
-    xpos_eta=(hhx->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixels);
-    ypos_eta=(hhy->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixels);
+    xpos_eta=(hhx->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixelsX);
+    ypos_eta=(hhy->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixelsY);
 #endif
 #ifndef MYROOT1
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
     if (ex<0) {
       /* cout << etax << " " << etamin << " "; */
       /*  cout << "3x*"<< ex << endl; */
       ex=0;
 	} 
-    if (ex>=nbeta) {
+    if (ex>=nbetaX) {
       /* cout << etax << " " << etamin << " "; */
       /* cout << "3x?"<< ex << endl; */
-      ex=nbeta-1;
+      ex=nbetaX-1;
     }
     if (ey<0) {
       /* cout << etay << " " << etamin << " "; */
       /* cout << "3y*"<< ey << endl; */
       ey=0;
 	} 
-    if (ey>=nbeta) {
+    if (ey>=nbetaY) {
       /* cout << etay << " " << etamin << " "; */
       /* cout << "3y?"<< ey << endl; */
-      ey=nbeta-1;
+      ey=nbetaY-1;
       
     }
-    xpos_eta=(((double)hhx[(ey*nbeta+ex)]));///((double)nSubPixels);
-    ypos_eta=(((double)hhy[(ey*nbeta+ex)]));///((double)nSubPixels);
+    xpos_eta=(((double)hhx[(ey*nbetaX+ex)]));///((double)nSubPixels);
+    ypos_eta=(((double)hhy[(ey*nbetaX+ex)]));///((double)nSubPixels);
 
 #endif
    
@@ -265,10 +242,10 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
 #endif
 #ifndef MYROOT1
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
 #endif
     return 0;    
   };

slsDetectorCalibration/interpolations/etaInterpolationBase.h

@@ -7,7 +7,7 @@
 #include <TH2D.h>
 #include <TH2F.h>
 #endif
-
+#include <cmath> 
 #include "slsInterpolation.h"
 #include "tiffIO.h"
 
@@ -15,44 +15,51 @@ class etaInterpolationBase : public slsInterpolation {
   
  public:
  
- etaInterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : slsInterpolation(nx,ny,ns), hhx(NULL), hhy(NULL), heta(NULL), nbeta(nb), etamin(emin), etamax(emax) {
+ etaInterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : slsInterpolation(nx,ny,ns,nsy), hhx(NULL), hhy(NULL), heta(NULL), nbetaX(nb), nbetaY(nby), etamin(emin), etamax(emax) {
     // cout << "eb " << nb << " " << emin << " " << emax << endl;  
     // cout << nb << " " << etamin << " " << etamax << endl;
-    if (nbeta<=0) {
+    if (nbetaX<=0) {
       //cout << "aaa:" <<endl;
-      nbeta=nSubPixels*10;
+      nbetaX=nSubPixelsX*10;
+    } 
+    if (nbetaY<=0) {
+      //cout << "aaa:" <<endl;
+      nbetaY=nSubPixelsY*10;
     }
     if (etamin>=etamax) {
       etamin=-1;
       etamax=2;
     }
-    etastep=(etamax-etamin)/nbeta;
-    heta=new int[nbeta*nbeta];
-    hhx=new float[nbeta*nbeta];
-    hhy=new float[nbeta*nbeta];
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
+    heta=new int[nbetaX*nbetaY];
+    hhx=new float[nbetaX*nbetaY];
+    hhy=new float[nbetaX*nbetaY];
     rangeMin=etamin;
     rangeMax=etamax;
-    flat= new double[nSubPixels*nSubPixels];
-    hintcorr=new int [nSubPixels*nSubPixels*nPixelsX*nPixelsY];
+    flat= new double[nSubPixelsX*nSubPixelsY];
+    hintcorr=new int [nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY];
     
   };
   
  etaInterpolationBase(etaInterpolationBase *orig): slsInterpolation(orig){
-   nbeta=orig->nbeta;
+   nbetaX=orig->nbetaX;
+   nbetaY=orig->nbetaY;
    etamin=orig->etamin;
    etamax=orig->etamax;
    rangeMin=orig->rangeMin;
    rangeMax=orig->rangeMax;
 
 
-    etastep=(etamax-etamin)/nbeta;
-    heta=new int[nbeta*nbeta];
-    memcpy(heta,orig->heta,nbeta*nbeta*sizeof(int));
-    hhx=new float[nbeta*nbeta];
-    memcpy(hhx,orig->hhx,nbeta*nbeta*sizeof(float));
-    hhy=new float[nbeta*nbeta];
-    memcpy(hhy,orig->hhy,nbeta*nbeta*sizeof(float));
-    hintcorr=new int [nSubPixels*nSubPixels*nPixelsX*nPixelsY];
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
+    heta=new int[nbetaX*nbetaY];
+    memcpy(heta,orig->heta,nbetaX*nbetaY*sizeof(int));
+    hhx=new float[nbetaX*nbetaY];
+    memcpy(hhx,orig->hhx,nbetaX*nbetaY*sizeof(float));
+    hhy=new float[nbetaX*nbetaY];
+    memcpy(hhy,orig->hhy,nbetaX*nbetaY*sizeof(float));
+    hintcorr=new int [nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY];
 
  };
 
@@ -61,7 +68,7 @@ class etaInterpolationBase : public slsInterpolation {
 
 
   virtual void resetFlatField() {
-    for (int ibx=0; ibx<nbeta*nbeta; ibx++) {
+    for (int ibx=0; ibx<nbetaX*nbetaY; ibx++) {
       heta[ibx]=0;
       hhx[ibx]=0;
       hhy[ibx]=0;
@@ -70,13 +77,16 @@ class etaInterpolationBase : public slsInterpolation {
 
   };
     
-  int *setEta(int *h, int nb=-1, double emin=1, double emax=0)
+  int *setEta(int *h, int nb=-1, int nby=-1, double emin=1, double emax=0)
   {  
     if (h) {
       if (heta) delete [] heta;
       heta=h;
-      nbeta=nb;
-      if (nb<=0) nbeta=nSubPixels*10;
+      nbetaX=nb;
+      nbetaY=nby;
+      if (nbetaX<=0) nbetaX=nSubPixelsX*10;
+      if (nbetaY<=0) nbetaY=nSubPixelsY*10;
+      
       etamin=emin;
       etamax=emax;
       if (etamin>=etamax) {
@@ -85,22 +95,24 @@ class etaInterpolationBase : public slsInterpolation {
       }
       rangeMin=etamin;
       rangeMax=etamax;
-      etastep=(etamax-etamin)/nbeta;
+      etastepX=(etamax-etamin)/nbetaX;
+      etastepY=(etamax-etamin)/nbetaY;
     }
     return heta;
   };
   
-   int *setFlatField(int *h, int nb=-1, double emin=1, double emax=0)
+   int *setFlatField(int *h, int nb=-1, int nby=-1, double emin=1, double emax=0)
   {  
-    return setEta(h, nb, emin, emax);
+    return setEta(h, nb, nby, emin, emax);
   };
 
 
 
   int *getFlatField(){return setEta(NULL);};
   
-  int *getFlatField(int &nb, double &emin, double &emax){
-    nb=nbeta; 
+  int *getFlatField(int &nb, int &nby, double &emin, double &emax){
+    nb=nbetaX; 
+    nby=nbetaY; 
     emin=etamin; 
     emax=etamax; 
     return getFlatField();
@@ -109,13 +121,13 @@ class etaInterpolationBase : public slsInterpolation {
   
   void *writeFlatField(const char * imgname) {
     float *gm=NULL;
-    gm=new float[nbeta*nbeta];
-    for (int ix=0; ix<nbeta; ix++) {
-      for (int iy=0; iy<nbeta; iy++) {
-	gm[iy*nbeta+ix]=heta[iy*nbeta+ix];
+    gm=new float[nbetaX*nbetaY];
+    for (int ix=0; ix<nbetaX; ix++) {
+      for (int iy=0; iy<nbetaY; iy++) {
+	gm[iy*nbetaX+ix]=heta[iy*nbetaX+ix];
       }
     } 
-    WriteToTiff(gm, imgname, nbeta, nbeta);   
+    WriteToTiff(gm, imgname, nbetaX, nbetaY);   
     delete [] gm;
     return NULL; 
   };
@@ -129,16 +141,18 @@ class etaInterpolationBase : public slsInterpolation {
       etamax=2;
     }
     
-    etastep=(etamax-etamin)/nbeta;
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
     uint32 nnx;
     uint32 nny;
     float *gm=ReadFromTiff(imgname, nnx, nny);
-    if (nnx!=nny) {
-      cout << "different number of bins in x " << nnx << "  and y " << nny<< " !"<< endl;
-      cout << "Aborting read"<< endl;
-      return 0;
-    }
-    nbeta=nnx;
+    /* if (nnx!=nny) { */
+    /*   cout << "different number of bins in x " << nnx << "  and y " << nny<< " !"<< endl; */
+    /*   cout << "Aborting read"<< endl; */
+    /*   return 0; */
+    /* } */
+    nbetaX=nnx;
+    nbetaY=nny;
     if (gm) {
       if (heta) {
 	delete [] heta;
@@ -146,13 +160,13 @@ class etaInterpolationBase : public slsInterpolation {
 	delete [] hhy;
       }
       
-      heta=new int[nbeta*nbeta];
-      hhx=new float[nbeta*nbeta];
-      hhy=new float[nbeta*nbeta];
+      heta=new int[nbetaX*nbetaY];
+      hhx=new float[nbetaX*nbetaY];
+      hhy=new float[nbetaX*nbetaY];
       
-      for (int ix=0; ix<nbeta; ix++) {
-	for (int iy=0; iy<nbeta; iy++) {
-	  heta[iy*nbeta+ix]=gm[iy*nbeta+ix];
+      for (int ix=0; ix<nbetaX; ix++) {
+	for (int iy=0; iy<nbetaY; iy++) {
+	  heta[iy*nbetaX+ix]=gm[iy*nbetaX+ix];
 	}
       }
       delete [] gm;
@@ -178,10 +192,10 @@ float *gethhx()
     };
   virtual int addToFlatField(double etax, double etay){
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
     return 0;    
   };
   
@@ -195,80 +209,80 @@ float *gethhx()
    
    float tot_eta=0;
 
-  float *etah=new float[nbeta*nbeta];
-  int etabins=nbeta;
+  float *etah=new float[nbetaX*nbetaY];
+  // int etabins=nbeta;
   int ibb=0;
 
-  for (int ii=0; ii<etabins*etabins; ii++) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
    
       etah[ii]=heta[ii];
       tot_eta+=heta[ii];
   }
   sprintf(tit,"/scratch/eta_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 
 
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibb=(hhx[ii]*nSubPixels);
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibb=(hhx[ii]*nSubPixelsX);
     etah[ii]=ibb;
   }
   sprintf(tit,"/scratch/eta_hhx_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 	  
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibb=hhy[ii]*nSubPixels;
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibb=hhy[ii]*nSubPixelsY;
     etah[ii]=ibb;
   }
   sprintf(tit,"/scratch/eta_hhy_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 	  
   
-  float *ftest=new float[nSubPixels*nSubPixels];
+  float *ftest=new float[nSubPixelsX*nSubPixelsY];
 
-  for (int ib=0; ib<nSubPixels*nSubPixels; ib++) ftest[ib]=0;
+  for (int ib=0; ib<nSubPixelsX*nSubPixelsY; ib++) ftest[ib]=0;
   
 
   //int ibx=0, iby=0;
   
-  for (int ii=0; ii<nbeta*nbeta; ii++) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
     
-    ibx=nSubPixels*hhx[ii];
-    iby=nSubPixels*hhy[ii];
+    ibx=nSubPixelsX*hhx[ii];
+    iby=nSubPixelsY*hhy[ii];
     if (ibx<0) ibx=0;
     if (iby<0) iby=0;
-    if (ibx>=nSubPixels) ibx=nSubPixels-1;
-    if (iby>=nSubPixels) iby=nSubPixels-1;
+    if (ibx>=nSubPixelsX) ibx=nSubPixelsX-1;
+    if (iby>=nSubPixelsY) iby=nSubPixelsY-1;
     
 
-    if (ibx>=0 && ibx<nSubPixels && iby>=0 && iby<nSubPixels) {
+    if (ibx>=0 && ibx<nSubPixelsX && iby>=0 && iby<nSubPixelsY) {
       //
       // if (ibx>0 && iby>0) cout << ibx << " " << iby << " " << ii << endl;
-      ftest[ibx+iby*nSubPixels]+=heta[ii];
+      ftest[ibx+iby*nSubPixelsX]+=heta[ii];
     } else
       cout << "Bad interpolation "<< ii << " " << ibx << " " << iby<< endl; 
     
   }
 
   sprintf(tit,"/scratch/ftest_%d.tiff",ind);
-  WriteToTiff(ftest, tit, nSubPixels, nSubPixels);
+  WriteToTiff(ftest, tit, nSubPixelsX, nSubPixelsY);
 
   //int ibx=0, iby=0;
-  tot_eta/=nSubPixels*nSubPixels;
+  tot_eta/=nSubPixelsX*nSubPixelsY;
   int nbad=0;
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibx=nSubPixels*hhx[ii];
-    iby=nSubPixels*hhy[ii];
-    if (ftest[ibx+iby*nSubPixels]<tot_eta*0.5) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibx=nSubPixelsX*hhx[ii];
+    iby=nSubPixelsY*hhy[ii];
+    if (ftest[ibx+iby*nSubPixelsX]<tot_eta*0.5) {
       etah[ii]=1;
       nbad++;
-    } else if(ftest[ibx+iby*nSubPixels]>tot_eta*2.){
+    } else if(ftest[ibx+iby*nSubPixelsX]>tot_eta*2.){
       etah[ii]=2;
       nbad++;
     } else
       etah[ii]=0;
   }
   sprintf(tit,"/scratch/eta_bad_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
   // cout << "Index: " << ind << "\t Bad bins: "<< nbad << endl;
   //int ibx=0, iby=0;
 
@@ -286,46 +300,44 @@ float *gethhx()
     double diff=0, d;
     //double bsize=1./nSubPixels;
     int nbad=0;
-    double p_tot_x[nSubPixels], p_tot_y[nSubPixels], p_tot[nSubPixels*nSubPixels];
-    double maxdiff=0, mindiff=avg*nSubPixels*nSubPixels;
+    double p_tot_x[nSubPixelsX], p_tot_y[nSubPixelsY], p_tot[nSubPixelsX*nSubPixelsY];
+    double maxdiff=0, mindiff=avg*nSubPixelsX*nSubPixelsY;
    
     int ipx, ipy;
-    for (ipy=0; ipy<nSubPixels; ipy++) {
-      for (ipx=0; ipx<nSubPixels; ipx++) {
-	p_tot[ipx+ipy*nSubPixels]=0;
+    for (ipy=0; ipy<nSubPixelsY; ipy++) {
+      for (ipx=0; ipx<nSubPixelsX; ipx++) {
+	p_tot[ipx+ipy*nSubPixelsX]=0;
       }
       p_tot_y[ipy]=0;
       p_tot_x[ipy]=0;
     }
    
-    for (int ibx=0; ibx<nbeta; ibx++) {
-      for (int iby=0; iby<nbeta; iby++) {
-	ipx=hx[ibx+iby*nbeta]*nSubPixels;
+    for (int ibx=0; ibx<nbetaX; ibx++) {
+      for (int iby=0; iby<nbetaY; iby++) {
+	ipx=hx[ibx+iby*nbetaX]*nSubPixelsX;
 	if (ipx<0) ipx=0;
-	if (ipx>=nSubPixels) ipx=nSubPixels-1;
+	if (ipx>=nSubPixelsX) ipx=nSubPixelsX-1;
 	
-	ipy=hy[ibx+iby*nbeta]*nSubPixels;
+	ipy=hy[ibx+iby*nbetaX]*nSubPixelsY;
 	if (ipy<0) ipy=0;
-	if (ipy>=nSubPixels) ipy=nSubPixels-1;
-	
-	p_tot[ipx+ipy*nSubPixels]+=heta[ibx+iby*nbeta];
-	p_tot_y[ipy]+=heta[ibx+iby*nbeta];
-	p_tot_x[ipx]+=heta[ibx+iby*nbeta];
-	
+	if (ipy>=nSubPixelsY) ipy=nSubPixelsY-1;
 	
+	p_tot[ipx+ipy*nSubPixelsX]+=heta[ibx+iby*nbetaX];
+	p_tot_y[ipy]+=heta[ibx+iby*nbetaX];
+	p_tot_x[ipx]+=heta[ibx+iby*nbetaX];
       }
     }
     
     
     //  cout << endl << endl;
-    for (ipy=0; ipy<nSubPixels; ipy++) { 
+    for (ipy=0; ipy<nSubPixelsY; ipy++) { 
      cout.width(5);
      //flat_y[ipy]=p_tot_y[ipy];//avg/nSubPixels;
-      for (ipx=0; ipx<nSubPixels; ipx++) {
+      for (ipx=0; ipx<nSubPixelsX; ipx++) {
 
 	//	flat_x[ipx]=p_tot_x[ipx];///avg/nSubPixels;
-	flat[ipx+nSubPixels*ipy]=p_tot[ipx+nSubPixels*ipy];///avg;
-	d=p_tot[ipx+nSubPixels*ipy]-avg;
+	flat[ipx+nSubPixelsX*ipy]=p_tot[ipx+nSubPixelsX*ipy];///avg;
+	d=p_tot[ipx+nSubPixelsX*ipy]-avg;
 	if (d<0) d*=-1.;
 	if (d>5*sqrt(avg) )
 	  nbad++;
@@ -354,8 +366,8 @@ float *gethhx()
   float *hhx;
   float *hhy;
   int *heta;
-  int nbeta;
-  double etamin, etamax, etastep;
+  int nbetaX, nbetaY;
+  double etamin, etamax, etastepX, etastepY;
   double rangeMin, rangeMax;
 
 

slsDetectorCalibration/interpolations/etaInterpolationPosXY.h

@@ -9,7 +9,7 @@
 
 class etaInterpolationPosXY : public virtual etaInterpolationBase{
  public:
- etaInterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax){
+ etaInterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax){
     //  cout << "epxy " << nb << " " << emin << " " << emax << endl; cout << nbeta << " " << etamin << " " << etamax << endl; 
   };
 
@@ -24,14 +24,6 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
   virtual void prepareInterpolation(int &ok)
   {
    ok=1;  
-#ifdef MYROOT1   
-   if (hhx) delete hhx;
-   if (hhy) delete hhy;
-
-   hhx=new TH2D("hhx","hhx",heta->GetNbinsX(),heta->GetXaxis()->GetXmin(),heta->GetXaxis()->GetXmax(), heta->GetNbinsY(),heta->GetYaxis()->GetXmin(),heta->GetYaxis()->GetXmax()); 
-   hhy=new TH2D("hhy","hhy",heta->GetNbinsX(),heta->GetXaxis()->GetXmin(),heta->GetXaxis()->GetXmax(), heta->GetNbinsY(),heta->GetYaxis()->GetXmin(),heta->GetYaxis()->GetXmax()); 
-   
-#endif
 
 
    ///*Eta Distribution Rebinning*///
@@ -40,106 +32,128 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
    double tot_eta=0;
    double tot_eta_x=0;
    double tot_eta_y=0;
-   for (int ip=0; ip<nbeta*nbeta; ip++)
+   for (int ip=0; ip<nbetaX*nbetaY; ip++)
      tot_eta+=heta[ip];
    cout << "total eta entries is :"<< tot_eta << endl;   
    if (tot_eta<=0) {ok=0; return;};
 
 
-   double hx[nbeta]; //profile x
-   double hy[nbeta]; //profile y
-   double hix[nbeta]; //integral of projection x
-   double hiy[nbeta]; //integral of projection y
+   double hx[nbetaX]; //profile x
+   double hy[nbetaY]; //profile y
+   double hix[nbetaX]; //integral of projection x
+   double hiy[nbetaY]; //integral of projection y
    //  int ii=0;
-   double etax;//, etay;
-   for (int ib=0; ib<nbeta; ib++) {
+   double etax, etay;
+   for (int ib=0; ib<nbetaX; ib++) {
 
-     tot_eta_x=0;
-     tot_eta_y=0;
    
-     for (int iby=0; iby<nbeta; iby++) {
-       etax=etamin+iby*etastep;
+     //tot_eta_y=0;
+
+     for (int iby=0; iby<nbetaY; iby++) {
+       etay=etamin+iby*etastepY;
        //cout << etax << endl;
-       if (etax>=0 && etax<=1)
-	 hx[iby]=heta[iby+ib*nbeta];
-       else {
-	 hx[iby]=0;
-       }
+     
        // tot_eta_x+=hx[iby];
-       if (etax>=0 && etax<=1)
-	 hy[iby]=heta[ib+iby*nbeta];
+       if (etay>=0 && etay<=1)
+	 hy[iby]=heta[ib+iby*nbetaX];
        else
 	 hy[iby]=0;
        // tot_eta_y+=hy[iby];
      }
 
-     hix[0]=hx[0];
+   
      hiy[0]=hy[0];
 
-     for (int iby=1; iby<nbeta; iby++) {
-       hix[iby]=hix[iby-1]+hx[iby];
+     for (int iby=1; iby<nbetaY; iby++) {
        hiy[iby]=hiy[iby-1]+hy[iby];
      }
 
-     // ii=0;
-     tot_eta_x=hix[nbeta-1]+1;
-     tot_eta_y=hiy[nbeta-1]+1;
+     tot_eta_y=hiy[nbetaY-1]+1;
      
-     for (int ibx=0; ibx<nbeta; ibx++) {
-       if (tot_eta_x<=0) {
-	 hhx[ibx+ib*nbeta]=-1;
-	 //ii=(ibx)/nbeta;
-       } else //if (hix[ibx]>(ii+1)*tot_eta_x*bsize) 
-	 { 
-	   //if (hix[ibx]>tot_eta_x*(ii+1)/nSubPixels) ii++;
-	   hhx[ibx+ib*nbeta]=hix[ibx]/tot_eta_x;
-	 }
-     }
-     /* if (ii!=(nSubPixels-1)) */
-     /*   cout << ib << " x " <<  tot_eta_x << " " << (ii+1)*tot_eta_x*bsize << " " << ii << " " << hix[nbeta-1]<< endl; */
-     
-     //ii=0;
-     
-     for (int ibx=0; ibx<nbeta; ibx++) {
+     for (int iby=0; iby<nbetaY; iby++) {
        if (tot_eta_y<=0) {
-	 hhy[ib+ibx*nbeta]=-1;
+	 hhy[ib+iby*nbetaX]=-1;
 	 //ii=(ibx*nSubPixels)/nbeta;
        } else {   
 	 //if (hiy[ibx]>tot_eta_y*(ii+1)/nSubPixels) ii++;
-	 hhy[ib+ibx*nbeta]=hiy[ibx]/tot_eta_y;
+	 hhy[ib+iby*nbetaX]=hiy[iby]/tot_eta_y;
        }
      }
    }
 
 
+
+   for (int ib=0; ib<nbetaY; ib++) {
+
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       etax=etamin+ibx*etastepX;
+       //cout << etax << endl;
+       if (etax>=0 && etax<=1)
+	 hx[ibx]=heta[ibx+ib*nbetaX];
+       else {
+	 hx[ibx]=0;
+       }
+     }
+     hix[0]=hx[0];
+       
+     for (int ibx=1; ibx<nbetaX; ibx++) {
+       hix[ibx]=hix[ibx-1]+hx[ibx];
+     }
+
+  
+     tot_eta_x=hix[nbetaX-1]+1;
+     
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       if (tot_eta_x<=0) {
+	 hhx[ibx+ib*nbetaX]=-1;
+       } 
+       else { 
+	 hhx[ibx+ib*nbetaX]=hix[ibx]/tot_eta_x;
+       }
+     }
+     
+
+     
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       if (tot_eta_x<=0) {
+	 hhx[ibx+ib*nbetaX]=-1;
+       } else	 { 
+	 //if (hix[ibx]>tot_eta_x*(ii+1)/nSubPixels) ii++;
+	 hhx[ibx+ib*nbetaX]=hix[ibx]/tot_eta_x;
+       }
+     }
+     
+   }
+
+     
    int ibx, iby, ib; 
    
    iby=0;
-   while (hhx[iby*nbeta+nbeta/2]<0) iby++;
+   while (hhx[iby*nbetaY+nbetaY/2]<0) iby++;
    for (ib=0; ib<iby;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhx[ibx+nbeta*ib]=hhx[ibx+nbeta*iby];
+     for (ibx=0; ibx<nbetaX;ibx++)
+       hhx[ibx+nbetaX*ib]=hhx[ibx+nbetaX*iby];
    }
-   iby=nbeta-1;
+   iby=nbetaY-1;
    
-   while (hhx[iby*nbeta+nbeta/2]<0) iby--;
-   for (ib=iby+1; ib<nbeta;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhx[ibx+nbeta*ib]=hhx[ibx+nbeta*iby];
+   while (hhx[iby*nbetaY+nbetaY/2]<0) iby--;
+   for (ib=iby+1; ib<nbetaY;ib++) {
+     for (ibx=0; ibx<nbetaX;ibx++)
+       hhx[ibx+nbetaX*ib]=hhx[ibx+nbetaX*iby];
    }
    
    iby=0;
-   while (hhy[nbeta/2*nbeta+iby]<0) iby++;
+   while (hhy[nbetaX/2*nbetaX+iby]<0) iby++;
    for (ib=0; ib<iby;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhy[ib+nbeta*ibx]=hhy[iby+nbeta*ibx];
+     for (ibx=0; ibx<nbetaY;ibx++)
+       hhy[ib+nbetaX*ibx]=hhy[iby+nbetaX*ibx];
    }
-   iby=nbeta-1;
+   iby=nbetaX-1;
    
-   while (hhy[nbeta/2*nbeta+iby]<0) iby--;
-   for (ib=iby+1; ib<nbeta;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhy[ib+nbeta*ibx]=hhy[iby+nbeta*ibx];
+   while (hhy[nbetaX/2*nbetaX+iby]<0) iby--;
+   for (ib=iby+1; ib<nbetaX;ib++) {
+     for (ibx=0; ibx<nbetaY;ibx++)
+       hhy[ib+nbetaX*ibx]=hhy[iby+nbetaX*ibx];
    }
 
 
@@ -156,9 +170,16 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
 
 };
 
+
+
+
+
+
+
+
 class eta2InterpolationPosXY : public virtual eta2InterpolationBase, public virtual etaInterpolationPosXY {
  public:
- eta2InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax),eta2InterpolationBase(nx,ny,ns, nb, emin,emax),etaInterpolationPosXY(nx,ny,ns, nb, emin,emax){
+ eta2InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),eta2InterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),etaInterpolationPosXY(nx,ny, ns, nsy, nb, nby, emin, emax){
     //  cout << "e2pxy " << nb << " " << emin << " " << emax << endl; 
   };
  
@@ -172,8 +193,8 @@ class eta2InterpolationPosXY : public virtual eta2InterpolationBase, public virt
 
 class eta3InterpolationPosXY : public virtual eta3InterpolationBase, public virtual etaInterpolationPosXY {
  public:
- eta3InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax),eta3InterpolationBase(nx,ny,ns, nb, emin,emax), etaInterpolationPosXY(nx,ny,ns, nb, emin,emax){
-      cout << "e3pxy " << nbeta << " " << etamin << " " << etamax << " " << nSubPixels<< endl;  
+ eta3InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),eta3InterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax), etaInterpolationPosXY(nx,ny, ns, nsy, nb, nby, emin, emax){
+    //   cout << "e3pxy " << nbeta << " " << etamin << " " << etamax << " " << nSubPixels<< endl;  
   };
 
  eta3InterpolationPosXY(eta3InterpolationPosXY *orig): etaInterpolationBase(orig), etaInterpolationPosXY(orig)  {};

slsDetectorCalibration/interpolations/slsInterpolation.h

@@ -29,19 +29,21 @@ class slsInterpolation
 {
 
  public:
- slsInterpolation(int nx=400, int ny=400, int ns=25) :nPixelsX(nx), nPixelsY(ny),  nSubPixels(ns), id(0) {
+ slsInterpolation(int nx=400, int ny=400, int ns=25, int nsy=-1) :nPixelsX(nx), nPixelsY(ny),  nSubPixelsX(ns), nSubPixelsY(nsy),id(0) {
    
- hint=new int[ns*nx*ns*ny];
+    if (nSubPixelsY<=0) nSubPixelsY=nSubPixelsX;
+    hint=new int[nSubPixelsX*nx*nSubPixelsY*ny];
 
 };
   
  slsInterpolation(slsInterpolation *orig){
    nPixelsX=orig->nPixelsX;
    nPixelsY=orig->nPixelsY;
-   nSubPixels=orig->nSubPixels;
+   nSubPixelsX=orig->nSubPixelsX;
+   nSubPixelsY=orig->nSubPixelsY;
    
-   hint=new int[nSubPixels*nPixelsX*nSubPixels*nPixelsY];
-   memcpy(hint, orig->hint,nSubPixels*nPixelsX*nSubPixels*nPixelsY*sizeof(int));
+   hint=new int[nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY];
+   memcpy(hint, orig->hint,nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY*sizeof(int));
  
  };
 
@@ -51,23 +53,37 @@ class slsInterpolation
    return new slsInterpolation(this);
    }*/
 
-  int getNSubPixels() {return nSubPixels;};
+  int getNSubPixelsX() {return nSubPixelsX;};
+  int getNSubPixelsY() {return nSubPixelsY;};
+  int getNSubPixels() {if (nSubPixelsX==nSubPixelsY) return nSubPixelsX; else return 0;};
+  void getNSubPixels(int &nsx, int &nsy) {nsx=nSubPixelsX; nsy=nsx=nSubPixelsY;}
 
+  void setNSubPixels(int ns, int nsy=-1)   {
    
-  int setNSubPixels(int ns)   {
-    if (ns>0 && ns!=nSubPixels) {
       delete [] hint;
-      nSubPixels=ns;
-      hint=new int[nSubPixels*nPixelsX*nSubPixels*nPixelsY];
-    }
-    return nSubPixels;
+      nSubPixelsX=ns;
+      if (nsy>0)  nSubPixelsY=nsy;
+      else nSubPixelsY=ns;
+      
+      hint=new int[nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY];
+      
+      //return nSubPixels;
   }
 
-  int getImageSize(int &nnx, int &nny, int &ns) {
-    nnx=nSubPixels*nPixelsX;
-    nny=nSubPixels*nPixelsY;
-    ns=nSubPixels;
-    return nSubPixels*nSubPixels*nPixelsX*nPixelsY;
+  
+
+
+  int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
+    nnx=nSubPixelsX*nPixelsX;
+    nny=nSubPixelsY*nPixelsY;
+    nsx=nSubPixelsX;
+    nsy=nSubPixelsY;
+    return nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY;
+  };
+  
+
+  int getImageSize() {
+    return nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY;
   };
   
   
@@ -92,14 +108,14 @@ class slsInterpolation
     //cout << "!" <<endl;
     float *gm=NULL;
     int *dummy=getInterpolatedImage();
-    gm=new float[ nSubPixels*  nSubPixels* nPixelsX*nPixelsY];
+    gm=new float[ nSubPixelsX*  nSubPixelsY* nPixelsX*nPixelsY];
     if (gm) {
-      for (int ix=0; ix<nPixelsX*nSubPixels; ix++) {
-	for (int iy=0; iy<nPixelsY*nSubPixels; iy++) {
-	  gm[iy*nPixelsX*nSubPixels+ix]=dummy[iy*nPixelsX*nSubPixels+ix];
+      for (int ix=0; ix<nPixelsX*nSubPixelsX; ix++) {
+	for (int iy=0; iy<nPixelsY*nSubPixelsY; iy++) {
+	  gm[iy*nPixelsX*nSubPixelsX+ix]=dummy[iy*nPixelsX*nSubPixelsX+ix];
 	}
       }
-      WriteToTiff(gm, imgname,nSubPixels* nPixelsX ,nSubPixels* nPixelsY); 
+      WriteToTiff(gm, imgname,nSubPixelsY* nPixelsX ,nSubPixelsY* nPixelsY); 
       delete [] gm;
     } else cout << "Could not allocate float image " << endl;
     return NULL;    
@@ -120,9 +136,9 @@ class slsInterpolation
   virtual void clearInterpolatedImage() {
 
 
-      for (int ix=0; ix<nPixelsX*nSubPixels; ix++) {
-	for (int iy=0; iy<nPixelsY*nSubPixels; iy++) {
-	  hint[iy*nPixelsX*nSubPixels+ix]=0;
+      for (int ix=0; ix<nPixelsX*nSubPixelsX; ix++) {
+	for (int iy=0; iy<nPixelsY*nSubPixelsY; iy++) {
+	  hint[iy*nPixelsX*nSubPixelsX+ix]=0;
 	}
       }
 
@@ -133,11 +149,11 @@ class slsInterpolation
 
 
   virtual int *addToImage(double int_x, double int_y){ 
-    int iy=((double)nSubPixels)*int_y; 
-    int ix=((double)nSubPixels)*int_x; 
-     if (ix>=0 && ix<(nPixelsX*nSubPixels) && iy<(nSubPixels*nPixelsY) && iy>=0 ){
+    int iy=((double)nSubPixelsY)*int_y; 
+    int ix=((double)nSubPixelsX)*int_x; 
+     if (ix>=0 && ix<(nPixelsX*nSubPixelsX) && iy<(nSubPixelsY*nPixelsY) && iy>=0 ){
        // cout << int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << " " << hint[ix+iy*nPixelsX*nSubPixels];
-       (*(hint+ix+iy*nPixelsX*nSubPixels))+=1; 
+       (*(hint+ix+iy*nPixelsX*nSubPixelsX))+=1; 
        // cout << " " << hint[ix+iy*nPixelsX*nSubPixels] << endl;
      }// else
       // cout << "bad! "<< int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << endl;
@@ -180,11 +196,12 @@ class slsInterpolation
     /* cluster[2]=cl+6; */
     
     sum=0;
+    int xoff=0, yoff=0;
+#ifndef WRITE_QUAD 
     double sumBL=0;
     double sumTL=0;
     double sumBR=0;
     double sumTR=0;
-    int xoff=0, yoff=0;
     for (int ix=0; ix<3; ix++) {
       for (int iy=0; iy<3; iy++) {
 	sum+=cl[ix+3*iy];
@@ -204,34 +221,95 @@ class slsInterpolation
 
     
     if(sumTL  >= totquad){
-      /* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; */
-      /* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; */
-      
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumTL  ==sum) { */
+/* #endif */
       corner = TOP_LEFT;
       totquad=sumTL;
       xoff=0;
       yoff=1;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     } 
 
     if(sumBR  >= totquad){
       /* sDum[0][0] = cluster[0][1]; sDum[1][0] = cluster[1][1]; */
       /* sDum[0][1] = cluster[0][2]; sDum[1][1] = cluster[1][2]; */
       
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumBR   ==sum) { */
+/* #endif */
+      corner = BOTTOM_RIGHT;
       xoff=1;
       yoff=0;
-      corner = BOTTOM_RIGHT;
       totquad=sumBR;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     }
     
     if(sumTR  >= totquad){
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumTR ==sum) { */
+/* #endif */
       xoff=1;
       yoff=1;
       /* sDum[0][0] = cluster[1][1]; sDum[1][0] = cluster[2][1]; */
       /* sDum[0][1] = cluster[1][2]; sDum[1][1] = cluster[2][2]; */
       corner = TOP_RIGHT;
       totquad=sumTR;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     }
  
+#endif    
+#ifdef WRITE_QUAD    
+   
+    double sumB=0;
+    double sumT=0;
+    double sumR=0;
+    double sumL=0;
+
+    for (int ix=0; ix<3; ix++) {
+      for (int iy=0; iy<3; iy++) {
+	sum+=cl[ix+3*iy];
+	if (ix<1 ) sumL+=cl[ix+iy*3];
+	if (ix>1) sumR+=cl[ix+iy*3];
+	if (iy<1) sumB=cl[ix+iy*3];
+	if (iy>1) sumT+=cl[ix+iy*3];
+      }
+    } 
+    
+    totquad=sum;
+    if ( sumT==0 && sumR==0) {
+        corner = BOTTOM_LEFT;
+	xoff=0;
+	yoff=0;
+    } else if ( sumB==0 && sumR==0 ) {
+        corner = TOP_LEFT;
+      xoff=0;
+      yoff=1;
+    } else if ( sumT==0 && sumL==0) {
+      corner = BOTTOM_RIGHT;
+      xoff=1;
+      yoff=0;
+    } else if ( sumB==0 && sumL==0) {
+      xoff=1;
+      yoff=1;
+      corner = TOP_RIGHT;
+    } else
+      printf("** bad 2x2 cluster!\n");
+
+#endif
+
 
     for (int ix=0; ix<2; ix++) {
       for (int iy=0; iy<2; iy++) {
@@ -495,7 +573,7 @@ class slsInterpolation
 
  protected:
   int nPixelsX, nPixelsY;
-  int nSubPixels;
+  int nSubPixelsX, nSubPixelsY;
   int id;
   int *hint;
 };

slsDetectorCalibration/moenchExecutables/Makefile.zmq

@@ -1,18 +1,21 @@
 
 INCDIR=   -I. -I../dataStructures ../tiffIO.cpp -I../ -I../interpolations/ -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/ -I../../libs/rapidjson/
-LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt -ltiff   -O3 -g -std=c++11 -Wall
+LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt -ltiff   -O3  -std=c++11 -Wall -L../../build/bin/ -lSlsSupport
 #-L../../bin -lhdf5  -L.
 
 #DESTDIR?=../bin
 
-all:  moenchZmqProcess moenchZmqProcessCtbGui
-
+all:  moenchZmqProcess moenchZmq04Process
+ #moenchZmqProcessCtbGui
 
 moenchZmqProcess:  moenchZmqProcess.cpp   clean
 		      g++ -o moenchZmqProcess  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP 
 
-moenchZmqProcessCtbGui:  moenchZmqProcess.cpp   clean
-		      g++ -o moenchZmqProcessCtbGui  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DCTBGUI
+moenchZmq04Process:  moenchZmqProcess.cpp   clean
+		      g++ -o moench04ZmqProcess  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DMOENCH04 
+
+#moenchZmqProcessCtbGui:  moenchZmqProcess.cpp   clean
+#		      g++ -o moenchZmqProcessCtbGui  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DCTBGUI
 
 clean: 	
 	rm -f  moenchZmqProcess  

slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp

@@ -16,7 +16,8 @@
 
 //#include "etaInterpolationPosXY.h"
 #include "noInterpolation.h"
-#include "etaInterpolationCleverAdaptiveBins.h"
+#include "etaInterpolationPosXY.h"
+//#include "etaInterpolationCleverAdaptiveBins.h"
 //#include "etaInterpolationRandomBins.h"
 using namespace std;
 #define NC 400

slsDetectorCalibration/moenchExecutables/moenchZmqProcess.cpp

@@ -1,13 +1,24 @@
-#define WRITE_QUAD
+//#define WRITE_QUAD
 #define DEVELOPER
-
+#undef CORR
 #define C_GHOST 0.0004
 
 #define CM_ROWS 20
 
 #include "sls_detector_defs.h"
 #include "ZmqSocket.h"
+#ifndef RECT
+#ifndef MOENCH04
 #include "moench03T1ZmqDataNew.h"
+#endif
+#ifdef MOENCH04
+#include "moench04CtbZmq10GbData.h"
+#endif
+
+#endif
+#ifdef RECT
+#include "moench03T1ZmqDataNewRect.h"
+#endif
 #include "moench03GhostSummation.h"
 #include "moench03CommonMode.h"
 #include <vector> 
@@ -31,12 +42,12 @@
 #include "ansi.h"
 #include <iostream>
 
-//#include <chrono>
+#include <chrono>
 #include <ctime> // time_t
 #include <cstdio>
 
 using namespace std;
-//using namespace std::chrono;
+using namespace std::chrono;
 
 //#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
 
@@ -49,10 +60,11 @@ int main(int argc, char *argv[]) {
  */
   FILE *of=NULL;
   int fifosize=5000;
-  int etabins=1000;//nsubpix*2*100;
+  int etabins=1000, etabinsy=1000;//nsubpix*2*100;
   double etamin=-1, etamax=2;
-  int nSubPixels=2;
+  int nSubPixelsX=2;
   //	int emin, emax;
+  int nSubPixelsY=2;
 	// help
   if (argc < 3 ) {
     cprintf(RED, "Help: ./trial [receive socket ip] [receive starting port number] [send_socket ip] [send starting port number] [nthreads] [nsubpix] [gainmap]  [etafile]\n");
@@ -67,21 +79,20 @@ int main(int argc, char *argv[]) {
   char* socketip2 = 0;
   uint32_t portnum2 = 0;
 
+  zmqHeader zHeader, outHeader;
+  zHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
+  outHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
+
   uint32_t nSigma=5;
 
   int ok;
 
-  // high_resolution_clock::time_point t1;
-  // high_resolution_clock::time_point t2 ;
-  time_t begin,end,finished;
+  high_resolution_clock::time_point t1;
+  high_resolution_clock::time_point t2 ;
+    std::chrono::steady_clock::time_point begin,end,finished;
+      //time_t begin,end,finished;
   int rms=0;
   
-  int nped=1000, nped0=100;
-
-#ifdef PTC
-  nped=10000;
-  nped0=10000;
-#endif
 
 
   if (argc > 4) {
@@ -101,10 +112,14 @@ int main(int argc, char *argv[]) {
     nthreads=atoi(argv[5]);
 
   cout << "Number of threads is: " << nthreads << endl;
-  if (argc>6)
-    nSubPixels=atoi(argv[6]);
-  cout << "Number of subpixels is: " << nSubPixels << endl;
-  
+  if (argc>6) {
+    nSubPixelsX=atoi(argv[6]);
+    nSubPixelsY=nSubPixelsX;
+#ifdef RECT
+    nSubPixelsX=2;
+#endif
+  }
+  cout << "Number of subpixels is: " << nSubPixelsX << " " <<  nSubPixelsY << endl;
 
   char *gainfname=NULL;
   if (argc>7) {
@@ -119,12 +134,17 @@ int main(int argc, char *argv[]) {
   }
 
   //slsDetectorData *det=new moench03T1ZmqDataNew(); 
-  moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew(5000,sizeof(int)); 
+#ifndef MOENCH04
+  moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew(); 
+#endif
+#ifdef MOENCH04
+  moench04CtbZmq10GbData *det=new moench04CtbZmq10GbData(); 
+#endif
   cout << endl << " det" <<endl;
   int npx, npy;
   det->getDetectorSize(npx, npy);
 
-
+  int send_something=0;
 
 
   int maxSize = npx*npy*2;//32*2*8192;//5000;//atoi(argv[3]);
@@ -135,17 +155,16 @@ int main(int argc, char *argv[]) {
   char dummybuff[size];
   
 
-  int ncol_cm=CM_ROWS;
-  double xt_ghost=C_GHOST;
-
-
   moench03CommonMode *cm=NULL;
   moench03GhostSummation *gs=NULL;
 #ifdef CORR
-  cm=new moench03CommonMode(ncol_cm);
-  gs=new moench03GhostSummation(det, xt_ghost);
-#endif
   
+  //int ncol_cm=CM_ROWS;
+  //double xt_ghost=C_GHOST;
+
+  cm=new moench03CommonMode(CM_ROWS);
+  gs=new moench03GhostSummation(det, C_GHOST);
+#endif
   double *gainmap=NULL;
   float *gm;
   double *gmap=NULL;
@@ -173,18 +192,18 @@ int main(int argc, char *argv[]) {
 
   //analogDetector<uint16_t> *filter=new analogDetector<uint16_t>(det,1,NULL,1000);
 #ifndef INTERP
-  singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, nped, nped0, -1, -1, gainmap, gs);
+  singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, 1000, 100, -1, -1, gainmap, gs);
 
     multiThreadedCountingDetector *mt=new multiThreadedCountingDetector(filter,nthreads,fifosize);
 
     // multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
 #endif
 #ifdef INTERP
-  eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixels, etabins, etamin, etamax);
+    eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixelsX,nSubPixelsY, etabins,  etabinsy, etamin, etamax);
 
   if (etafname) interp->readFlatField(etafname);
 
-  interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm,  nped, nped0, -1, -1, gainmap, gs);
+  interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm,  1000, 10, -1, -1, gainmap, gs);
   multiThreadedInterpolatingDetector *mt=new multiThreadedInterpolatingDetector(filter,nthreads,fifosize);
 #endif
 
@@ -275,7 +294,17 @@ int main(int argc, char *argv[]) {
 	// header variables
 	uint64_t acqIndex = -1;
 	uint64_t frameIndex = -1;
-	//uint32_t subFrameIndex = -1;
+#ifdef MOENCH_BRANCH
+ 	uint32_t subFrameIndex = -1;
+	int* flippedData = 0;
+#endif
+	
+	uint64_t subframes=0;
+	//uint64_t  isubframe=0;
+	uint64_t  insubframe=0;
+	double subnorm=1;
+	uint64_t  f0=-1, nsubframes=0, nnsubframe=0;
+
 	uint64_t fileindex = -1;
 	string filename = "";
 	//	char* image = new char[size];
@@ -285,10 +314,10 @@ int main(int argc, char *argv[]) {
 	int iframe=0;
 	char ofname[10000];
 		    
-	char fname[10000];
+	string fname;
 	//	int length;
-	int *detimage;
-	int nnx, nny,nns;
+	int *detimage=NULL;
+	int nnx, nny,nnsx, nnsy;
 	//uint32_t imageSize = 0, nPixelsX = 0, nPixelsY = 0, 
 	//uint32_t  dynamicRange = 0;
 	// infinite loop
@@ -296,20 +325,20 @@ int main(int argc, char *argv[]) {
 	uint64_t bunchId = 0;
 	uint64_t timestamp = 0;
 	int16_t modId = 0;
+	uint32_t expLength=0;
 	uint16_t xCoord = 0;
 	uint16_t yCoord = 0;
-	uint16_t zCoord = 0;
+	//uint16_t zCoord = 0;
 	uint32_t debug = 0;
 	//uint32_t dr = 16;
 	//int16_t *dout;//=new int16_t [nnx*nny];
 	uint32_t dr = 32;
 	int32_t *dout=NULL;//=new int32_t [nnx*nny];
+	float *doutf=NULL;//=new int32_t [nnx*nny];
 	uint16_t roundRNumber = 0;
 	uint8_t detType = 0;
 	uint8_t version = 0;
-	//	int* flippedData = 0;
-	string* additionalJsonHeader = 0;
-	//char* additionalJsonHeader = 0;
+	string additionalJsonHeader="" ;
 
 	int32_t threshold=0;
 	
@@ -327,9 +356,10 @@ int main(int argc, char *argv[]) {
 	frameMode fMode=eFrame;
 	double *ped;
 
-	filter->getImageSize(nnx, nny,nns);
+	filter->getImageSize(nnx, nny,nnsx, nnsy);
 
 	
+	std::map<std::string, std::string> addJsonHeader;
 
 
 
@@ -339,21 +369,21 @@ int main(int argc, char *argv[]) {
 
 	  //  cout << "+++++++++++++++++++++++++++++++LOOP" << endl;
 		// get header, (if dummy, fail is on parse error or end of acquisition)
-#ifndef NEWZMQ	
-	  if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename, fileindex)){
-#endif
 
-#ifdef NEWZMQ	
-	    rapidjson::Document doc;
-	    if (!zmqsocket->ReceiveHeader(0, doc, SLS_DETECTOR_JSON_HEADER_VERSION)) {
+
+
+	  //  rapidjson::Document doc;
+	    if (!zmqsocket->ReceiveHeader(0, zHeader, SLS_DETECTOR_JSON_HEADER_VERSION)) {
 	      /* zmqsocket->CloseHeaderMessage();*/
 
-#endif
 	    //	  if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename, fileindex)) {
-	      //  cprintf(RED, "Got Dummy\n");
+	       cprintf(RED, "Got Dummy\n");
 	      //   t1=high_resolution_clock::now();
-	      time(&end);
+	       //time(&end);
+	       //cout << "Measurement lasted " << difftime(end,begin) << endl;
 
+	       end = std::chrono::steady_clock::now();
+	       cout << "Measurement lasted " << (end-begin).count()*0.000001 << " ms" << endl;
 
 	    while (mt->isBusy()) {;}//wait until all data are processed from the queues
 	    
@@ -364,31 +394,68 @@ int main(int argc, char *argv[]) {
 	    if (newFrame>0) {
 	      cprintf(RED,"DIDn't receive any data!\n");
 	    if (send) { 
-	      zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	      
+	      //zHeader.data = false;
+	      outHeader.data=false;
+	      //  zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	      zmqsocket2->SendHeader(0,outHeader);
 	      cprintf(RED, "Sent Dummy\n");
 	    }
 	    } else {
+	      send_something=0;
 	      if (fMode==ePedestal) {
-	      sprintf(ofname,"%s_%ld_ped.tiff",fname,fileindex);
+		sprintf(ofname,"%s_%ld_ped.tiff",fname.c_str(),fileindex);
 		mt->writePedestal(ofname);
 		cout << "Writing pedestal to " << ofname << endl;
-	       if (rms) {
-	      sprintf(ofname,"%s_%ld_var.tiff",fname,fileindex);
+		if (rms){
+		  sprintf(ofname,"%s_%ld_var.tiff",fname.c_str(),fileindex);
 		  mt->writePedestalRMS(ofname);
-	       cout << "Writing pedestal variance to " << ofname << endl;
+		  
 		} 
+		send_something=1;
 	      }
 #ifdef INTERP
 	      else if  (fMode==eFlat) {
 		mt->prepareInterpolation(ok);
-	      sprintf(ofname,"%s_%ld_eta.tiff",fname,fileindex);
+		sprintf(ofname,"%s_%ld_eta.tiff",fname.c_str(),fileindex);
 		mt->writeFlatField(ofname);
 		cout << "Writing eta to " << ofname << endl;
+		send_something=1;
 	      }
 #endif
 	      else {
-	      sprintf(ofname,"%s_%ld.tiff",fname,fileindex);
+		if (subframes>0 ) { 
+		  if (insubframe>0) {
+		    sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
+		    //		  mt->writeImage(ofname);
+		    doutf= new float[nnx*nny];
+		    if (subframes>0 && insubframe!=subframes && insubframe>0)
+		      subnorm=((double)subframes)/((double)insubframe);
+		    else
+		      subnorm=1.;
+		    for (int ix=0; ix<nnx*nny; ix++) {
+		    doutf[ix]=detimage[ix]*subnorm;
+		    if (doutf[ix]<0) doutf[ix]=0;
+		    }
+	    
+		    cout << "Writing image to " << ofname << endl;
+		    
+		    WriteToTiff(doutf,ofname ,nnx, nny); 
+		    
+		    if (doutf)
+		      delete [] doutf;
+		    doutf=NULL;
+		    
+		    nsubframes++;
+		    insubframe=0;
+		    send_something=1;
+		  }
+		} else {
+		  sprintf(ofname,"%s_%ld.tiff",fname.c_str(),fileindex);
 		  mt->writeImage(ofname);
+		  send_something=1;
+		}
+		
 		cout << "Writing image to " << ofname << endl;
 	      }
 	      //  cout << nns*nnx*nny*nns*dr/8 << " " << length << endl;
@@ -397,11 +464,13 @@ int main(int argc, char *argv[]) {
 	      
 	    if (fMode==ePedestal) {   
 	      cprintf(MAGENTA,"Get pedestal!\n");
-	      nns=1;
+	      nnsx=1;
+	      nnsy=1;
+	      
 	      nnx=npx;
 	      nny=npy;
 	      //dout= new int16_t[nnx*nny*nns*nns];
-	      dout= new int32_t[nnx*nny*nns*nns];
+	      dout= new int32_t[nnx*nny*nnsx*nnsy];
 	      // cout << "get pedestal " << endl;
 	      ped=mt->getPedestal();
 	      // cout << "got pedestal " << endl;
@@ -409,7 +478,7 @@ int main(int argc, char *argv[]) {
 	
 		  dout[ix]=ped[ix];
 		  // if (ix<100*400)
-		  // cout << ix << " " << ped[ix] << " "<< dout[ix] << endl;
+		  //   cout << ix << " " << ped[ix] << endl;
 	      }
 	      
 	    }
@@ -427,15 +496,19 @@ int main(int argc, char *argv[]) {
 	     }
 #endif
 	    else {
-	      detimage=mt->getImage(nnx,nny,nns);
+	      detimage=mt->getImage(nnx,nny,nnsx, nnsy);
 	      cprintf(MAGENTA,"Get image!\n");
-	      cout << nnx << " " << nny << " " << nns << endl;
+	      cout << nnx << " " << nny << " " << nnsx << " " << nnsy << endl;
 	      // nns=1;
 	      // nnx=npx;
 	      // nny=npy;
 	      // nnx=nnx*nns;
 	      //nny=nny*nns;
 	      dout= new int32_t[nnx*nny];
+	      if (subframes>0 && insubframe!=subframes && insubframe>0)
+		subnorm=((double)subframes)/((double)insubframe);
+	      else
+		subnorm=1.;
 	      for (int ix=0; ix<nnx*nny; ix++) {
 		// for (int iy=0; iy<nny*nns; iy++) {
 		 //  for (int isx=0; isx<nns; isx++) {
@@ -447,48 +520,49 @@ int main(int argc, char *argv[]) {
 		    
 		//   }
 		// }
-		dout[ix]=detimage[ix];
+		  dout[ix]=detimage[ix]*subnorm;
 		  if (dout[ix]<0) dout[ix]=0;
-		//cout << ix << " " << dout[ix] << endl;
+		  //   cout << ix << " " << dout[ix] << endl;
 		  // }
 	      }
 	    }
+	    //if ((insubframe>0 && subframes>0) || (subframes<=0) ){
 
+	    if(send_something) {
 	   
-	    //// int SendHeaderData ( int index, bool dummy, uint32_t jsonversion, uint32_t dynamicrange = 0, uint64_t fileIndex = 0,
-	      // 		uint32_t ndetx = 0, uint32_t ndety = 0, uint32_t npixelsx = 0, uint32_t npixelsy = 0, uint32_t imageSize = 0,
-	      // 		uint64_t acqIndex = 0, uint64_t fIndex = 0, const char* fname = NULL,
-	      // 		uint64_t frameNumber = 0, uint32_t expLength = 0, uint32_t packetNumber = 0,
-	      // 		uint64_t bunchId = 0, uint64_t timestamp = 0,
-	      // 		uint16_t modId = 0, uint16_t row = 0, uint16_t column = 0, uint16_t reserved = 0,
-	      // 		uint32_t debug = 0, uint16_t roundRNumber = 0,
-	      // 		uint8_t detType = 0, uint8_t version = 0, int gapPixelsEnable = 0, int flippedDataX = 0,
-	      // 		char* additionalJsonHeader = 0) {
-
-
-
-	    //  cout << "Sending image size " << nnx << " " << nny << endl;
-
-// #ifndef DEVELOPER
-// #ifndef MOENCH_BRANCH
-// 	    zmqsocket2->SendHeaderData (0, false, SLS_DETECTOR_JSON_HEADER_VERSION, dr, fileindex, 1,1, nnx, nny, nnx*nny*dr/8,acqIndex, frameIndex, fname, acqIndex,0 , packetNumber,bunchId, timestamp, modId, xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, additionalJsonHeader);
-// #endif
-// #endif
-
-
-// #ifdef DEVELOPER
-// #ifdef CTBGUI
-//  	    zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 0,0,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
-// #endif
-// #ifndef CTBGUI
- 	    zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
-	    //#endif
+	      //  zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);   
 	      
+	      outHeader.data=true;
+	      outHeader.dynamicRange=dr;
+	      outHeader.fileIndex=fileindex;
+	      outHeader.ndetx=1;
+	      outHeader.ndety=1;
+	      outHeader.npixelsx=nnx;
+	      outHeader.npixelsy=nny;
+	      outHeader.imageSize=nnx*nny*dr/8;
+	      outHeader.acqIndex=acqIndex;
+	      outHeader.frameIndex=frameIndex;
+	      outHeader.fname=fname;
+	      outHeader.frameNumber=acqIndex;
+	      outHeader.expLength=expLength;
+	      outHeader.packetNumber=packetNumber;
+	      outHeader.bunchId=bunchId;
+	      outHeader.timestamp=timestamp;
+	      outHeader.modId=modId;
+	      outHeader.row=xCoord;
+	      outHeader.column=yCoord;
+	      outHeader.debug=debug;
+	      outHeader.roundRNumber=roundRNumber;
+	      outHeader.detType=detType;
+	      outHeader.version=version;
 	      
+	      zmqsocket2->SendHeader(0,outHeader);
 	      zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
 	      cprintf(GREEN, "Sent Data\n");
-		
-		zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	    }
+	    outHeader.data=false;
+	    zmqsocket2->SendHeader(0,outHeader);
+	    // zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
 	    cprintf(RED, "Sent Dummy\n");
 	    if (dout)
 	      delete [] dout;
@@ -500,49 +574,103 @@ int main(int argc, char *argv[]) {
 	    mt->clearImage();
 	    
 	    newFrame=1;
-	    //t2 = high_resolution_clock::now();
 	    
-	      time(&finished);
-	      //   auto meas_duration = duration_cast<microseconds>( t2 - t0 ).count();
-	      //   auto real_duration = duration_cast<microseconds>( t2 - t1 ).count();
 	    
-	    cout << "Measurement lasted " << difftime(end,begin) << endl;
-	    cout << "Processing lasted " << difftime(finished,begin) << endl;
+	    //time(&finished);
+	    //cout << "Processing lasted " << difftime(finished,begin) << endl;
+	    
+	       finished = std::chrono::steady_clock::now();
+	       cout << "Processing lasted " << (finished-begin).count()*0.000001 << " ms" << endl;
+#ifdef OPTIMIZE
+	    return 0;
+#endif
 	    continue; //continue to not get out
 
 
 	    }
 
-#ifdef NEWZMQ
+	    //#ifdef NEWZMQ
 	    if (newFrame) {
-	      time(&begin);
-	      // t0 = high_resolution_clock::now();
-	      //cout <<"new frame" << endl;
+	      begin = std::chrono::steady_clock::now();
    
-	      //  acqIndex, frameIndex, subframeIndex, filename, fileindex
-	      size       = doc["size"].GetUint();
-	      // multisize  = size;// * zmqsocket->size();
-	      // dynamicRange  = doc["bitmode"].GetUint();
-	      //  nPixelsX = doc["shape"][0].GetUint();
-	      // nPixelsY = doc["shape"][1].GetUint();
-	      filename        = doc["fname"].GetString();
-	      //acqIndex = doc["acqIndex"].GetUint64();
-	      //frameIndex       = doc["fIndex"].GetUint64();
-	      fileindex        = doc["fileIndex"].GetUint64();
-	      //subFrameIndex    = doc["expLength"].GetUint();
-	      //packetNumber=doc["packetNumber"].GetUint();
-	      //bunchId=doc["bunchId"].GetUint();
-	      //timestamp=doc["timestamp"].GetUint();
-	      //modId=doc["modId"].GetUint();
-	      //debug=doc["debug"].GetUint();
-	      //roundRNumber=doc["roundRNumber"].GetUint();
-	      //detType=doc["detType"].GetUint();
-	      //version=doc["version"].GetUint();
+	      size       = zHeader.imageSize;//doc["size"].GetUint();
 	      
+	      // dynamicRange  = zheader.dynamicRange; //doc["bitmode"].GetUint();
+	      // nPixelsX = zHeader.npixelsx; //doc["shape"][0].GetUint();
+	      // nPixelsY = zHeader.npixelsy;// doc["shape"][1].GetUint();
+	      filename        = zHeader.fname;//doc["fname"].GetString();
+	      acqIndex = zHeader.acqIndex; //doc["acqIndex"].GetUint64();
+		// frameIndex       = zHeader.frameIndex;//doc["fIndex"].GetUint64();
+	      fileindex        = zHeader.fileIndex;//doc["fileIndex"].GetUint64();
+	      expLength   = zHeader.expLength;//doc["expLength"].GetUint();
+	      packetNumber=zHeader.packetNumber;//doc["packetNumber"].GetUint();
+	      bunchId=zHeader.bunchId;//doc["bunchId"].GetUint();
+	      timestamp=zHeader.timestamp;//doc["timestamp"].GetUint();
+	      modId=zHeader.modId;//doc["modId"].GetUint();
+	      debug=zHeader.debug;//doc["debug"].GetUint();
+	      //  roundRNumber=r.roundRNumber;//doc["roundRNumber"].GetUint();
+	      detType=zHeader.detType;//doc["detType"].GetUint();
+	      version=zHeader.version;//doc["version"].GetUint();
+	      /*document["bitmode"].GetUint(); zHeader.dynamicRange
+
+document["fileIndex"].GetUint64(); zHeader.fileIndex
+
+document["detshape"][0].GetUint();
+zHeader.ndetx
+
+document["detshape"][1].GetUint();
+zHeader.ndety
+
+document["shape"][0].GetUint();
+zHeader.npixelsx
+
+document["shape"][1].GetUint();
+zHeader.npixelsy
+
+document["size"].GetUint(); zHeader.imageSize
+
+document["acqIndex"].GetUint64(); zHeader.acqIndex
+
+document["frameIndex"].GetUint64(); zHeader.frameIndex
+
+document["fname"].GetString(); zHeader.fname
+
+document["frameNumber"].GetUint64(); zHeader.frameNumber
+
+document["expLength"].GetUint(); zHeader.expLength
+
+document["packetNumber"].GetUint(); zHeader.packetNumber
+
+document["bunchId"].GetUint64(); zHeader.bunchId
+
+document["timestamp"].GetUint64(); zHeader.timestamp
+
+document["modId"].GetUint(); zHeader.modId
+
+document["row"].GetUint(); zHeader.row
+
+document["column"].GetUint(); zHeader.column
+
+document["reserved"].GetUint(); zHeader.reserved
+
+document["debug"].GetUint(); zHeader.debug
+
+document["roundRNumber"].GetUint(); zHeader.roundRNumber
+
+document["detType"].GetUint(); zHeader.detType
+
+document["version"].GetUint(); zHeader.version
+
+document["flippedDataX"].GetUint(); zHeader.flippedDataX
+
+document["quad"].GetUint(); zHeader.quad
+
+document["completeImage"].GetUint(); zHeader.completeImage
+	      */
 	      //dataSize=size;
 
-	      strcpy(fname,filename.c_str());
-
+	      //strcpy(fname,filename.c_str());
+	      fname=filename;
 	      // cprintf(BLUE, "Header Info:\n"
 	      // 	      "size: %u\n"
 	      // 	      "multisize: %u\n"
@@ -572,6 +700,8 @@ int main(int argc, char *argv[]) {
 	      // 	      xCoord, yCoord,zCoord,
 	      // 	      flippedDataX, packetNumber, bunchId, timestamp, modId, debug, roundRNumber, detType, version);
 	      
+	      addJsonHeader=zHeader.addJsonHeader;
+
 	      /* Analog detector commands */
 	      //isPedestal=0;
 	      //isFlat=0;
@@ -579,13 +709,14 @@ int main(int argc, char *argv[]) {
 	      fMode=eFrame;
 	      frameMode_s="frame";
 	      cprintf(MAGENTA, "Frame mode: ");
-	      if (doc.HasMember("frameMode")) {
-		if (doc["frameMode"].IsString()) {
-		  frameMode_s=doc["frameMode"].GetString();
+	      //	      if (doc.HasMember("frameMode")) {
+	      if (addJsonHeader.find("frameMode")!= addJsonHeader.end()) { 
+		//	if (doc["frameMode"].IsString()) {
+		frameMode_s=addJsonHeader.at("frameMode");//doc["frameMode"].GetString();
 		  if (frameMode_s == "pedestal"){
 		    fMode=ePedestal;
 		    //isPedestal=1;
-		  } else if (frameMode_s == "newpedestal"){
+		  } else if (frameMode_s == "newPedestal"){
 		    mt->newDataSet(); //resets pedestal  
 		    // cprintf(MAGENTA, "Resetting pedestal\n");
 		    fMode=ePedestal;
@@ -594,8 +725,8 @@ int main(int argc, char *argv[]) {
 		    mt->newDataSet(); //resets pedestal  
 		    // cprintf(MAGENTA, "Resetting pedestal\n");
 		    fMode=ePedestal;
-		    rms=1;
 		    //isPedestal=1;
+		    rms=1;
 		  }
 #ifdef INTERP 
 		  else if (frameMode_s == "flatfield") {
@@ -607,7 +738,7 @@ int main(int argc, char *argv[]) {
 		     cprintf(MAGENTA, "Resetting flatfield\n");
 		     fMode=eFlat;
 		   }
-#endif
+		  //#endif
 		  else {
 		    fMode=eFrame;
 		    //isPedestal=0;
@@ -615,21 +746,23 @@ int main(int argc, char *argv[]) {
 		    fMode=eFrame;
 		    frameMode_s="frame";
 		  }
+		  //}
 	      }
 	      cprintf(MAGENTA, "%s\n" , frameMode_s.c_str());
-	      } else
-		cprintf(RED, "%s\n" , frameMode_s.c_str());
-
 	      mt->setFrameMode(fMode);
 
-	      threshold=0;
+	      // threshold=0;
 	      cprintf(MAGENTA, "Threshold: "); 
-	      if (doc.HasMember("threshold")) {	
-		if (doc["threshold"].IsInt()) {
-		  threshold=doc["threshold"].GetInt();
+	      if (addJsonHeader.find("threshold")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("threshold")) >>threshold;
+		//		threshold=atoi(addJsonHeader.at("threshold").c_str());//doc["frameMode"].GetString();
+	      }
+	      //if (doc.HasMember("threshold")) {	
+	      //if (doc["threshold"].IsInt()) {
+	      //  threshold=doc["threshold"].GetInt();
 	      mt->setThreshold(threshold);
-		}
-	      }	
+	      //	}
+	      // }	
 	      cprintf(MAGENTA, "%d\n", threshold);
 
 	      xmin=0;
@@ -637,40 +770,47 @@ int main(int argc, char *argv[]) {
 	      ymin=0;
 	      ymax=npy;
 	      cprintf(MAGENTA, "ROI: ");
-	      if (doc.HasMember("roi")) {
-		if (doc["roi"].IsArray()) {
-		  if (doc["roi"].Size() > 0 )
-		    if (doc["roi"][0].IsInt())
-		      xmin=doc["roi"][0].GetInt();
 	      
-		  if (doc["roi"].Size() > 1 )
-		    if (doc["roi"][1].IsInt())
-		      xmax=doc["roi"][1].GetInt();
+	      if (addJsonHeader.find("roi")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("roi")) >> xmin >> xmax >> ymin >> ymax ;
+		//  if (doc.HasMember("roi")) {
+		//if (doc["roi"].IsArray()) {
+		// if (doc["roi"].Size() > 0 )
+		//  if (doc["roi"][0].IsInt())
+		   //    xmin=doc["roi"][0].GetInt();
 		  
-		  if (doc["roi"].Size() > 2 )
-		    if (doc["roi"][2].IsInt())
-		      ymin=doc["roi"][2].GetInt();
+		//   if (doc["roi"].Size() > 1 )
+		//     if (doc["roi"][1].IsInt())
+		//       xmax=doc["roi"][1].GetInt();
 
-		  if (doc["roi"].Size() > 3 )
-		    if (doc["roi"][3].IsInt())
-		      ymax=doc["roi"][3].GetInt();
-		}
+		//   if (doc["roi"].Size() > 2 )
+		//     if (doc["roi"][2].IsInt())
+		//       ymin=doc["roi"][2].GetInt();
+		  
+		//   if (doc["roi"].Size() > 3 )
+		//     if (doc["roi"][3].IsInt())
+		//       ymax=doc["roi"][3].GetInt();
+		// }
 	      }
 
 	      cprintf(MAGENTA, "%d %d %d %d\n", xmin, xmax, ymin, ymax);
 	      mt->setROI(xmin, xmax, ymin, ymax);	
-	
-	      if (doc.HasMember("dynamicRange")) {
-		dr=doc["dynamicRange"].GetUint();
+	      if (addJsonHeader.find("dynamicRange")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("dynamicRange")) >> dr ;
 		dr=32;
 	      }
+	      // if (doc.HasMember("dynamicRange")) {
+	      // 	dr=doc["dynamicRange"].GetUint();
+	      // 	dr=32;
+	      // }
 
 	      dMode=eAnalog;
 	      detectorMode_s="analog";
 	      cprintf(MAGENTA, "Detector mode: ");	  
-	      if (doc.HasMember("detectorMode")) {
-		if (doc["detectorMode"].IsString()) {
-		    detectorMode_s=doc["detectorMode"].GetString();
+		if (addJsonHeader.find("detectorMode")!= addJsonHeader.end()) {;
+		  //if (doc.HasMember("detectorMode")) {
+		  //if (doc["detectorMode"].IsString()) {
+		  detectorMode_s=addJsonHeader.at("detectorMode");//=doc["detectorMode"].GetString();
 #ifdef INTERP
 		    if (detectorMode_s == "interpolating"){
 		      dMode=eInterpolating;
@@ -688,13 +828,12 @@ int main(int argc, char *argv[]) {
 		      mt->setInterpolation(NULL);
 #endif
 		    }
+		    // }
+		  
 	      }
 
-		cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
-	      } else
-		cprintf(RED, "%s\n" , frameMode_s.c_str());
-
 	      mt->setDetectorMode(dMode);
+	      cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
 
 	      // cout << "done " << endl;
 
@@ -737,6 +876,21 @@ int main(int argc, char *argv[]) {
 	      // 	mt->setNSubPixels(nSubPixels);
 	      // }
 	      
+	      // threshold=0;
+	      // cprintf(MAGENTA, "Subframes: ");
+	      // subframes=0;
+	      // //isubframe=0;
+	      // insubframe=0;
+	      // subnorm=1;
+	      // f0=0;
+	      // nnsubframe=0;
+	      // if (doc.HasMember("subframes")) {	
+	      // 	if (doc["subframes"].IsInt()) {
+	      // 	  subframes=doc["subframes"].GetInt();
+	      // 	}
+	      // }	
+	      // cprintf(MAGENTA, "%ld\n", subframes);
+
 	      
 	      newFrame=0;
 	      /* zmqsocket->CloseHeaderMessage();*/
@@ -745,7 +899,7 @@ int main(int argc, char *argv[]) {
 
 	    // cout << "file" << endl;
 	    //  cout << "data " << endl;
-	  if (of==NULL && dMode!=eAnalog && fMode!=ePedestal && threshold<=0) {
+	  if (of==NULL) {
 #ifdef WRITE_QUAD
 	    sprintf(ofname,"%s_%ld.clust2",filename.c_str(),fileindex);
 #endif
@@ -762,31 +916,98 @@ int main(int argc, char *argv[]) {
 	  }
 
 	  
+
 	  // cout << "data" << endl;
 	  // get data
 	  // acqIndex = doc["acqIndex"].GetUint64();
-	  frameIndex       = doc["fIndex"].GetUint64();
+
+	  frameIndex       = zHeader.frameIndex;////doc["fIndex"].GetUint64();
+
 	  // subFrameIndex    = doc["expLength"].GetUint();
 
 	  //  bunchId=doc["bunchId"].GetUint();
 	  //  timestamp=doc["timestamp"].GetUint();
-	      packetNumber=doc["packetNumber"].GetUint();
+	  packetNumber=zHeader.packetNumber; //doc["packetNumber"].GetUint();
 	  // cout << acqIndex << " " << frameIndex << " " << subFrameIndex << " "<< bunchId << " " << timestamp << " " << packetNumber << endl;
+	  //cprintf(GREEN, "frame\n");
 	  if (packetNumber>=40) {
 	    //*((int*)buff)=frameIndex;
+	    if (insubframe==0) f0=frameIndex;
 	    memcpy(buff,&frameIndex,sizeof(int));
 	    //length = 
 	    zmqsocket->ReceiveData(0, buff+sizeof(int), size);
 	    mt->pushData(buff);
 	    mt->nextThread();
 	    mt->popFree(buff);
-		cprintf(GREEN, "Frame\n");
+	    insubframe++;
+	    nsubframes=frameIndex+1-f0;
 	  } else {
 	    cprintf(RED, "Incomplete frame: received only %d packet\n", packetNumber);
 	    //length = 
 	    zmqsocket->ReceiveData(0, dummybuff, size);
+	  }
+	  
+
+
+
+	  if (subframes>0 && insubframe>=subframes && fMode==eFrame) {
+	    while (mt->isBusy()) {;}//wait until all data are processed from the queues
+	    detimage=mt->getImage(nnx,nny,nnsx, nnsy);
+	    cprintf(MAGENTA,"Get image!\n");
+	    dout= new int32_t[nnx*nny];
+	    doutf= new float[nnx*nny];
+	    if (subframes>0 && insubframe!=subframes && insubframe>0)
+	      subnorm=((double)subframes)/((double)insubframe);
+	    else
+	      subnorm=1.;
+	    for (int ix=0; ix<nnx*nny; ix++) {
+	      dout[ix]=detimage[ix]*subnorm;
+	      if (dout[ix]<0) dout[ix]=0;
+	      doutf[ix]=dout[ix];
+	    }
+	    sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
+	    
+	    cout << "Writing image to " << ofname << endl;
+
+	    WriteToTiff(doutf,ofname ,nnx, nny); 
+	    nsubframes++;
+	    insubframe=0;
+	    nnsubframe++;
+
+
+	    
+	    //   zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
+	    zHeader.data = true;
+	    zmqsocket2->SendHeader(0,zHeader);
+	    zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
+	    cprintf(GREEN, "Sent subdata\n");
+		
+
+	    if (dout)
+	      delete [] dout;
+	    dout=NULL;
+
+	    if (doutf)
+	      delete [] doutf;
+	    doutf=NULL;
+	    
+	    mt->clearImage();
 	    
 	  }
+
+		 
+
+
+
+
+
+
+	
+	      
+
+
+	  
+	  
 	  iframe++;
 
 	}	// exiting infinite loop

slsDetectorCalibration/multiThreadedAnalogDetector.h

@@ -95,7 +95,7 @@ public:
   virtual int *getImage() {
     return det->getImage();
   }
-  virtual int getImageSize(int &nnx, int &nny, int &ns) {return det->getImageSize(nnx, nny, ns);};
+  virtual int getImageSize(int &nnx, int &nny, int &ns, int &nsy) {return det->getImageSize(nnx, nny, ns, nsy);};
   virtual int getDetectorSize(int &nnx, int &nny) {return det->getDetectorSize(nnx, nny);};
 
   virtual ~threadedAnalogDetector() {StopThread();  delete fifoFree; delete fifoData;}
@@ -123,7 +123,7 @@ public:
      return fifoFree->pop(ptr);
    }
 
-   virtual int isBusy() {return busy;}
+   virtual int isBusy() {if (fifoData->isEmpty() && busy==0) return 0; else return 1;}
    
    //protected:
    /** Implement this method in your subclass with the code you want your thread to run. */
@@ -221,10 +221,10 @@ FILE *getFilePointer(){return det->getFilePointer();};
    }
 
 
-   virtual int setNSubPixels(int ns)  { 
+  virtual int setNSubPixels(int ns, int nsy)  { 
      slsInterpolation *interp=(det)->getInterpolation();
-     if (interp)  return interp->setNSubPixels(ns);
-     else return 1;};
+     if (interp)  interp->setNSubPixels(ns, nsy);
+     return 1;};
 
 
    virtual slsInterpolation *setInterpolation(slsInterpolation *f){
@@ -249,7 +249,7 @@ protected:
    }
 
    void * processData() {
-     busy=1;
+     //  busy=1;
      while (!stop) {
        if (fifoData->isEmpty()) {
 	 busy=0;
@@ -259,6 +259,7 @@ protected:
 	 fifoData->pop(data); //blocking!
 	 det->processData(data);
 	 fifoFree->push(data); 
+	 //busy=0;
        }
      }
      return NULL;
@@ -313,13 +314,13 @@ public:
    
   virtual void newDataSet(){for (int i=0; i<nThreads; i++) dets[i]->newDataSet();};
   
-  virtual int *getImage(int &nnx, int &nny, int &ns) {
+  virtual int *getImage(int &nnx, int &nny, int &ns, int &nsy) {
     int *img;
     // int nnx, nny, ns; 
     // int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny,ns);
+    int nn=dets[0]->getImageSize(nnx, nny,ns, nsy);
     if (image) {
-      delete image;
+      delete [] image;
       image=NULL;
     }
     image=new int[nn];
@@ -362,10 +363,10 @@ public:
 /*        dets[ii]->writeImage(tit); */
 /*      } */
 /* #endif */
-     int nnx, nny, ns;
-     getImage(nnx, nny, ns);
+    int nnx, nny, ns, nsy;
+    getImage(nnx, nny, ns,nsy);
      //int nnx, nny, ns;
-     int nn=dets[0]->getImageSize(nnx, nny, ns);
+    int nn=dets[0]->getImageSize(nnx, nny, ns, nsy);
      float *gm=new float[nn];
      if (gm) {
        for (int ix=0; ix<nn; ix++) {

slsDetectorCalibration/multiThreadedInterpolatingDetector.h

@@ -46,7 +46,7 @@ public:
   };
   
 
-   virtual int setNSubPixels(int ns)  { return (dets[0])->setNSubPixels(ns);};
+   /* virtual int setNSubPixels(int ns)  { return (dets[0])->setNSubPixels(ns);}; */
 
    virtual void resetFlatField() {(dets[0])->resetFlatField();};
    
@@ -69,13 +69,13 @@ public:
 
 
 
-  virtual int *getImage(int &nnx, int &nny, int &ns) {
-    if (getInterpolation()==NULL) return multiThreadedAnalogDetector::getImage(nnx,nny,ns);
+   virtual int *getImage(int &nnx, int &nny, int &nsx, int &nsy) {
+     if (getInterpolation()==NULL) return multiThreadedAnalogDetector::getImage(nnx,nny,nsx, nsy);
     //if one interpolates, the whole image is stored in detector 0;
     int *img;
     // int nnx, nny, ns; 
     // int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny,ns);
+    int nn=dets[0]->getImageSize(nnx, nny,nsx, nsy);
     if (image) {
       delete image;
       image=NULL;

slsDetectorCalibration/pedestalSubtraction.h

@@ -10,7 +10,7 @@ class pedestalSubtraction  {
       \param nn number of samples to calculate the moving average (defaults to 1000)
   */
   pedestalSubtraction (int nn=1000) : stat(nn) {};
-    
+  /* void setPointers(double *me, double *va) {mean=me; var=va; stat.setPointers(mean, var);}; */
     /** virtual destructorr 
      */
     virtual ~pedestalSubtraction() {};

slsDetectorCalibration/singlePhotonDetector.h

@@ -51,14 +51,13 @@ public analogDetector<uint16_t> {
 
   */
 
-
  singlePhotonDetector(slsDetectorData<uint16_t> *d,
 		      int csize=3,
 		      double nsigma=5,
 		      int sign=1,
 		      commonModeSubtraction *cm=NULL,
 		      int nped=1000,
-		      int nd=100, int nnx=-1, int nny=-1, double *gm=NULL, ghostSummation<uint16_t> *gs=NULL) : analogDetector<uint16_t>(d, sign, cm, nped, nnx, nny, gm, gs),   nDark(nd), eventMask(NULL),nSigma (nsigma), eMin(-1), eMax(-1), clusterSize(csize), clusterSizeY(csize), clusters(NULL),   quad(UNDEFINED_QUADRANT), tot(0), quadTot(0)  {
+		      int nd=100, int nnx=-1, int nny=-1, double *gm=NULL, ghostSummation<uint16_t> *gs=NULL) : analogDetector<uint16_t>(d, sign, cm, nped, nnx, nny, gm, gs),   nDark(nd), eventMask(NULL),nSigma (nsigma), eMin(-1), eMax(-1), clusterSize(csize), clusterSizeY(csize), c2(1),c3(1), clusters(NULL),   quad(UNDEFINED_QUADRANT), tot(0), quadTot(0)  {
     
     
     
@@ -66,13 +65,18 @@ public analogDetector<uint16_t> {
     fm=new pthread_mutex_t ;
 
     eventMask=new eventType*[ny];
+    //  val=new double*[ny];
     for (int i=0; i<ny; i++) {
       eventMask[i]=new eventType[nx];
+      // val[i]=new double[nx];
     }
     
     if (ny==1)
       clusterSizeY=1;
 
+  
+    c2=sqrt((clusterSizeY+1)/2* (clusterSize+1)/2);
+    c3=sqrt(clusterSizeY*clusterSize);
     // cluster=new single_photon_hit(clusterSize,clusterSizeY);
     clusters=new single_photon_hit[nx*ny];
    
@@ -100,8 +104,10 @@ public analogDetector<uint16_t> {
     myFile=orig->myFile;
     
     eventMask=new eventType*[ny];
+    // val=new double*[ny];
     for (int i=0; i<ny; i++) {
       eventMask[i]=new eventType[nx];
+      // val[i]=new double[nx];
     }
     eMin=orig->eMin;
     eMax=orig->eMax;
@@ -111,6 +117,10 @@ public analogDetector<uint16_t> {
     clusterSize=orig->clusterSize;
     clusterSizeY=orig->clusterSizeY;
     // cluster=new single_photon_hit(clusterSize,clusterSizeY);
+
+    c2=sqrt((clusterSizeY+1)/2* (clusterSize+1)/2);
+    c3=sqrt(clusterSizeY*clusterSize);
+
     clusters=new single_photon_hit[nx*ny];
 
     // cluster=clusters;
@@ -124,6 +134,8 @@ public analogDetector<uint16_t> {
     gmap=orig->gmap;
     nphTot=0;
     nphFrame=0;
+    nphTot=0;
+    nphFrame=0;
     
   }
   
@@ -196,7 +208,6 @@ public analogDetector<uint16_t> {
       int nn=0;
       double max=0, tl=0, tr=0, bl=0,br=0, v;
       double rms=0;
-      
       int cm=0;
       if (cmSub) cm=1;
 
@@ -218,8 +229,8 @@ public analogDetector<uint16_t> {
 	    cout << "add to common mode?"<< endl;
 	    addToCommonMode(data);
 	  }
-	    for (int iy=ymin; iy<ymax; iy++) {
-	  for (int ix=xmin; ix<xmax; ix++) {
+	    for (iy=ymin; iy<ymax; ++iy) {
+	  for (ix=xmin; ix<xmax; ++ix) {
 	      if (det->isGood(ix,iy)) {
 		val=subtractPedestal(data,ix,iy, cm);
 		
@@ -236,8 +247,8 @@ public analogDetector<uint16_t> {
 	    }
 	  }
 	  
-	  for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+	  for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	    
 	    if (det->isGood(ix,iy)) {
 	      eventMask[iy][ix]=PEDESTAL;
@@ -346,15 +357,20 @@ int *getClusters(char *data,  int *ph=NULL) {
 
  
   int nph=0;
-  double val[ny][nx];
-  int cy=(clusterSizeY+1)/2;
-  int cs=(clusterSize+1)/2;
-  //int ir, ic;
+  // const int cy=(clusterSizeY+1)/2;
+  //const int cs=(clusterSize+1)/2;
 
+  //int ir, ic;
+  eventType ee;
   double max=0, tl=0, tr=0, bl=0,br=0, *v;
   int cm=0;
   int good=1;
-  if (cmSub) cm=1;
+  int ir, ic;
+  // double quadTot;
+  //quadrant quad;
+  double rms;
+  //if (cmSub) cm=1;
+      double val[ny][nx];
   if (ph==NULL)
     ph=image;
   
@@ -366,13 +382,15 @@ int *getClusters(char *data,  int *ph=NULL) {
 
 
   
-  if (cm)
+  if (cmSub) {
     addToCommonMode(data);
+    cm=1;
+  }
 
+  for (iy=ymin; iy<ymax; ++iy) {
+    for (ix=xmin; ix<xmax; ++ix) {
+      if (det->isGood(ix,iy)==0) continue; 
 
-    for (int iy=ymin; iy<ymax; iy++) {
-  for (int ix=xmin; ix<xmax; ix++) {
-      if (det->isGood(ix,iy)) {
 	max=0;
 	tl=0;
 	tr=0;
@@ -384,20 +402,19 @@ int *getClusters(char *data,  int *ph=NULL) {
 	
       
 	
-	eventMask[iy][ix]=PEDESTAL;
+	//eventMask[iy][ix]
+	  ee=PEDESTAL;
 	
 	
-	(clusters+nph)->rms=getPedestalRMS(ix,iy);
+	  rms=getPedestalRMS(ix,iy);
 	// cluster=clusters+nph;
 	
-      
-	for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
-	  for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+	  // cout << ix << " " << iy << endl;
+	for (ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
+	  for (ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
 	    
 	    if ((iy+ir)>=iy && (iy+ir)<ny && (ix+ic)>=ix && (ix+ic)<nx) {
 	      val[iy+ir][ix+ic]=subtractPedestal(data,ix+ic,iy+ir, cm);
-	    }
-	    
 	      v=&(val[iy+ir][ix+ic]);
 	      tot+=*v;
 	      if (ir<=0 && ic<=0)
@@ -412,44 +429,68 @@ int *getClusters(char *data,  int *ph=NULL) {
 		max=*v;
 	      }
 	   
-	    
-	    if (ir==0 && ic==0) {
-	      if (*v<-nSigma*(clusters+nph)->rms)
-		eventMask[iy][ix]=NEGATIVE_PEDESTAL;
-	      else if (*v>nSigma*(clusters+nph)->rms)
-		eventMask[iy][ix]=PHOTON;
 	    }
 	    
+	    
 	  }
 	}
-	if (eventMask[iy][ix]==PHOTON && val[iy][ix]<max) 
+	/* if (ix==50 && iy==50) */
+	/*   cout << id << " " << ix << " " << iy << " " << det->getValue(data,ix,iy)<< " "  << val[iy][ix] << " " << getPedestal(ix,iy) << " " << rms << endl;  */
+	if (val[iy][ix]<-nSigma*rms){
+	  ee=NEGATIVE_PEDESTAL;
 	  continue;    
-	
-	if (bl>=br && bl>=tl && bl>=tr) {
-	  (clusters+nph)->quad=BOTTOM_LEFT;
-	  (clusters+nph)->quadTot=bl;
-	} else if (br>=bl && br>=tl && br>=tr) {
-	  (clusters+nph)->quad=BOTTOM_RIGHT;
-	(clusters+nph)->quadTot=br;
-	} else if (tl>=br && tl>=bl && tl>=tr) {
-	  (clusters+nph)->quad=TOP_LEFT;
-	  (clusters+nph)->quadTot=tl;
-	} else if   (tr>=bl && tr>=tl && tr>=br) {
-	  (clusters+nph)->quad=TOP_RIGHT;
-	  (clusters+nph)->quadTot=tr;
+	} 
+	if (max>nSigma*rms){
+	  //	  cout << "ph1 " << max << " " << nSigma*rms << endl;
+	  ee=PHOTON;
+	  if (val[iy][ix]<max)
+	    continue;
+	}
+	else if (tot>c3*nSigma*rms) {
+	  //	  cout << "ph3 " << tot << " " << c3*nSigma*rms << endl;
+	  ee=PHOTON;
+	}
+#ifndef WRITE_QUAD
+	else {
+#endif
+	    quad=BOTTOM_RIGHT;
+	    quadTot=br;
+	    if (bl>=quadTot) {
+	      quad=BOTTOM_LEFT;
+	      quadTot=bl;
+	    }
+	    if (tl>=quadTot) {
+	      quad=TOP_LEFT;
+	      quadTot=tl;
+	    }
+	    if (tr>=quadTot) {
+	      quad=TOP_RIGHT;
+	      quadTot=tr;
 	    }
 	    
-	if (max>nSigma*(clusters+nph)->rms || tot>sqrt(clusterSizeY*clusterSize)*nSigma*(clusters+nph)->rms || ((clusters+nph)->quadTot)>sqrt(cy*cs)*nSigma*(clusters+nph)->rms) {
-	  if (val[iy][ix]>=max) {
-	  eventMask[iy][ix]=PHOTON_MAX;
+	    if (quadTot>c2*nSigma*rms) {
+	      //   cout << "ph2 " << quadTot << " " << c2*nSigma*rms << endl;
+	      ee=PHOTON;
+	    }
+	  
+#ifndef WRITE_QUAD
+	}
+#endif
+	if (ee==PHOTON && val[iy][ix]==max) {
+	  ee=PHOTON_MAX;
+	  // cout << "**" <<id<< " " << iframe << " "  << nDark << " "   << ix << " " << iy << " " << rms << " " << max << " " << quadTot << " " << tot << endl;
       	  (clusters+nph)->tot=tot;
       	  (clusters+nph)->x=ix;
       	  (clusters+nph)->y=iy;
+      	  (clusters+nph)->quad=quad;
+      	  (clusters+nph)->quadTot=quadTot;
+      	  //(clusters+nph)->rms=rms;
       	  //	  (clusters+nph)->iframe=det->getFrameNumber(data);
       	  // cout << det->getFrameNumber(data) << " " << (clusters+nph)->iframe << endl;
-	  (clusters+nph)->ped=getPedestal(ix,iy,0);
-	  for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
-	    for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+      	  //  (clusters+nph)->ped=getPedestal(ix,iy,0);
+	  for (ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
+	    for (ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+	      if ((iy+ir)>=0  && (iy+ir)<ny &&  (ix+ic)>=0 && (ix+ic)<nx) 
 		(clusters+nph)->set_data(val[iy+ir][ix+ic],ic,ir);
 	    }
       }
@@ -462,19 +503,19 @@ int *getClusters(char *data,  int *ph=NULL) {
       }
       
       
-	  } else {
-	    eventMask[iy][ix]=PHOTON;
-	  }
-	} else if (eventMask[iy][ix]==PEDESTAL) {
+	} else if (ee==PEDESTAL) {
 	  addToPedestal(data,ix,iy,cm);
+	} /*else {
+	    eventMask[iy][ix]=PHOTON;
+	    }*/
+	//eventMask[iy][ix]=ee;
   }
-      }
-    }
-  }
+}
+  
   nphFrame=nph;
   nphTot+=nph;
   //cout << nphFrame << endl;
-  //  cout <<"**********************************"<< det->getFrameNumber(data) << " " << nphFrame << endl;
+  //cout <<id << " **********************************"<< iframe << " " << det->getFrameNumber(data) << " " << nphFrame << endl;
   writeClusters(det->getFrameNumber(data));
   return  image;
   
@@ -561,13 +602,20 @@ int *getClusters(char *data,  int *ph=NULL) {
 */
 
     static void writeClusters(FILE *f, single_photon_hit *cl, int nph, int fn=0){
-  
-/* #ifndef OLDFORMAT   */
-/*       if (fwrite((void*)&fn, 1,  sizeof(int), f))  */
-/* 	if (fwrite((void*)&nph, 1,  sizeof(int), f))  */
-/* #endif    */
+      if (nph>0) {
+#ifndef OLDFORMAT   
+	if (fwrite((void*)&fn, 1,  sizeof(int), f))  
+	  if (fwrite((void*)&nph, 1,  sizeof(int), f))  
+#endif    
 	    for (int i=0; i<nph; i++) (cl+i)->write(f);
-};
+      }
+    };
+      
+
+
+
+
+
  void writeClusters(FILE *f, int fn=0){
    writeClusters(f,clusters,nphFrame, fn);
   //for (int i=0; i<nphFrame; i++) 
@@ -623,6 +671,7 @@ int *getClusters(char *data,  int *ph=NULL) {
     double eMin, eMax;
     int clusterSize; /**< cluster size in the x direction */
     int clusterSizeY; /**< cluster size in the y direction i.e. 1 for strips, clusterSize for pixels */
+    double c2, c3;
     //  single_photon_hit *cluster; /**< single photon hit data structure */
     single_photon_hit *clusters; /**< single photon hit data structure */
     quadrant quad; /**< quadrant where the photon is located */
@@ -631,6 +680,7 @@ int *getClusters(char *data,  int *ph=NULL) {
     int nphTot;
     int nphFrame;
 
+    //    double **val;
     pthread_mutex_t *fm;
 
     };

slsDetectorCalibration/single_photon_hit.h

@@ -36,16 +36,14 @@ class single_photon_hit {
       \param myFile file descriptor
   */
   size_t write(FILE *myFile) {
-    //fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
-    
-    // if (fwrite((void*)this, 1, sizeof(int)+2*sizeof(int16_t), myFile))
-    //#ifdef OLDFORMAT 
+    //fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile);  // if (fwrite((void*)this, 1, sizeof(int)+2*sizeof(int16_t), myFile))
+#ifdef OLDFORMAT 
     if (fwrite((void*)&iframe, 1,  sizeof(int), myFile)) {};
-      //#endif  
+#endif  
 #ifndef WRITE_QUAD
       //printf("no quad ");
-    if (fwrite((void*)&x, 2,  sizeof(int16_t), myFile)) 
-      return fwrite((void*)data, 1, dx*dy*sizeof(int), myFile);
+    if (fwrite((void*)&x, sizeof(int16_t), 2, myFile)) 
+      return fwrite((void*)data, sizeof(int), dx*dy, myFile);
 #endif 
 #ifdef WRITE_QUAD
     //  printf("quad ");
@@ -91,8 +89,8 @@ class single_photon_hit {
     default:
       ;
     }
-    if (fwrite((void*)&x, 2,  sizeof(int16_t), myFile)) 
-      return fwrite((void*)qq, 1, 4*sizeof(int), myFile);
+     if (fwrite((void*)&x,   sizeof(int16_t), 2, myFile)) 
+      return fwrite((void*)qq, sizeof(int), 4, myFile);
 #endif
     return 0;
   };   
@@ -104,19 +102,19 @@ class single_photon_hit {
   size_t read(FILE *myFile) {
     //fread((void*)this, 1,  3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
     
-    //#ifdef OLDFORMAT 
+#ifdef OLDFORMAT 
     if (fread((void*)&iframe, 1,  sizeof(int), myFile))  {}
-      //#endif   
+#endif   
 #ifndef WRITE_QUAD
       // printf( "no quad \n");
-    if (fread((void*)&x, 2,  sizeof(int16_t), myFile))  
-      return fread((void*)data, 1, dx*dy*sizeof(int), myFile);
+    if (fread((void*)&x,  sizeof(int16_t),2, myFile))  
+      return fread((void*)data, sizeof(int), dx*dy,myFile);
 #endif 
 #ifdef WRITE_QUAD
     int qq[4];
-    // printf( "quad \n");
-    if (fread((void*)&x, 2,  sizeof(int16_t), myFile))  
-      if (fread((void*)qq, 1, 4*sizeof(int), myFile)) {
+    printf( "quad \n");
+    if (fread((void*)&x, sizeof(int16_t), 2,  myFile))  
+      if (fread((void*)qq, sizeof(int), 4, myFile)) {
 
 	quad=TOP_RIGHT;
 	/*	int mm=qq[0]; */
@@ -216,7 +214,6 @@ class single_photon_hit {
     for (int iy=0; iy<dy; iy++) {
       for (int ix=0; ix<dx; ix++) {
 	printf("%d \t",data[ix+iy*dx]);
-
       }
     printf("\n");
     }
@@ -246,8 +243,6 @@ class single_photon_hit {
   int *get_cluster() {return data;};
 
   int	iframe; 	        /**< frame number */
-  int16_t 	x; 			/**< x-coordinate of the center of hit */
-  int16_t	y; 			/**< x-coordinate of the center of hit */
   double	rms; 		/**< noise of central pixel l -- at some point it can be removed*/
   double 	ped; 		/**< pedestal of the central pixel -- at some point it can be removed*/
    double tot; /**< sum of the 3x3 cluster */
@@ -255,6 +250,8 @@ class single_photon_hit {
    double quadTot; /**< sum of the maximum 2x2cluster */ 
   int dx;	                /**< size of data cluster in x */
   int dy;                 /**< size of data cluster in y */ 
+  int16_t 	x; 			/**< x-coordinate of the center of hit */
+  int16_t	y; 			/**< x-coordinate of the center of hit */ 
   int *data;		        /**< pointer to data */
 };
 

slsDetectorGui/CMakeLists.txt

@@ -88,6 +88,7 @@ target_include_directories(slsDetectorGui PUBLIC
 )
 
 target_link_libraries(slsDetectorGui PUBLIC
+    slsProjectWarnings
     slsDetectorShared
     ${QT_QTCORE_LIBRARIES}
     ${QT_QTGUI_LIBRARIES}
@@ -103,10 +104,10 @@ set_target_properties(slsDetectorGui PROPERTIES
 )
 
 install(TARGETS slsDetectorGui
-    EXPORT "${TARGETS_EXPORT_NAME}"
+    # EXPORT "${TARGETS_EXPORT_NAME}"
     RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}
-    LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
+    # LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
+    # ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
+    # PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
 )
 

slsDetectorGui/forms/form_cloneplot.ui

@@ -55,6 +55,149 @@
      </widget>
     </item>
     <item row="1" column="0">
+     <widget class="QLabel" name="lblCompleteImage">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>40</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>16777215</height>
+       </size>
+      </property>
+      <property name="palette">
+       <palette>
+        <active>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>0</red>
+            <green>150</green>
+            <blue>110</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </active>
+        <inactive>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>0</red>
+            <green>150</green>
+            <blue>110</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </inactive>
+        <disabled>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>139</red>
+            <green>142</green>
+            <blue>142</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </disabled>
+       </palette>
+      </property>
+      <property name="text">
+       <string>Complete Image</string>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="1">
+     <widget class="QLabel" name="lblInCompleteImage">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>40</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>16777215</height>
+       </size>
+      </property>
+      <property name="palette">
+       <palette>
+        <active>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>255</red>
+            <green>0</green>
+            <blue>0</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </active>
+        <inactive>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>255</red>
+            <green>0</green>
+            <blue>0</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </inactive>
+        <disabled>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>139</red>
+            <green>142</green>
+            <blue>142</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </disabled>
+       </palette>
+      </property>
+      <property name="text">
+       <string>Missing Packets</string>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="2">
+     <spacer name="horizontalSpacer_3">
+      <property name="orientation">
+       <enum>Qt::Horizontal</enum>
+      </property>
+      <property name="sizeHint" stdset="0">
+       <size>
+        <width>117</width>
+        <height>20</height>
+       </size>
+      </property>
+     </spacer>
+    </item>
+    <item row="2" column="0" colspan="3">
      <widget class="QWidget" name="widgetStatistics" native="true">
       <property name="sizePolicy">
        <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -241,7 +384,7 @@
      <x>0</x>
      <y>0</y>
      <width>376</width>
-     <height>28</height>
+     <height>27</height>
     </rect>
    </property>
    <widget class="QMenu" name="menuSave">

slsDetectorGui/forms/form_plot.ui

@@ -19,47 +19,8 @@
   <property name="windowTitle">
    <string>Form</string>
   </property>
-  <layout class="QGridLayout" name="layout">
-   <property name="margin">
-    <number>6</number>
-   </property>
-   <property name="spacing">
-    <number>0</number>
-   </property>
-   <item row="0" column="0">
-    <widget class="QGroupBox" name="boxPlot">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Sans Serif</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="title">
-      <string>Sample Plot</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-     <property name="flat">
-      <bool>false</bool>
-     </property>
-     <layout class="QGridLayout" name="plotLayout">
-      <property name="margin">
-       <number>9</number>
-      </property>
-      <property name="spacing">
-       <number>0</number>
-      </property>
-     </layout>
-    </widget>
-   </item>
-   <item row="1" column="0">
+  <layout class="QGridLayout" name="gridLayout">
+   <item row="2" column="0" colspan="4">
     <widget class="QWidget" name="widgetStatistics" native="true">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -86,73 +47,6 @@
       <property name="spacing">
        <number>0</number>
       </property>
-      <item row="0" column="6">
-       <widget class="QLabel" name="lblSum">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="minimumSize">
-         <size>
-          <width>40</width>
-          <height>0</height>
-         </size>
-        </property>
-        <property name="maximumSize">
-         <size>
-          <width>40</width>
-          <height>16777215</height>
-         </size>
-        </property>
-        <property name="text">
-         <string>Sum: </string>
-        </property>
-        <property name="alignment">
-         <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
-        </property>
-       </widget>
-      </item>
-      <item row="0" column="2">
-       <spacer name="horizontalSpacer">
-        <property name="orientation">
-         <enum>Qt::Horizontal</enum>
-        </property>
-        <property name="sizeHint" stdset="0">
-         <size>
-          <width>40</width>
-          <height>20</height>
-         </size>
-        </property>
-       </spacer>
-      </item>
-      <item row="0" column="1">
-       <widget class="QLabel" name="lblMinDisp">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="text">
-         <string>-</string>
-        </property>
-       </widget>
-      </item>
-      <item row="0" column="4">
-       <widget class="QLabel" name="lblMaxDisp">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="text">
-         <string>-</string>
-        </property>
-       </widget>
-      </item>
       <item row="0" column="3">
        <widget class="QLabel" name="lblMax">
         <property name="sizePolicy">
@@ -181,8 +75,8 @@
         </property>
        </widget>
       </item>
-      <item row="0" column="7">
-       <widget class="QLabel" name="lblSumDisp">
+      <item row="0" column="1">
+       <widget class="QLabel" name="lblMinDisp">
         <property name="sizePolicy">
          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
           <horstretch>0</horstretch>
@@ -194,6 +88,19 @@
         </property>
        </widget>
       </item>
+      <item row="0" column="2">
+       <spacer name="horizontalSpacer">
+        <property name="orientation">
+         <enum>Qt::Horizontal</enum>
+        </property>
+        <property name="sizeHint" stdset="0">
+         <size>
+          <width>40</width>
+          <height>20</height>
+         </size>
+        </property>
+       </spacer>
+      </item>
       <item row="0" column="0">
        <widget class="QLabel" name="lblMin">
         <property name="sizePolicy">
@@ -222,6 +129,32 @@
         </property>
        </widget>
       </item>
+      <item row="0" column="4">
+       <widget class="QLabel" name="lblMaxDisp">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="text">
+         <string>-</string>
+        </property>
+       </widget>
+      </item>
+      <item row="0" column="7">
+       <widget class="QLabel" name="lblSumDisp">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="text">
+         <string>-</string>
+        </property>
+       </widget>
+      </item>
       <item row="0" column="5">
        <spacer name="horizontalSpacer_2">
         <property name="orientation">
@@ -235,9 +168,213 @@
         </property>
        </spacer>
       </item>
+      <item row="0" column="6">
+       <widget class="QLabel" name="lblSum">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="minimumSize">
+         <size>
+          <width>40</width>
+          <height>0</height>
+         </size>
+        </property>
+        <property name="maximumSize">
+         <size>
+          <width>40</width>
+          <height>16777215</height>
+         </size>
+        </property>
+        <property name="text">
+         <string>Sum: </string>
+        </property>
+        <property name="alignment">
+         <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+        </property>
+       </widget>
+      </item>
      </layout>
     </widget>
    </item>
+   <item row="1" column="3">
+    <spacer name="horizontalSpacer_3">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>419</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="0" column="0" colspan="4">
+    <widget class="QGroupBox" name="boxPlot">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="font">
+      <font>
+       <family>Sans Serif</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="title">
+      <string>Sample Plot</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+     <property name="flat">
+      <bool>true</bool>
+     </property>
+     <layout class="QGridLayout" name="plotLayout">
+      <property name="margin">
+       <number>9</number>
+      </property>
+      <property name="spacing">
+       <number>0</number>
+      </property>
+     </layout>
+    </widget>
+   </item>
+   <item row="1" column="2">
+    <widget class="QLabel" name="lblInCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>40</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Missing Packets</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
+   <item row="1" column="1">
+    <widget class="QLabel" name="lblCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>40</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Complete Image</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <resources/>

slsDetectorGui/forms/form_tab_advanced.ui

@@ -1066,239 +1066,6 @@
        <string>Acquisition</string>
       </attribute>
       <layout class="QGridLayout" name="gridLayout_6">
-       <item row="1" column="4">
-        <spacer name="horizontalSpacer_3">
-         <property name="orientation">
-          <enum>Qt::Horizontal</enum>
-         </property>
-         <property name="sizeType">
-          <enum>QSizePolicy::Expanding</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>20</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="0" column="0">
-        <widget class="QLabel" name="lblNumStoragecells">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="text">
-          <string>Number of  Storage cells:</string>
-         </property>
-        </widget>
-       </item>
-       <item row="0" column="1">
-        <spacer name="horizontalSpacer_8">
-         <property name="orientation">
-          <enum>Qt::Horizontal</enum>
-         </property>
-         <property name="sizeType">
-          <enum>QSizePolicy::Fixed</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>10</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="4" column="2">
-        <spacer name="verticalSpacer_2">
-         <property name="orientation">
-          <enum>Qt::Vertical</enum>
-         </property>
-         <property name="sizeType">
-          <enum>QSizePolicy::Expanding</enum>
-         </property>
-         <property name="sizeHint" stdset="0">
-          <size>
-           <width>20</width>
-           <height>20</height>
-          </size>
-         </property>
-        </spacer>
-       </item>
-       <item row="0" column="2" colspan="2">
-        <widget class="QSpinBox" name="spinNumStoragecells">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>0</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="toolTip">
-          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-         </property>
-         <property name="statusTip">
-          <string/>
-         </property>
-         <property name="whatsThis">
-          <string/>
-         </property>
-         <property name="alignment">
-          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
-         </property>
-         <property name="keyboardTracking">
-          <bool>false</bool>
-         </property>
-         <property name="suffix">
-          <string/>
-         </property>
-         <property name="minimum">
-          <number>-1</number>
-         </property>
-         <property name="maximum">
-          <number>15</number>
-         </property>
-         <property name="value">
-          <number>0</number>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="2">
-        <widget class="QDoubleSpinBox" name="spinSubExpTime">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>0</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="toolTip">
-          <string>&lt;nobr&gt;
-Exposure Time of a sub frame. Only for Eiger in 32 bit mode
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
- #subexptime#
-&lt;/nobr&gt;</string>
-         </property>
-         <property name="alignment">
-          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
-         </property>
-         <property name="keyboardTracking">
-          <bool>false</bool>
-         </property>
-         <property name="decimals">
-          <number>9</number>
-         </property>
-         <property name="minimum">
-          <double>-1.000000000000000</double>
-         </property>
-         <property name="maximum">
-          <double>2000000000.000000000000000</double>
-         </property>
-         <property name="value">
-          <double>1.000000000000000</double>
-         </property>
-        </widget>
-       </item>
-       <item row="2" column="0">
-        <widget class="QLabel" name="lblSubDeadTime">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="toolTip">
-          <string>&lt;nobr&gt;
-Dead time between sub frames. Only for Eiger in 32 bit mode.
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
-Default value is 0. A value less than the required minimum is ignored.
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
- #subdeadtime#
-&lt;/nobr&gt;</string>
-         </property>
-         <property name="text">
-          <string>Sub Frame Dead Time:</string>
-         </property>
-        </widget>
-       </item>
-       <item row="2" column="2">
-        <widget class="QDoubleSpinBox" name="spinSubDeadTime">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="sizePolicy">
-          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-           <horstretch>0</horstretch>
-           <verstretch>0</verstretch>
-          </sizepolicy>
-         </property>
-         <property name="minimumSize">
-          <size>
-           <width>0</width>
-           <height>25</height>
-          </size>
-         </property>
-         <property name="toolTip">
-          <string>&lt;nobr&gt;
-Period between sub frames. Only for Eiger in 32 bit mode.
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
-Default value is 0. A value less than the required minimum is ignored.
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
- #subperiod#
-&lt;/nobr&gt;</string>
-         </property>
-         <property name="alignment">
-          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
-         </property>
-         <property name="keyboardTracking">
-          <bool>false</bool>
-         </property>
-         <property name="decimals">
-          <number>9</number>
-         </property>
-         <property name="minimum">
-          <double>-1.000000000000000</double>
-         </property>
-         <property name="maximum">
-          <double>2000000000.000000000000000</double>
-         </property>
-         <property name="value">
-          <double>1.000000000000000</double>
-         </property>
-        </widget>
-       </item>
-       <item row="1" column="0">
-        <widget class="QLabel" name="lblSubExpTime">
-         <property name="enabled">
-          <bool>false</bool>
-         </property>
-         <property name="toolTip">
-          <string>&lt;nobr&gt;
-Exposure Time of a sub frame. Only for Eiger in 32 bit mode
-&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
- #subexptime#
-&lt;/nobr&gt;</string>
-         </property>
-         <property name="text">
-          <string>Sub Frame Exposure Time:</string>
-         </property>
-        </widget>
-       </item>
        <item row="2" column="3">
         <widget class="QComboBox" name="comboSubDeadTimeUnit">
          <property name="enabled">
@@ -1425,6 +1192,98 @@ Exposure Time of a sub frame. Only for Eiger in 32 bit mode
          </item>
         </widget>
        </item>
+       <item row="0" column="0">
+        <widget class="QLabel" name="lblNumStoragecells">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="text">
+          <string>Number of  Storage cells:</string>
+         </property>
+        </widget>
+       </item>
+       <item row="0" column="1">
+        <spacer name="horizontalSpacer_8">
+         <property name="orientation">
+          <enum>Qt::Horizontal</enum>
+         </property>
+         <property name="sizeType">
+          <enum>QSizePolicy::Fixed</enum>
+         </property>
+         <property name="sizeHint" stdset="0">
+          <size>
+           <width>10</width>
+           <height>20</height>
+          </size>
+         </property>
+        </spacer>
+       </item>
+       <item row="2" column="2">
+        <widget class="QDoubleSpinBox" name="spinSubDeadTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;nobr&gt;
+Period between sub frames. Only for Eiger in 32 bit mode.
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+Default value is 0. A value less than the required minimum is ignored.
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+ #subperiod#
+&lt;/nobr&gt;</string>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="decimals">
+          <number>9</number>
+         </property>
+         <property name="minimum">
+          <double>-1.000000000000000</double>
+         </property>
+         <property name="maximum">
+          <double>2000000000.000000000000000</double>
+         </property>
+         <property name="value">
+          <double>1.000000000000000</double>
+         </property>
+        </widget>
+       </item>
+       <item row="1" column="0">
+        <widget class="QLabel" name="lblSubExpTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;nobr&gt;
+Exposure Time of a sub frame. Only for Eiger in 32 bit mode
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+ #subexptime#
+&lt;/nobr&gt;</string>
+         </property>
+         <property name="text">
+          <string>Sub Frame Exposure Time:</string>
+         </property>
+        </widget>
+       </item>
        <item row="3" column="0">
         <widget class="QLabel" name="lblDiscardBits">
          <property name="enabled">
@@ -1490,6 +1349,428 @@ Default value is 0. A value less than the required minimum is ignored.
          </property>
         </widget>
        </item>
+       <item row="1" column="4">
+        <spacer name="horizontalSpacer_3">
+         <property name="orientation">
+          <enum>Qt::Horizontal</enum>
+         </property>
+         <property name="sizeType">
+          <enum>QSizePolicy::Expanding</enum>
+         </property>
+         <property name="sizeHint" stdset="0">
+          <size>
+           <width>20</width>
+           <height>20</height>
+          </size>
+         </property>
+        </spacer>
+       </item>
+       <item row="8" column="2">
+        <spacer name="verticalSpacer_2">
+         <property name="orientation">
+          <enum>Qt::Vertical</enum>
+         </property>
+         <property name="sizeType">
+          <enum>QSizePolicy::Expanding</enum>
+         </property>
+         <property name="sizeHint" stdset="0">
+          <size>
+           <width>20</width>
+           <height>20</height>
+          </size>
+         </property>
+        </spacer>
+       </item>
+       <item row="0" column="2" colspan="2">
+        <widget class="QSpinBox" name="spinNumStoragecells">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="statusTip">
+          <string/>
+         </property>
+         <property name="whatsThis">
+          <string/>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="suffix">
+          <string/>
+         </property>
+         <property name="minimum">
+          <number>-1</number>
+         </property>
+         <property name="maximum">
+          <number>15</number>
+         </property>
+         <property name="value">
+          <number>0</number>
+         </property>
+        </widget>
+       </item>
+       <item row="1" column="2">
+        <widget class="QDoubleSpinBox" name="spinSubExpTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;nobr&gt;
+Exposure Time of a sub frame. Only for Eiger in 32 bit mode
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+ #subexptime#
+&lt;/nobr&gt;</string>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="decimals">
+          <number>9</number>
+         </property>
+         <property name="minimum">
+          <double>-1.000000000000000</double>
+         </property>
+         <property name="maximum">
+          <double>2000000000.000000000000000</double>
+         </property>
+         <property name="value">
+          <double>1.000000000000000</double>
+         </property>
+        </widget>
+       </item>
+       <item row="2" column="0">
+        <widget class="QLabel" name="lblSubDeadTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;nobr&gt;
+Dead time between sub frames. Only for Eiger in 32 bit mode.
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+Default value is 0. A value less than the required minimum is ignored.
+&lt;/nobr&gt;&lt;br&gt;&lt;nobr&gt;
+ #subdeadtime#
+&lt;/nobr&gt;</string>
+         </property>
+         <property name="text">
+          <string>Sub Frame Dead Time:</string>
+         </property>
+        </widget>
+       </item>
+       <item row="5" column="3">
+        <widget class="QComboBox" name="comboExpTimeUnit">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Exposure Time of a corresonding gate signal index. &lt;br/&gt;#exptime1# &lt;/p&gt;&lt;p&gt;#exptime2#&lt;/p&gt;&lt;p&gt;#exptime3#  &lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="layoutDirection">
+          <enum>Qt::LeftToRight</enum>
+         </property>
+         <property name="currentIndex">
+          <number>2</number>
+         </property>
+         <item>
+          <property name="text">
+           <string>hr</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>min</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>s</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>ms</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>us</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>ns</string>
+          </property>
+         </item>
+        </widget>
+       </item>
+       <item row="5" column="2">
+        <widget class="QDoubleSpinBox" name="spinExpTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Exposure Time of a corresonding gate signal index. &lt;br/&gt;#exptime1# &lt;/p&gt;&lt;p&gt;#exptime2#&lt;/p&gt;&lt;p&gt;#exptime3#  &lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="decimals">
+          <number>9</number>
+         </property>
+         <property name="minimum">
+          <double>-1.000000000000000</double>
+         </property>
+         <property name="maximum">
+          <double>2000000000.000000000000000</double>
+         </property>
+         <property name="value">
+          <double>1.000000000000000</double>
+         </property>
+        </widget>
+       </item>
+       <item row="4" column="2">
+        <widget class="QSpinBox" name="spinGateIndex">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Gate index. It will get exposure time and gate delay for corresponding gate signal.&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="statusTip">
+          <string/>
+         </property>
+         <property name="whatsThis">
+          <string/>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="suffix">
+          <string/>
+         </property>
+         <property name="minimum">
+          <number>0</number>
+         </property>
+         <property name="maximum">
+          <number>3</number>
+         </property>
+         <property name="value">
+          <number>0</number>
+         </property>
+        </widget>
+       </item>
+       <item row="6" column="0">
+        <widget class="QLabel" name="lblGateDelay">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="text">
+          <string>Gate Delay:</string>
+         </property>
+        </widget>
+       </item>
+       <item row="6" column="2">
+        <widget class="QDoubleSpinBox" name="spinGateDelay">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Gate Delay of a corresonding gate signal index. &lt;br/&gt;#gatedelay1# &lt;/p&gt;&lt;p&gt;#gatedelay2#&lt;/p&gt;&lt;p&gt;#gatedelay3#  &lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="alignment">
+          <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+         </property>
+         <property name="keyboardTracking">
+          <bool>false</bool>
+         </property>
+         <property name="decimals">
+          <number>9</number>
+         </property>
+         <property name="minimum">
+          <double>-1.000000000000000</double>
+         </property>
+         <property name="maximum">
+          <double>2000000000.000000000000000</double>
+         </property>
+         <property name="value">
+          <double>1.000000000000000</double>
+         </property>
+        </widget>
+       </item>
+       <item row="6" column="3">
+        <widget class="QComboBox" name="comboGateDelayUnit">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="sizePolicy">
+          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+           <horstretch>0</horstretch>
+           <verstretch>0</verstretch>
+          </sizepolicy>
+         </property>
+         <property name="minimumSize">
+          <size>
+           <width>0</width>
+           <height>25</height>
+          </size>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Gate Delay of a corresonding gate signal index. &lt;br/&gt;#gatedelay1# &lt;/p&gt;&lt;p&gt;#gatedelay2#&lt;/p&gt;&lt;p&gt;#gatedelay3#  &lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="layoutDirection">
+          <enum>Qt::LeftToRight</enum>
+         </property>
+         <property name="currentIndex">
+          <number>2</number>
+         </property>
+         <item>
+          <property name="text">
+           <string>hr</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>min</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>s</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>ms</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>us</string>
+          </property>
+         </item>
+         <item>
+          <property name="text">
+           <string>ns</string>
+          </property>
+         </item>
+        </widget>
+       </item>
+       <item row="5" column="0">
+        <widget class="QLabel" name="lblExpTime">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="text">
+          <string>Expososure Time:</string>
+         </property>
+        </widget>
+       </item>
+       <item row="4" column="0">
+        <widget class="QLabel" name="lblGateIndex">
+         <property name="enabled">
+          <bool>false</bool>
+         </property>
+         <property name="toolTip">
+          <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of additional storage cells. For Jungfrau only. &lt;/p&gt;&lt;p&gt;Default: 0. &lt;/p&gt;&lt;p&gt;Number of Images received: #frames * #triggers * (#storagecells+1) &lt;/p&gt;&lt;p&gt; #storagecells#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+         </property>
+         <property name="text">
+          <string>Gate Index:</string>
+         </property>
+        </widget>
+       </item>
       </layout>
      </widget>
     </widget>

slsDetectorGui/forms/form_tab_measurement.ui

@@ -409,7 +409,7 @@
     <widget class="QFrame" name="frameTimeResolved">
      <property name="minimumSize">
       <size>
-       <width>400</width>
+       <width>410</width>
        <height>0</height>
       </size>
      </property>
@@ -432,6 +432,77 @@
       <property name="verticalSpacing">
        <number>4</number>
       </property>
+      <item row="5" column="0">
+       <widget class="QStackedWidget" name="stackedLblTriggerBurst">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="minimumSize">
+         <size>
+          <width>171</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="maximumSize">
+         <size>
+          <width>171</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="currentIndex">
+         <number>0</number>
+        </property>
+        <widget class="QWidget" name="pageLblTrigger">
+         <layout class="QGridLayout" name="gridLblTrigger">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QLabel" name="lblNumTriggers">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of Triggers to be expected.&lt;/p&gt;&lt;p&gt; #triggers#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="text">
+             <string>Number of Triggers:</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+        <widget class="QWidget" name="pageLblBurst">
+         <layout class="QGridLayout" name="gridLblBurst">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QLabel" name="lblNumBursts">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of Triggers to be expected.&lt;/p&gt;&lt;p&gt; #triggers#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="text">
+             <string>Number of Bursts:</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+       </widget>
+      </item>
       <item row="4" column="3">
        <widget class="QComboBox" name="comboPeriodUnit">
         <property name="enabled">
@@ -501,53 +572,6 @@ Frame period between exposures.
         </property>
        </widget>
       </item>
-      <item row="7" column="2" colspan="2">
-       <widget class="QSpinBox" name="spinNumSamples">
-        <property name="enabled">
-         <bool>false</bool>
-        </property>
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="minimumSize">
-         <size>
-          <width>0</width>
-          <height>25</height>
-         </size>
-        </property>
-        <property name="toolTip">
-         <string>Number of Triggers to be expected.
- #triggers#</string>
-        </property>
-        <property name="statusTip">
-         <string/>
-        </property>
-        <property name="whatsThis">
-         <string/>
-        </property>
-        <property name="alignment">
-         <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
-        </property>
-        <property name="keyboardTracking">
-         <bool>false</bool>
-        </property>
-        <property name="suffix">
-         <string/>
-        </property>
-        <property name="minimum">
-         <number>-1</number>
-        </property>
-        <property name="maximum">
-         <number>2000000000</number>
-        </property>
-        <property name="value">
-         <number>1</number>
-        </property>
-       </widget>
-      </item>
       <item row="1" column="2" colspan="2">
        <widget class="QSpinBox" name="spinNumMeasurements">
         <property name="sizePolicy">
@@ -594,25 +618,17 @@ Frame period between exposures.
       </item>
       <item row="1" column="0">
        <widget class="QLabel" name="label_5">
+        <property name="minimumSize">
+         <size>
+          <width>175</width>
+          <height>0</height>
+         </size>
+        </property>
         <property name="text">
          <string>Number of Measurements:</string>
         </property>
        </widget>
       </item>
-      <item row="7" column="0">
-       <widget class="QLabel" name="lblNumSamples">
-        <property name="enabled">
-         <bool>false</bool>
-        </property>
-        <property name="toolTip">
-         <string>Number of Triggers to be expected.
- #triggers#</string>
-        </property>
-        <property name="text">
-         <string>Number of Samples:</string>
-        </property>
-       </widget>
-      </item>
       <item row="0" column="2" colspan="2">
        <widget class="QComboBox" name="comboTimingMode">
         <property name="sizePolicy">
@@ -651,6 +667,11 @@ Frame period between exposures.
           <string>Burst Trigger</string>
          </property>
         </item>
+        <item>
+         <property name="text">
+          <string>Trigger Gated</string>
+         </property>
+        </item>
        </widget>
       </item>
       <item row="3" column="2">
@@ -910,77 +931,6 @@ Frame period between exposures.
         </property>
        </spacer>
       </item>
-      <item row="5" column="0">
-       <widget class="QStackedWidget" name="stackedLblTriggerBurst">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="minimumSize">
-         <size>
-          <width>171</width>
-          <height>32</height>
-         </size>
-        </property>
-        <property name="maximumSize">
-         <size>
-          <width>171</width>
-          <height>32</height>
-         </size>
-        </property>
-        <property name="currentIndex">
-         <number>0</number>
-        </property>
-        <widget class="QWidget" name="pageLblTrigger">
-         <layout class="QGridLayout" name="gridLblTrigger">
-          <property name="margin">
-           <number>0</number>
-          </property>
-          <property name="spacing">
-           <number>0</number>
-          </property>
-          <item row="0" column="0">
-           <widget class="QLabel" name="lblNumTriggers">
-            <property name="enabled">
-             <bool>false</bool>
-            </property>
-            <property name="toolTip">
-             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of Triggers to be expected.&lt;/p&gt;&lt;p&gt; #triggers#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-            </property>
-            <property name="text">
-             <string>Number of Triggers:</string>
-            </property>
-           </widget>
-          </item>
-         </layout>
-        </widget>
-        <widget class="QWidget" name="pageLblBurst">
-         <layout class="QGridLayout" name="gridLblBurst">
-          <property name="margin">
-           <number>0</number>
-          </property>
-          <property name="spacing">
-           <number>0</number>
-          </property>
-          <item row="0" column="0">
-           <widget class="QLabel" name="lblNumBursts">
-            <property name="enabled">
-             <bool>false</bool>
-            </property>
-            <property name="toolTip">
-             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of Triggers to be expected.&lt;/p&gt;&lt;p&gt; #triggers#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-            </property>
-            <property name="text">
-             <string>Number of Bursts:</string>
-            </property>
-           </widget>
-          </item>
-         </layout>
-        </widget>
-       </widget>
-      </item>
       <item row="5" column="2">
        <widget class="QStackedWidget" name="stackedSpinTriggerBurst">
         <property name="sizePolicy">
@@ -1481,6 +1431,214 @@ Frame period between exposures.
         </widget>
        </widget>
       </item>
+      <item row="7" column="0">
+       <widget class="QStackedWidget" name="stackedLblSamplesGates">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="minimumSize">
+         <size>
+          <width>171</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="maximumSize">
+         <size>
+          <width>171</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="currentIndex">
+         <number>0</number>
+        </property>
+        <widget class="QWidget" name="pageLblSamples">
+         <layout class="QGridLayout" name="gridLblTrigger_2">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QLabel" name="lblNumSamples">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of analog samples.&lt;/p&gt;&lt;p&gt;#asamples#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="text">
+             <string>Number of Samples:</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+        <widget class="QWidget" name="pageLblGates">
+         <layout class="QGridLayout" name="gridLblBurst_2">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QLabel" name="lblNumGates">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of external gates.&lt;/p&gt;&lt;p&gt;#gates#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="text">
+             <string>Number of Gates:</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+       </widget>
+      </item>
+      <item row="7" column="2">
+       <widget class="QStackedWidget" name="stackedSpinSamplesGates">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="minimumSize">
+         <size>
+          <width>208</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="maximumSize">
+         <size>
+          <width>208</width>
+          <height>32</height>
+         </size>
+        </property>
+        <property name="currentIndex">
+         <number>0</number>
+        </property>
+        <widget class="QWidget" name="pageSpinSamples">
+         <layout class="QGridLayout" name="gridSpinTrigger_2">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QSpinBox" name="spinNumSamples">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="sizePolicy">
+             <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+              <horstretch>0</horstretch>
+              <verstretch>0</verstretch>
+             </sizepolicy>
+            </property>
+            <property name="minimumSize">
+             <size>
+              <width>0</width>
+              <height>25</height>
+             </size>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of analog samples.&lt;/p&gt;&lt;p&gt;#asamples#&lt;/p&gt;&lt;p&gt;&lt;br/&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="statusTip">
+             <string/>
+            </property>
+            <property name="whatsThis">
+             <string/>
+            </property>
+            <property name="alignment">
+             <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+            </property>
+            <property name="keyboardTracking">
+             <bool>false</bool>
+            </property>
+            <property name="suffix">
+             <string/>
+            </property>
+            <property name="minimum">
+             <number>-1</number>
+            </property>
+            <property name="maximum">
+             <number>2000000000</number>
+            </property>
+            <property name="value">
+             <number>1</number>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+        <widget class="QWidget" name="pageSpinGates">
+         <layout class="QGridLayout" name="gridSpinBurst_2">
+          <property name="margin">
+           <number>0</number>
+          </property>
+          <property name="spacing">
+           <number>0</number>
+          </property>
+          <item row="0" column="0">
+           <widget class="QSpinBox" name="spinNumGates">
+            <property name="enabled">
+             <bool>false</bool>
+            </property>
+            <property name="sizePolicy">
+             <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+              <horstretch>0</horstretch>
+              <verstretch>0</verstretch>
+             </sizepolicy>
+            </property>
+            <property name="minimumSize">
+             <size>
+              <width>0</width>
+              <height>25</height>
+             </size>
+            </property>
+            <property name="toolTip">
+             <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;Number of external gates.&lt;/p&gt;&lt;p&gt;#gates#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+            </property>
+            <property name="statusTip">
+             <string/>
+            </property>
+            <property name="whatsThis">
+             <string/>
+            </property>
+            <property name="alignment">
+             <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+            </property>
+            <property name="keyboardTracking">
+             <bool>false</bool>
+            </property>
+            <property name="suffix">
+             <string/>
+            </property>
+            <property name="minimum">
+             <number>-1</number>
+            </property>
+            <property name="maximum">
+             <number>2000000000</number>
+            </property>
+            <property name="value">
+             <number>1</number>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+       </widget>
+      </item>
      </layout>
     </widget>
    </item>
@@ -1513,7 +1671,6 @@ Frame period between exposures.
   <tabstop>comboExpUnit</tabstop>
   <tabstop>spinPeriod</tabstop>
   <tabstop>comboPeriodUnit</tabstop>
-  <tabstop>spinNumSamples</tabstop>
  </tabstops>
  <resources>
   <include location="../include/icons.qrc"/>

slsDetectorGui/include/qCloneWidget.h

@@ -14,7 +14,8 @@ class qCloneWidget : public QMainWindow, private Ui::ClonePlotObject {
     qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
                  SlsQt1DPlot *gp1, SlsQt2DPlot *gp, QString title,
                  QString filePath, QString fileName, int64_t aIndex,
-                 bool displayStats, QString min, QString max, QString sum);
+                 bool displayStats, QString min, QString max, QString sum,
+                 bool completeImage);
 
     ~qCloneWidget();
 

slsDetectorGui/include/qDacWidget.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_dac.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
+#include "ui_form_dac.h"
 #include <string>
 
 class qDacWidget : public QWidget, private Ui::WidgetDacObject {

slsDetectorGui/include/qDefs.h

@@ -1,14 +1,15 @@
 #pragma once
 
+#include "logger.h"
 #include "sls_detector_defs.h"
 
 #include <QAbstractButton>
 #include <QMessageBox>
 
 #include <chrono>
+#include <cstdint>
 #include <iostream>
 #include <ostream>
-#include <cstdint>
 #include <string>
 
 using std::chrono::duration;

slsDetectorGui/include/qDetectorMain.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_detectormain.h"
-#include "qDefs.h"
 #include "Detector.h"
+#include "qDefs.h"
+#include "ui_form_detectormain.h"
 #include <QTabWidget>
 
 class qDrawPlot;
@@ -29,7 +29,7 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
     Q_OBJECT
 
   public:
-    qDetectorMain(int multiId, const std::string& fname, bool isDevel);
+    qDetectorMain(int multiId, const std::string &fname, bool isDevel);
     ~qDetectorMain();
 
   private slots:
@@ -51,9 +51,9 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
 
   private:
     void SetUpWidgetWindow();
-    void SetUpDetector(const std::string& config_file, int multiID);
+    void SetUpDetector(const std::string &config_file, int multiID);
     void Initialization();
-    void LoadConfigFile(const std::string& config_file);
+    void LoadConfigFile(const std::string &config_file);
 
     /** enumeration of the tabs */
     enum {
@@ -70,7 +70,7 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
     slsDetectorDefs::detectorType detType;
     std::unique_ptr<sls::Detector> det;
     qDrawPlot *plot;
-    MyTabWidget* tabs;
+    MyTabWidget *tabs;
     std::unique_ptr<QScrollArea> scroll[NumberOfTabs];
     qTabMeasurement *tabMeasurement;
     qTabDataOutput *tabDataOutput;

slsDetectorGui/include/qDrawPlot.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_plot.h"
-#include "qDefs.h"
 #include "Detector.h"
+#include "qDefs.h"
+#include "ui_form_plot.h"
 #include <mutex>
 
 class SlsQt1DPlot;
@@ -59,11 +59,9 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
 
   private slots:
     void SetSaveFileName(QString val);
-    void AcquireThread();
     void UpdatePlot();
 
   signals:
-    void StartAcquireSignal();
     void AcquireFinishedSignal();
     void AbortSignal();
     void UpdateSignal();
@@ -74,6 +72,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     void SetupPlots();
     void GetStatistics(double &min, double &max, double &sum);
     void DetachHists();
+    void AcquireThread();
     static void GetAcquisitionFinishedCallBack(double currentProgress,
                                                int detectorStatus,
                                                void *this_pointer);
@@ -114,6 +113,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     QString zTitle2d{"Intensity"};
     QString plotTitle{""};
     QString indexTitle{""};
+    bool completeImage{false};
     bool xyRangeChanged{false};
     double xyRange[4]{0, 0, 0, 0};
     bool isXYRange[4]{false, false, false, false};

slsDetectorGui/include/qTabAdvanced.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_advanced.h"
 #include "Detector.h"
+#include "ui_form_tab_advanced.h"
 
 class qDrawPlot;
 
@@ -36,6 +36,9 @@ class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     void SetNumStoragecells(int value);
     void SetSubExposureTime();
     void SetSubDeadTime();
+    void SetGateIndex(int value);
+    void SetExposureTime();
+    void SetGateDelay();
 
   private:
     void SetupWidgetWindow();
@@ -59,6 +62,8 @@ class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     void GetNumStoragecells();
     void GetSubExposureTime();
     void GetSubDeadTime();
+    void GetExposureTime();
+    void GetGateDelay();
 
     sls::Detector *det;
     qDrawPlot *plot;

slsDetectorGui/include/qTabDataOutput.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_dataoutput.h"
 #include "Detector.h"
+#include "ui_form_tab_dataoutput.h"
 
 class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     Q_OBJECT

slsDetectorGui/include/qTabDebugging.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_debugging.h"
 #include "Detector.h"
+#include "ui_form_tab_debugging.h"
 
 class QTreeWidget;
 class QTreeWidgetItem;

slsDetectorGui/include/qTabDeveloper.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_tab_developer.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
+#include "ui_form_tab_developer.h"
 #include <vector>
 
 class qDacWidget;

slsDetectorGui/include/qTabMeasurement.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_measurement.h"
 #include "Detector.h"
+#include "ui_form_tab_measurement.h"
 
 class qDrawPlot;
 class QStandardItemModel;
@@ -25,6 +25,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     void SetNumTriggers(int val);
     void SetNumBursts(int val);
     void SetNumSamples(int val);
+    void SetNumGates(int val);
     void SetExposureTime();
     void SetAcquisitionPeriod();
     void SetDelay();
@@ -45,6 +46,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
      * show bursts and burst period
      */
     void ShowTriggerDelay();
+    void ShowGates();
     void SetupTimingMode();
     void EnableWidgetsforTimingMode();
 
@@ -53,6 +55,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     void GetNumTriggers();
     void GetNumBursts();
     void GetNumSamples();
+    void GetNumGates();
     void GetExposureTime();
     void GetAcquisitionPeriod();
     void CheckAcqPeriodGreaterThanExp();
@@ -76,7 +79,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     sls::Detector *det;
     qDrawPlot *plot;
     // enum for the timing mode
-    enum { AUTO, TRIGGER, GATED, BURST_TRIGGER, NUMTIMINGMODES };
+    enum { AUTO, TRIGGER, GATED, BURST_TRIGGER, TRIGGER_GATED, NUMTIMINGMODES };
     QTimer *progressTimer;
     // tool tip variables
     QString acqPeriodTip;
@@ -84,6 +87,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     QPalette red;
     bool delayImplemented;
     bool sampleImplemented;
+    bool gateImplemented;
     bool startingFnumImplemented;
     bool isAcquisitionStopped{false};
     int numMeasurements{1};

slsDetectorGui/include/qTabPlot.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_plot.h"
 #include "Detector.h"
+#include "ui_form_tab_plot.h"
 
 class qDrawPlot;
 class QButtonGroup;

slsDetectorGui/include/qTabSettings.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_settings.h"
 #include "Detector.h"
+#include "ui_form_tab_settings.h"
 
 class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     Q_OBJECT

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DPlot.h

@@ -1,8 +1,8 @@
 #ifndef SLSQT1DPLOT_H
 #define SLSQT1DPLOT_H
 
-#include "ansi.h"
 #include "SlsQt1DZoomer.h"
+#include "ansi.h"
 #include <qwt_plot.h>
 #include <qwt_plot_curve.h>
 #include <qwt_plot_marker.h>

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DZoomer.h

@@ -1,9 +1,9 @@
 #ifndef SLSQT2DZOOMER_H
 #define SLSQT2DZOOMER_H
 #include "SlsQt2DHist.h"
+#include <cstdio>
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
-#include <cstdio>
 
 class SlsQt2DZoomer : public QwtPlotZoomer {
   private:

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DPlot.cpp

@@ -1,7 +1,7 @@
 
 /* TODO! short description */
 #include "SlsQt1DPlot.h"
-#include <qwt_symbol.h>
+#include <iostream>
 #include <qwt_legend.h>
 #include <qwt_math.h>
 #include <qwt_painter.h>
@@ -10,8 +10,8 @@
 #include <qwt_scale_draw.h>
 #include <qwt_scale_engine.h>
 #include <qwt_scale_widget.h>
+#include <qwt_symbol.h>
 #include <stdlib.h>
-#include <iostream>
 
 #define QwtLog10ScaleEngine QwtLogScaleEngine // hmm
 
@@ -314,7 +314,8 @@ void SlsQtH1DList::Remove(SlsQtH1D *hist) {
             hl = hl->the_next;
         else { // match
             if (!hl->the_next)
-                hl->the_hist = nullptr; // first the_hist is zero when there's no next
+                hl->the_hist =
+                    nullptr; // first the_hist is zero when there's no next
             else {
                 SlsQtH1DList *t = hl->the_next;
                 hl->the_hist = t->the_hist;

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DZoomer.cpp

@@ -1,9 +1,9 @@
 /* TODO! short description */
 #include "SlsQt1DZoomer.h"
 #include "SlsQt1DPlot.h"
+#include <iostream>
 #include <qwt_plot.h>
 #include <qwt_scale_div.h>
-#include <iostream>
 
 void SlsQt1DZoomer::ResetZoomBase() {
     SetZoomBase(x0, y0, x1 - x0,

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DPlot.cpp

@@ -1,5 +1,5 @@
 #include "SlsQt2DPlot.h"
-#include "ansi.h"
+// #include "ansi.h"
 
 #include <qlist.h>
 #include <qprinter.h>
@@ -216,7 +216,7 @@ QwtLinearColorMap *SlsQt2DPlot::myColourMap(QVector<double> colourStops) {
 }
 
 QwtLinearColorMap *SlsQt2DPlot::myColourMap(int log) {
-    QVector<double> cs{0.0, 0.34, 0.61 ,0.84, 1.0};
+    QVector<double> cs{0.0, 0.34, 0.61, 0.84, 1.0};
     if (log) {
         for (int i = 0; i < cs.size(); ++i)
             cs[i] = (pow(10, 2 * cs[i]) - 1) / 99.0;
@@ -224,7 +224,6 @@ QwtLinearColorMap *SlsQt2DPlot::myColourMap(int log) {
     return myColourMap(cs);
 }
 
-
 void SlsQt2DPlot::Update() {
     if (isLog)
         hist->SetMinimumToFirstGreaterThanZero();

slsDetectorGui/src/qCloneWidget.cpp

@@ -15,13 +15,20 @@ qCloneWidget::qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
                            SlsQt1DPlot *gp1, SlsQt2DPlot *gp, QString title,
                            QString fPath, QString fName, int64_t aIndex,
                            bool displayStats, QString min, QString max,
-                           QString sum)
+                           QString sum, bool completeImage)
     : QMainWindow(parent), plot1d(p1), plot2d(p2), gainplot1d(gp1),
       gainplot2d(gp), filePath(fPath), fileName(fName), acqIndex(aIndex) {
     setupUi(this);
     id = qCloneWidget::NumClones++;
     SetupWidgetWindow(title);
     DisplayStats(displayStats, min, max, sum);
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
+    if (completeImage) {
+        lblCompleteImage->show();
+    } else {
+        lblInCompleteImage->show();
+    }
 }
 
 qCloneWidget::~qCloneWidget() {

slsDetectorGui/src/qDacWidget.cpp

@@ -1,7 +1,6 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-
 qDacWidget::qDacWidget(QWidget *parent, sls::Detector *detector, bool d,
                        std::string n, slsDetectorDefs::dacIndex i)
     : QWidget(parent), det(detector), isDac(d), index(i) {
@@ -56,8 +55,8 @@ void qDacWidget::GetDac() {
 
 void qDacWidget::SetDac() {
     int val = (int)spinDac->value();
-    LOG(logINFO) << "Setting dac:" << lblDac->text().toAscii().data()
-                      << " : " << val;
+    LOG(logINFO) << "Setting dac:" << lblDac->text().toAscii().data() << " : "
+                 << val;
 
     try {
         det->setDAC(index, val, 0, {detectorIndex});

slsDetectorGui/src/qDetectorMain.cpp

@@ -19,8 +19,8 @@
 #include <QScrollArea>
 #include <QSizePolicy>
 
-#include <string>
 #include <getopt.h>
+#include <string>
 #include <sys/stat.h>
 
 int main(int argc, char **argv) {
@@ -57,8 +57,7 @@ int main(int argc, char **argv) {
 
         case 'f':
             fname = optarg;
-            LOG(logDEBUG)
-                << long_options[option_index].name << " " << optarg;
+            LOG(logDEBUG) << long_options[option_index].name << " " << optarg;
             break;
 
         case 'd':
@@ -93,7 +92,7 @@ int main(int argc, char **argv) {
     }
 
     QApplication app(argc, argv);
-    app.setStyle(new QPlastiqueStyle); //style is deleted by QApplication
+    app.setStyle(new QPlastiqueStyle); // style is deleted by QApplication
     try {
         qDetectorMain det(multiId, fname, isDeveloper);
         det.show();
@@ -105,18 +104,18 @@ int main(int argc, char **argv) {
     return 0;
 }
 
-qDetectorMain::qDetectorMain(int multiId, const std::string& fname, bool isDevel)
-    : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC), isDeveloper(isDevel),
-      heightPlotWindow(0), heightCentralWidget(0) {
+qDetectorMain::qDetectorMain(int multiId, const std::string &fname,
+                             bool isDevel)
+    : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC),
+      isDeveloper(isDevel), heightPlotWindow(0), heightCentralWidget(0) {
 
     setupUi(this);
     SetUpDetector(fname, multiId);
     SetUpWidgetWindow();
 }
 
-qDetectorMain::~qDetectorMain(){
-    disconnect(tabs, SIGNAL(currentChanged(int)), this,
-            SLOT(Refresh(int)));
+qDetectorMain::~qDetectorMain() {
+    disconnect(tabs, SIGNAL(currentChanged(int)), this, SLOT(Refresh(int)));
 }
 
 void qDetectorMain::SetUpWidgetWindow() {
@@ -132,8 +131,7 @@ void qDetectorMain::SetUpWidgetWindow() {
     layoutTabs->addWidget(tabs);
 
     // creating all the other tab widgets
-    tabMeasurement =
-        new qTabMeasurement(this, det.get(), plot);
+    tabMeasurement = new qTabMeasurement(this, det.get(), plot);
     tabDataOutput = new qTabDataOutput(this, det.get());
     tabPlot = new qTabPlot(this, det.get(), plot);
     tabSettings = new qTabSettings(this, det.get());
@@ -206,7 +204,7 @@ void qDetectorMain::SetUpWidgetWindow() {
     Initialization();
 }
 
-void qDetectorMain::SetUpDetector(const std::string& config_file, int multiID) {
+void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
 
     // instantiate detector and set window title
     det = sls::make_unique<sls::Detector>(multiID);
@@ -260,8 +258,8 @@ void qDetectorMain::Initialization() {
     //	Measurement tab
     connect(tabMeasurement, SIGNAL(EnableTabsSignal(bool)), this,
             SLOT(EnableTabs(bool)));
-    connect(tabMeasurement, SIGNAL(FileNameChangedSignal(QString)),
-            plot, SLOT(SetSaveFileName(QString)));
+    connect(tabMeasurement, SIGNAL(FileNameChangedSignal(QString)), plot,
+            SLOT(SetSaveFileName(QString)));
     // Plot tab
     connect(tabPlot, SIGNAL(DisableZoomSignal(bool)), this,
             SLOT(SetZoomToolTip(bool)));
@@ -269,8 +267,7 @@ void qDetectorMain::Initialization() {
     // Plotting
     connect(plot, SIGNAL(AcquireFinishedSignal()), tabMeasurement,
             SLOT(AcquireFinished()));
-    connect(plot, SIGNAL(AbortSignal()), tabMeasurement,
-            SLOT(AbortAcquire()));
+    connect(plot, SIGNAL(AbortSignal()), tabMeasurement, SLOT(AbortAcquire()));
 
     // menubar
     // Modes Menu
@@ -284,7 +281,7 @@ void qDetectorMain::Initialization() {
             SLOT(ExecuteHelp(QAction *)));
 }
 
-void qDetectorMain::LoadConfigFile(const std::string& config_file) {
+void qDetectorMain::LoadConfigFile(const std::string &config_file) {
 
     LOG(logINFO) << "Loading config file at start up:" << config_file;
 
@@ -372,8 +369,7 @@ void qDetectorMain::ExecuteUtilities(QAction *action) {
                                "The Configuration Parameters have been "
                                "configured successfully.",
                                "qDetectorMain::ExecuteUtilities");
-                LOG(logINFO)
-                    << "Configuration Parameters loaded successfully";
+                LOG(logINFO) << "Configuration Parameters loaded successfully";
             }
         }
 

slsDetectorGui/src/qDrawPlot.cpp

@@ -87,7 +87,6 @@ void qDrawPlot::SetupWidgetWindow() {
 
 void qDrawPlot::Initialization() {
     connect(this, SIGNAL(UpdateSignal()), this, SLOT(UpdatePlot()));
-    connect(this, SIGNAL(StartAcquireSignal()), this, SLOT(AcquireThread()));
 }
 
 void qDrawPlot::SetupPlots() {
@@ -97,27 +96,13 @@ void qDrawPlot::SetupPlots() {
     slsDetectorDefs::xy res = det->getDetectorSize();
     nPixelsX = res.x;
     nPixelsY = res.y;
-    switch (detType) {
-    case slsDetectorDefs::EIGER:
-        try {
-            if (det->getQuad().tsquash("Inconsistent values for quad type")) {
-                nPixelsX /= 2;
-                nPixelsY *= 2;
-                if (nPixelsX != nPixelsY) {
-                    --nPixelsX;
-                }
-            }
-        }
-        CATCH_DISPLAY("Could not get quad.", "qDrawPlot::SetupPlots")
-        break;
-    default:
-        break;
-    }
     LOG(logINFO) << "nPixelsX:" << nPixelsX;
     LOG(logINFO) << "nPixelsY:" << nPixelsY;
 
     boxPlot->setFont(QFont("Sans Serif", qDefs::Q_FONT_SIZE, QFont::Normal));
     widgetStatistics->hide();
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
 
     // setup 1d data
 
@@ -292,8 +277,7 @@ void qDrawPlot::SetPlotTitlePrefix(QString title) {
 }
 
 void qDrawPlot::SetXAxisTitle(QString title) {
-    LOG(logINFO) << "Setting X Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting X Axis Title to " << title.toAscii().constData();
     if (is1d) {
         xTitle1d = title;
     } else {
@@ -302,8 +286,7 @@ void qDrawPlot::SetXAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetYAxisTitle(QString title) {
-    LOG(logINFO) << "Setting Y Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting Y Axis Title to " << title.toAscii().constData();
     if (is1d) {
         yTitle1d = title;
     } else {
@@ -312,8 +295,7 @@ void qDrawPlot::SetYAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetZAxisTitle(QString title) {
-    LOG(logINFO) << "Setting Z Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting Z Axis Title to " << title.toAscii().constData();
     zTitle2d = title;
 }
 
@@ -324,8 +306,8 @@ void qDrawPlot::SetXYRangeChanged(bool disable, double *xy, bool *isXY) {
     std::copy(xy, xy + 4, xyRange);
     std::copy(isXY, isXY + 4, isXYRange);
 
-    LOG(logDEBUG) << "Setting Disable zoom to " << std::boolalpha
-                       << disable << std::noboolalpha;
+    LOG(logDEBUG) << "Setting Disable zoom to " << std::boolalpha << disable
+                  << std::noboolalpha;
     disableZoom = disable;
 }
 
@@ -363,17 +345,21 @@ double qDrawPlot::GetYMaximum() {
 }
 
 void qDrawPlot::SetDataCallBack(bool enable) {
-    LOG(logINFO) << "Setting data call back to " << std::boolalpha
-                      << enable << std::noboolalpha;
+    LOG(logINFO) << "Setting data call back to " << std::boolalpha << enable
+                 << std::noboolalpha;
+    try {
         if (enable) {
             isPlot = true;
-        det->setRxZmqDataStream(true);
             det->registerDataCallback(&(GetDataCallBack), this);
+            det->setRxZmqDataStream(true);
         } else {
             isPlot = false;
-        det->setRxZmqDataStream(false);
             det->registerDataCallback(nullptr, this);
+            det->setRxZmqDataStream(false);
         }
+    }
+    CATCH_DISPLAY("Could not get set rxr data streaming enable.",
+                  "qDrawPlot::SetDataCallBack")
 }
 
 void qDrawPlot::SetBinary(bool enable, int from, int to) {
@@ -582,8 +568,8 @@ void qDrawPlot::ClonePlot() {
     new qCloneWidget(this, cloneplot1D, cloneplot2D, clonegainplot1D,
                      clonegainplot2D, boxPlot->title(), fileSavePath,
                      fileSaveName, currentAcqIndex, displayStatistics,
-                     lblMinDisp->text(), lblMaxDisp->text(),
-                     lblSumDisp->text());
+                     lblMinDisp->text(), lblMaxDisp->text(), lblSumDisp->text(),
+                     completeImage);
 }
 
 void qDrawPlot::SavePlot() {
@@ -668,7 +654,8 @@ void qDrawPlot::StartAcquisition() {
         xyRangeChanged = true;
     }
 
-    emit StartAcquireSignal();
+    QtConcurrent::run(this, &qDrawPlot::AcquireThread);
+
     LOG(logDEBUG) << "End of Starting Acquisition in qDrawPlot";
 }
 
@@ -684,8 +671,7 @@ void qDrawPlot::AcquireThread() {
     // exception in acquire will not call acquisition finished call back, so
     // handle it
     if (!mess.empty()) {
-        LOG(logERROR) << "Acquisition Finished with an exception: "
-                           << mess;
+        LOG(logERROR) << "Acquisition Finished with an exception: " << mess;
         qDefs::ExceptionMessage("Acquire unsuccessful.", mess,
                                 "qDrawPlot::AcquireFinished");
         try {
@@ -750,16 +736,16 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   << "  \t nx: " << data->nx << std::endl
                   << "  \t ny: " << data->ny << std::endl
                   << "  \t data bytes: " << data->databytes << std::endl
-                       << "  \t dynamic range: " << data->dynamicRange
-                       << std::endl
+                  << "  \t dynamic range: " << data->dynamicRange << std::endl
                   << "  \t file index: " << data->fileIndex << std::endl
+                  << "  \t complete image: " << data->completeImage << std::endl
                   << "  ]";
 
     progress = (int)data->progressIndex;
     currentAcqIndex = data->fileIndex;
     currentFrame = frameIndex;
-    LOG(logDEBUG) << "[ Progress:" << progress
-                       << ", Frame:" << currentFrame << " ]";
+    LOG(logDEBUG) << "[ Progress:" << progress << ", Frame:" << currentFrame
+                  << " ]";
 
     // 2d (only image, not gain data, not pedestalvals),
     // check if npixelsX and npixelsY is the same (quad is different)
@@ -767,12 +753,17 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   static_cast<int>(nPixelsY) != data->ny)) {
         nPixelsX = data->nx;
         nPixelsY = data->ny;
-        LOG(logINFO) << "Change in Detector Shape:\n\tnPixelsX:"
-                          << nPixelsX << " nPixelsY:" << nPixelsY;
+        LOG(logINFO) << "Change in Detector Shape:\n\tnPixelsX:" << nPixelsX
+                     << " nPixelsY:" << nPixelsY;
 
         delete[] data2d;
         data2d = new double[nPixelsY * nPixelsX];
         std::fill(data2d, data2d + nPixelsX * nPixelsY, 0);
+        if (gainData) {
+            delete[] gainData;
+            gainData = new double[nPixelsY * nPixelsX];
+            std::fill(gainData, gainData + nPixelsX * nPixelsY, 0);
+        }
     }
 
     // convert data to double
@@ -795,6 +786,7 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
     if ((int)subFrameIndex != -1) {
         indexTitle = QString("%1 %2").arg(frameIndex, subFrameIndex);
     }
+    completeImage = data->completeImage;
 
     // reset pedestal
     if (resetPedestal) {
@@ -819,8 +811,8 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
         }
         // calculate the pedestal value
         if (pedestalCount == NUM_PEDESTAL_FRAMES) {
-            LOG(logINFO) << "Pedestal Calculated after "
-                              << NUM_PEDESTAL_FRAMES << " frames";
+            LOG(logINFO) << "Pedestal Calculated after " << NUM_PEDESTAL_FRAMES
+                         << " frames";
             for (unsigned int px = 0; px < nPixels; ++px)
                 tempPedestalVals[px] =
                     tempPedestalVals[px] / (double)NUM_PEDESTAL_FRAMES;
@@ -1115,6 +1107,16 @@ void qDrawPlot::UpdatePlot() {
     LOG(logDEBUG) << "Update Plot";
 
     boxPlot->setTitle(plotTitle);
+
+    // notify of incomplete images
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
+    if (completeImage) {
+        lblCompleteImage->show();
+    } else {
+        lblInCompleteImage->show();
+    }
+
     if (is1d) {
         Update1dPlot();
     } else {

slsDetectorGui/src/qTabAdvanced.cpp

@@ -29,9 +29,21 @@ void qTabAdvanced::SetupWidgetWindow() {
         tab_roi->setEnabled(true);
         break;
     case slsDetectorDefs::MYTHEN3:
+        lblDiscardBits->setEnabled(true);
+        spinDiscardBits->setEnabled(true);
+        lblGateIndex->setEnabled(true);
+        spinGateIndex->setEnabled(true);
+        lblExpTime->setEnabled(true);
+        spinExpTime->setEnabled(true);
+        comboExpTimeUnit->setEnabled(true);
+        lblGateDelay->setEnabled(true);
+        spinGateDelay->setEnabled(true);
+        comboGateDelayUnit->setEnabled(true);
+        break;
     case slsDetectorDefs::GOTTHARD2:
         lblDiscardBits->setEnabled(true);
         spinDiscardBits->setEnabled(true);
+        break;
     default:
         break;
     }
@@ -116,6 +128,28 @@ void qTabAdvanced::Initialization() {
         connect(spinDiscardBits, SIGNAL(valueChanged(int)), plot,
                 SLOT(SetNumDiscardBits(int)));
     }
+
+    // gate index
+    if (lblGateIndex->isEnabled()) {
+        connect(spinGateIndex, SIGNAL(valueChanged(int)), this,
+                SLOT(SetGateIndex(int)));
+    }
+
+    // exptime1, exptime2, exptme3
+    if (lblExpTime->isEnabled()) {
+        connect(spinExpTime, SIGNAL(valueChanged(double)), this,
+                SLOT(SetExposureTime()));
+        connect(comboExpTimeUnit, SIGNAL(currentIndexChanged(int)), this,
+                SLOT(SetExposureTime()));
+    }
+
+    // gatedelay1, gatedelay2, gatedelay3
+    if (lblGateDelay->isEnabled()) {
+        connect(spinGateDelay, SIGNAL(valueChanged(double)), this,
+                SLOT(SetGateDelay()));
+        connect(comboGateDelayUnit, SIGNAL(currentIndexChanged(int)), this,
+                SLOT(SetGateDelay()));
+    }
 }
 
 void qTabAdvanced::PopulateDetectors() {
@@ -531,8 +565,7 @@ void qTabAdvanced::SetROI() {
     roi.xmax = spinXmax->value();
 
     // set roi
-    LOG(logINFO) << "Setting ROI: [" << roi.xmin << ", " << roi.xmax
-                      << "]";
+    LOG(logINFO) << "Setting ROI: [" << roi.xmin << ", " << roi.xmax << "]";
     try {
         det->setROI(roi, {comboReadout->currentIndex()});
     }
@@ -586,8 +619,7 @@ void qTabAdvanced::GetNumStoragecells() {
 }
 
 void qTabAdvanced::SetNumStoragecells(int value) {
-    LOG(logINFO) << "Setting number of additional stoarge cells: "
-                      << value;
+    LOG(logINFO) << "Setting number of additional stoarge cells: " << value;
     try {
         det->setNumberOfAdditionalStorageCells(value);
     }
@@ -621,8 +653,8 @@ void qTabAdvanced::SetSubExposureTime() {
     auto timeNS = qDefs::getNSTime(std::make_pair(
         spinSubExpTime->value(),
         static_cast<qDefs::timeUnit>(comboSubExpTimeUnit->currentIndex())));
-    LOG(logINFO)
-        << "Setting sub frame acquisition time to " << timeNS.count() << " ns"
+    LOG(logINFO) << "Setting sub frame acquisition time to " << timeNS.count()
+                 << " ns"
                  << "/" << spinSubExpTime->value()
                  << qDefs::getUnitString(
                         (qDefs::timeUnit)comboSubExpTimeUnit->currentIndex());
@@ -661,8 +693,7 @@ void qTabAdvanced::SetSubDeadTime() {
         spinSubDeadTime->value(),
         static_cast<qDefs::timeUnit>(comboSubDeadTimeUnit->currentIndex())));
 
-    LOG(logINFO)
-        << "Setting sub frame dead time to " << timeNS.count() << " ns"
+    LOG(logINFO) << "Setting sub frame dead time to " << timeNS.count() << " ns"
                  << "/" << spinSubDeadTime->value()
                  << qDefs::getUnitString(
                         (qDefs::timeUnit)comboSubDeadTimeUnit->currentIndex());
@@ -674,6 +705,92 @@ void qTabAdvanced::SetSubDeadTime() {
     GetSubDeadTime();
 }
 
+void qTabAdvanced::SetGateIndex(int value) {
+    LOG(logINFO) << "Getting exptime and gate delay for gate index: " << value;
+    GetExposureTime();
+    GetGateDelay();
+}
+
+void qTabAdvanced::GetExposureTime() {
+    int gateIndex = spinGateIndex->value();
+    LOG(logDEBUG) << "Getting exposure time" << gateIndex;
+    disconnect(spinExpTime, SIGNAL(valueChanged(double)), this,
+               SLOT(SetExposureTime()));
+    disconnect(comboExpTimeUnit, SIGNAL(currentIndexChanged(int)), this,
+               SLOT(SetExposureTime()));
+    try {
+        auto retval = det->getExptime(gateIndex).tsquash(
+            "Exptime is inconsistent for all detectors.");
+        auto time = qDefs::getUserFriendlyTime(retval);
+        spinExpTime->setValue(time.first);
+        comboExpTimeUnit->setCurrentIndex(static_cast<int>(time.second));
+    }
+    CATCH_DISPLAY("Could not get exposure time.",
+                  "qTabSettings::GetExposureTime")
+    connect(spinExpTime, SIGNAL(valueChanged(double)), this,
+            SLOT(SetExposureTime()));
+    connect(comboExpTimeUnit, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetExposureTime()));
+}
+
+void qTabAdvanced::SetExposureTime() {
+    int gateIndex = spinGateIndex->value();
+    auto timeNS = qDefs::getNSTime(std::make_pair(
+        spinExpTime->value(),
+        static_cast<qDefs::timeUnit>(comboExpTimeUnit->currentIndex())));
+    LOG(logINFO) << "Setting exptime" << gateIndex << " to " << timeNS.count()
+                 << " ns"
+                 << "/" << spinExpTime->value()
+                 << qDefs::getUnitString(
+                        (qDefs::timeUnit)comboExpTimeUnit->currentIndex());
+    try {
+        det->setExptime(gateIndex, timeNS);
+    }
+    CATCH_DISPLAY("Could not set exposure time.",
+                  "qTabAdvanced::SetExposureTime")
+
+    GetExposureTime();
+}
+
+void qTabAdvanced::GetGateDelay() {
+    int gateIndex = spinGateIndex->value();
+    LOG(logDEBUG) << "Getting gate delay" << gateIndex;
+    disconnect(spinGateDelay, SIGNAL(valueChanged(double)), this,
+               SLOT(SetGateDelay()));
+    disconnect(comboGateDelayUnit, SIGNAL(currentIndexChanged(int)), this,
+               SLOT(SetGateDelay()));
+    try {
+        auto retval = det->getGateDelay(gateIndex).tsquash(
+            "GateDelay is inconsistent for all detectors.");
+        auto time = qDefs::getUserFriendlyTime(retval);
+        spinGateDelay->setValue(time.first);
+        comboGateDelayUnit->setCurrentIndex(static_cast<int>(time.second));
+    }
+    CATCH_DISPLAY("Could not get gate delay.", "qTabSettings::GetGateDelay")
+    connect(spinGateDelay, SIGNAL(valueChanged(double)), this,
+            SLOT(SetGateDelay()));
+    connect(comboGateDelayUnit, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetGateDelay()));
+}
+
+void qTabAdvanced::SetGateDelay() {
+    int gateIndex = spinGateIndex->value();
+    auto timeNS = qDefs::getNSTime(std::make_pair(
+        spinGateDelay->value(),
+        static_cast<qDefs::timeUnit>(comboGateDelayUnit->currentIndex())));
+    LOG(logINFO) << "Setting gatedelay" << gateIndex << " to " << timeNS.count()
+                 << " ns"
+                 << "/" << spinGateDelay->value()
+                 << qDefs::getUnitString(
+                        (qDefs::timeUnit)comboGateDelayUnit->currentIndex());
+    try {
+        det->setGateDelay(gateIndex, timeNS);
+    }
+    CATCH_DISPLAY("Could not set gate delay.", "qTabAdvanced::SetGateDelay")
+
+    GetGateDelay();
+}
+
 void qTabAdvanced::Refresh() {
     LOG(logDEBUG) << "**Updating Advanced Tab";
 
@@ -701,5 +818,14 @@ void qTabAdvanced::Refresh() {
         GetSubDeadTime();
     }
 
+    // exptime1, exptime2, exptme3
+    if (lblExpTime->isEnabled()) {
+        GetExposureTime();
+    }
+
+    // gatedelay1, gatedelay2, gatedelay3
+    if (lblGateDelay->isEnabled()) {
+        GetGateDelay();
+    }
     LOG(logDEBUG) << "**Updated Advanced Tab";
 }

slsDetectorGui/src/qTabDataOutput.cpp

@@ -334,15 +334,13 @@ void qTabDataOutput::SetRateCorrection() {
         // custom dead time
         if (radioCustomDeadtime->isChecked()) {
             int64_t deadtime = spinCustomDeadTime->value();
-            LOG(logINFO)
-                << "Setting Rate Correction with custom dead time: "
+            LOG(logINFO) << "Setting Rate Correction with custom dead time: "
                          << deadtime;
             det->setRateCorrection(sls::ns(deadtime));
         }
         // default dead time
         else {
-            LOG(logINFO)
-                << "Setting Rate Correction with default dead time";
+            LOG(logINFO) << "Setting Rate Correction with default dead time";
             det->setDefaultRateCorrection();
         }
     }
@@ -398,8 +396,7 @@ void qTabDataOutput::SetFlags() {
     auto mode =
         comboEigerParallelFlag->currentIndex() == PARALLEL ? true : false;
     try {
-        LOG(logINFO)
-            << "Setting Readout Flags to "
+        LOG(logINFO) << "Setting Readout Flags to "
                      << comboEigerParallelFlag->currentText().toAscii().data();
         det->setParallelMode(mode);
     }

slsDetectorGui/src/qTabDebugging.cpp

@@ -1,6 +1,6 @@
 #include "qTabDebugging.h"
-#include "qDefs.h"
 #include "ToString.h"
+#include "qDefs.h"
 #include <QDesktopWidget>
 #include <QGridLayout>
 #include <QTreeWidget>
@@ -105,8 +105,9 @@ void qTabDebugging::GetInfo() {
         treeDet->setHeaderLabel("Eiger Detector");
         // get num modules
         for (int i = 0; i < comboDetector->count() / 2; ++i)
-            items.append(new QTreeWidgetItem(
-                (QTreeWidget *)nullptr, QStringList(QString("Module %1").arg(i))));
+            items.append(
+                new QTreeWidgetItem((QTreeWidget *)nullptr,
+                                    QStringList(QString("Module %1").arg(i))));
         treeDet->insertTopLevelItems(0, items);
         // gets det names
         for (int i = 0; i < comboDetector->count(); ++i) {

slsDetectorGui/src/qTabMeasurement.cpp

@@ -31,6 +31,7 @@ void qTabMeasurement::SetupWidgetWindow() {
     progressTimer = new QTimer(this);
 
     sampleImplemented = false;
+    gateImplemented = false;
     delayImplemented = true;
     startingFnumImplemented = false;
     // by default, delay and starting fnum is disabled in form
@@ -41,6 +42,8 @@ void qTabMeasurement::SetupWidgetWindow() {
     // default is triggers and delay (not #bursts and burst period for gotthard2
     // in auto mode)
     ShowTriggerDelay();
+    // default is to show samples, mythen3, show gates
+    ShowGates();
 
     // enabling according to det type
     switch (det->getDetectorType().squash()) {
@@ -67,6 +70,9 @@ void qTabMeasurement::SetupWidgetWindow() {
         spinBurstPeriod->setEnabled(true);
         comboBurstPeriodUnit->setEnabled(true);
         break;
+    case slsDetectorDefs::MYTHEN3:
+        gateImplemented = true;
+        break;
     default:
         break;
     }
@@ -97,6 +103,10 @@ void qTabMeasurement::Initialization() {
         connect(spinNumSamples, SIGNAL(valueChanged(int)), this,
                 SLOT(SetNumSamples(int)));
     }
+    if (gateImplemented) {
+        connect(spinNumGates, SIGNAL(valueChanged(int)), this,
+                SLOT(SetNumGates(int)));
+    }
     connect(spinExpTime, SIGNAL(valueChanged(double)), this,
             SLOT(SetExposureTime()));
     connect(comboExpUnit, SIGNAL(currentIndexChanged(int)), this,
@@ -161,6 +171,16 @@ void qTabMeasurement::ShowTriggerDelay() {
     }
 }
 
+void qTabMeasurement::ShowGates() {
+    if (det->getDetectorType().squash() == slsDetectorDefs::MYTHEN3) {
+        stackedLblSamplesGates->setCurrentWidget(pageLblGates);
+        stackedSpinSamplesGates->setCurrentWidget(pageSpinGates);
+    } else {
+        stackedLblSamplesGates->setCurrentWidget(pageLblSamples);
+        stackedSpinSamplesGates->setCurrentWidget(pageSpinSamples);
+    }
+}
+
 void qTabMeasurement::SetupTimingMode() {
     QStandardItemModel *model =
         qobject_cast<QStandardItemModel *>(comboTimingMode->model());
@@ -173,9 +193,20 @@ void qTabMeasurement::SetupTimingMode() {
             item[i] = model->itemFromIndex(index[i]);
         }
 
-        if (det->getDetectorType().squash() != slsDetectorDefs::EIGER) {
         item[(int)GATED]->setEnabled(false);
         item[(int)BURST_TRIGGER]->setEnabled(false);
+        item[(int)TRIGGER_GATED]->setEnabled(false);
+        switch (det->getDetectorType().squash()) {
+        case slsDetectorDefs::EIGER:
+            item[(int)GATED]->setEnabled(true);
+            item[(int)BURST_TRIGGER]->setEnabled(true);
+            break;
+        case slsDetectorDefs::MYTHEN3:
+            item[(int)GATED]->setEnabled(true);
+            item[(int)TRIGGER_GATED]->setEnabled(true);
+            break;
+        default:
+            break;
         }
     }
 }
@@ -197,6 +228,8 @@ void qTabMeasurement::EnableWidgetsforTimingMode() {
     lblDelay->setEnabled(false);
     spinDelay->setEnabled(false);
     comboDelayUnit->setEnabled(false);
+    lblNumGates->setEnabled(false);
+    spinNumGates->setEnabled(false);
 
     switch (comboTimingMode->currentIndex()) {
     case AUTO:
@@ -223,6 +256,7 @@ void qTabMeasurement::EnableWidgetsforTimingMode() {
         lblExpTime->setEnabled(true);
         spinExpTime->setEnabled(true);
         comboExpUnit->setEnabled(true);
+        // not implemented  in FW to have multiple frames for eiger
         if (det->getDetectorType().squash() == slsDetectorDefs::EIGER) {
             spinNumFrames->setValue(1);
         } else {
@@ -241,8 +275,12 @@ void qTabMeasurement::EnableWidgetsforTimingMode() {
         }
         break;
     case GATED:
-        // #frames
+        // #frames, #gates(mythen3)
         spinNumTriggers->setValue(1);
+        if (det->getDetectorType().squash() == slsDetectorDefs::MYTHEN3) {
+            lblNumGates->setEnabled(true);
+            spinNumGates->setEnabled(true);
+        }
         lblNumFrames->setEnabled(true);
         spinNumFrames->setEnabled(true);
         break;
@@ -258,6 +296,18 @@ void qTabMeasurement::EnableWidgetsforTimingMode() {
         spinPeriod->setEnabled(true);
         comboPeriodUnit->setEnabled(true);
         break;
+    case TRIGGER_GATED:
+        // #triggers, delay, #frames, #gates
+        lblNumTriggers->setEnabled(true);
+        spinNumTriggers->setEnabled(true);
+        lblDelay->setEnabled(true);
+        spinDelay->setEnabled(true);
+        comboDelayUnit->setEnabled(true);
+        lblNumFrames->setEnabled(true);
+        spinNumFrames->setEnabled(true);
+        lblNumGates->setEnabled(true);
+        spinNumGates->setEnabled(true);
+        break;
     default:
         break;
     }
@@ -278,6 +328,7 @@ void qTabMeasurement::GetTimingMode() {
         case slsDetectorDefs::TRIGGER_EXPOSURE:
         case slsDetectorDefs::GATED:
         case slsDetectorDefs::BURST_TRIGGER:
+        case slsDetectorDefs::TRIGGER_GATED:
             comboTimingMode->setCurrentIndex((int)retval);
             // update widget enable only if different
             if (oldMode != comboTimingMode->currentIndex()) {
@@ -411,6 +462,31 @@ void qTabMeasurement::SetNumSamples(int val) {
                  &qTabMeasurement::GetNumSamples)
 }
 
+void qTabMeasurement::GetNumGates() {
+    LOG(logDEBUG) << "Getting number of gates";
+    disconnect(spinNumGates, SIGNAL(valueChanged(int)), this,
+               SLOT(SetNumGates(int)));
+    try {
+        auto retval = det->getNumberOfGates().tsquash(
+            "Inconsistent number of gates for all detectors.");
+        spinNumGates->setValue(retval);
+    }
+    CATCH_DISPLAY("Could not get number of gates.",
+                  "qTabMeasurement::GetNumGates")
+    connect(spinNumGates, SIGNAL(valueChanged(int)), this,
+            SLOT(SetNumGates(int)));
+}
+
+void qTabMeasurement::SetNumGates(int val) {
+    LOG(logINFO) << "Setting number of external gates to " << val;
+    try {
+        det->setNumberOfGates(val);
+    }
+    CATCH_HANDLE("Could not set number of gates.",
+                 "qTabMeasurement::SetNumGates", this,
+                 &qTabMeasurement::GetNumGates)
+}
+
 void qTabMeasurement::GetExposureTime() {
     LOG(logDEBUG) << "Getting exposure time";
     disconnect(spinExpTime, SIGNAL(valueChanged(double)), this,
@@ -419,13 +495,31 @@ void qTabMeasurement::GetExposureTime() {
                SLOT(SetExposureTime()));
     try {
         spinExpTime->setValue(-1);
-        auto retval = det->getExptime().tsquash(
+
+        bool inconsistentGateValues = false;
+        std::chrono::nanoseconds retval;
+        if (det->getDetectorType().squash() == slsDetectorDefs::MYTHEN3) {
+            auto retvals = det->getExptimeForAllGates().tsquash(
                 "Inconsistent exposure time for all detectors.");
+            // all gates have same value
+            if (retvals[0] == retvals[1] && retvals[1] == retvals[2]) {
+                retval = retvals[0];
+            } else {
+                // dont throw, just leave it as -1
+                inconsistentGateValues = true;
+            }
+        } else {
+            retval = det->getExptime().tsquash(
+                "Inconsistent exposure time for all detectors.");
+        }
+
+        if (!inconsistentGateValues) {
             auto time = qDefs::getUserFriendlyTime(retval);
             spinExpTime->setValue(time.first);
             comboExpUnit->setCurrentIndex(static_cast<int>(time.second));
             CheckAcqPeriodGreaterThanExp();
         }
+    }
     CATCH_DISPLAY("Could not get exposure time.",
                   "qTabMeasurement::GetExposureTime")
     connect(spinExpTime, SIGNAL(valueChanged(double)), this,
@@ -771,8 +865,7 @@ void qTabMeasurement::AcquireFinished() {
         if (startingFnumImplemented) {
             GetStartingFrameNumber();
         }
-        LOG(logDEBUG) << "Measurement " << currentMeasurement
-                           << " finished";
+        LOG(logDEBUG) << "Measurement " << currentMeasurement << " finished";
         // next measurement if acq is not stopped
         if (!isAcquisitionStopped &&
             ((currentMeasurement + 1) < numMeasurements)) {
@@ -801,8 +894,9 @@ void qTabMeasurement::Enable(bool enable) {
     frameNotTimeResolved->setEnabled(enable);
 
     // shortcut each time, else it doesnt work a second time
-    btnStart->setShortcut(QApplication::translate(
-        "TabMeasurementObject", "Shift+Space", nullptr, QApplication::UnicodeUTF8));
+    btnStart->setShortcut(QApplication::translate("TabMeasurementObject",
+                                                  "Shift+Space", nullptr,
+                                                  QApplication::UnicodeUTF8));
 }
 
 void qTabMeasurement::Refresh() {
@@ -826,6 +920,9 @@ void qTabMeasurement::Refresh() {
         if (sampleImplemented) {
             GetNumSamples();
         }
+        if (gateImplemented) {
+            GetNumGates();
+        }
         GetFileWrite();
         GetFileName();
         GetRunIndex();

slsDetectorGui/src/qTabPlot.cpp

@@ -6,7 +6,6 @@
 #include <QStackedLayout>
 #include <QStandardItemModel>
 
-
 QString qTabPlot::defaultPlotTitle("");
 QString qTabPlot::defaultHistXAxisTitle("Channel Number");
 QString qTabPlot::defaultHistYAxisTitle("Counts");
@@ -64,6 +63,7 @@ void qTabPlot::SetupWidgetWindow() {
         chkGapPixels->setEnabled(true);
         break;
     case slsDetectorDefs::JUNGFRAU:
+        chkGapPixels->setEnabled(true);
         chkGainPlot->setEnabled(true);
         chkGainPlot->setChecked(true);
         plot->EnableGainPlot(true);
@@ -289,16 +289,14 @@ void qTabPlot::SetBinary() {
     bool binary1D = chkBinary->isChecked();
     bool binary2D = chkBinary_2->isChecked();
     if (is1d) {
-        LOG(logINFO) << "Binary Plot "
-                          << (binary1D ? "enabled" : "disabled");
+        LOG(logINFO) << "Binary Plot " << (binary1D ? "enabled" : "disabled");
         lblFrom->setEnabled(binary1D);
         lblTo->setEnabled(binary1D);
         spinFrom->setEnabled(binary1D);
         spinTo->setEnabled(binary1D);
         plot->SetBinary(binary1D, spinFrom->value(), spinTo->value());
     } else {
-        LOG(logINFO) << "Binary Plot "
-                          << (binary2D ? "enabled" : "disabled");
+        LOG(logINFO) << "Binary Plot " << (binary2D ? "enabled" : "disabled");
         lblFrom_2->setEnabled(binary2D);
         lblTo_2->setEnabled(binary2D);
         spinFrom_2->setEnabled(binary2D);
@@ -312,8 +310,7 @@ void qTabPlot::GetGapPixels() {
     disconnect(chkGapPixels, SIGNAL(toggled(bool)), this,
                SLOT(SetGapPixels(bool)));
     try {
-        auto retval = det->getRxAddGapPixels().tsquash(
-            "Inconsistent gap pixels enabled for all detectors.");
+        auto retval = det->getGapPixelsinCallback();
         chkGapPixels->setChecked(retval);
     }
     CATCH_DISPLAY("Could not get gap pixels enable.", "qTabPlot::GetGapPixels")
@@ -324,7 +321,7 @@ void qTabPlot::GetGapPixels() {
 void qTabPlot::SetGapPixels(bool enable) {
     LOG(logINFO) << "Setting Gap Pixels Enable to " << enable;
     try {
-        det->setRxAddGapPixels(enable);
+        det->setGapPixelsinCallback(enable);
     }
     CATCH_HANDLE("Could not set gap pixels enable.", "qTabPlot::SetGapPixels",
                  this, &qTabPlot::GetGapPixels)
@@ -434,9 +431,9 @@ void qTabPlot::SetXYRange() {
     for (int i = 0; i < 4; ++i) {
         if (chkVal[i] && !dispVal[i].isEmpty()) {
             double val = dispVal[i].toDouble();
-            LOG(logDEBUG)
-                << "Setting "
-                << qDefs::getRangeAsString(static_cast<qDefs::range>(i))
+            LOG(logDEBUG) << "Setting "
+                          << qDefs::getRangeAsString(
+                                 static_cast<qDefs::range>(i))
                           << " to " << val;
             xyRange[i] = val;
             isRange[i] = true;
@@ -482,10 +479,10 @@ void qTabPlot::MaintainAspectRatio(int dimension) {
     ranges[qDefs::YMAX] = plot->GetYMaximum();
     double idealAspectratio = (ranges[qDefs::XMAX] - ranges[qDefs::XMIN]) /
                               (ranges[qDefs::YMAX] - ranges[qDefs::YMIN]);
-    LOG(logDEBUG) << "Ideal Aspect ratio: " << idealAspectratio
-                       << " for x(" << ranges[qDefs::XMIN] << " - "
-                       << ranges[qDefs::XMAX] << "), y(" << ranges[qDefs::YMIN]
-                       << " - " << ranges[qDefs::YMAX] << ")";
+    LOG(logDEBUG) << "Ideal Aspect ratio: " << idealAspectratio << " for x("
+                  << ranges[qDefs::XMIN] << " - " << ranges[qDefs::XMAX]
+                  << "), y(" << ranges[qDefs::YMIN] << " - "
+                  << ranges[qDefs::YMAX] << ")";
 
     // calculate current aspect ratio
     ranges[qDefs::XMIN] = dispXMin->text().toDouble();
@@ -494,10 +491,10 @@ void qTabPlot::MaintainAspectRatio(int dimension) {
     ranges[qDefs::YMAX] = dispYMax->text().toDouble();
     double currentAspectRatio = (ranges[qDefs::XMAX] - ranges[qDefs::XMIN]) /
                                 (ranges[qDefs::YMAX] - ranges[qDefs::YMIN]);
-    LOG(logDEBUG) << "Current Aspect ratio: " << currentAspectRatio
-                       << " for x(" << ranges[qDefs::XMIN] << " - "
-                       << ranges[qDefs::XMAX] << "), y(" << ranges[qDefs::YMIN]
-                       << " - " << ranges[qDefs::YMAX] << ")";
+    LOG(logDEBUG) << "Current Aspect ratio: " << currentAspectRatio << " for x("
+                  << ranges[qDefs::XMIN] << " - " << ranges[qDefs::XMAX]
+                  << "), y(" << ranges[qDefs::YMIN] << " - "
+                  << ranges[qDefs::YMAX] << ")";
 
     if (currentAspectRatio != idealAspectratio) {
         // dimension: 1(x changed: y adjusted), 0(y changed: x adjusted),
@@ -672,6 +669,8 @@ void qTabPlot::Refresh() {
             break;
         case slsDetectorDefs::JUNGFRAU:
             chkGainPlot->setEnabled(true);
+            chkGapPixels->setEnabled(true);
+            GetGapPixels();
             break;
         case slsDetectorDefs::GOTTHARD2:
             chkGainPlot1D->setEnabled(true);

slsDetectorGui/src/qTabSettings.cpp

@@ -1,6 +1,6 @@
 #include "qTabSettings.h"
-#include "qDefs.h"
 #include "ToString.h"
+#include "qDefs.h"
 #include <QStandardItemModel>
 
 qTabSettings::qTabSettings(QWidget *parent, sls::Detector *detector)

slsDetectorServers/CMakeLists.txt

@@ -1,6 +1,7 @@
 
-add_library(slsProjectCWarnings INTERFACE)
-target_compile_options(slsProjectCWarnings INTERFACE 
+add_library(slsProjectCSettings INTERFACE)
+target_compile_features(slsProjectCSettings INTERFACE c_std_99)
+target_compile_options(slsProjectCSettings INTERFACE 
                                             -Wall
                                             -Wextra
                                             -Wno-unused-parameter #Needs to be slowly mitigated
@@ -13,7 +14,7 @@ target_compile_options(slsProjectCWarnings INTERFACE
                                  )
 
 # Install fake the library
-install(TARGETS slsProjectCWarnings
+install(TARGETS slsProjectCSettings
     EXPORT "${TARGETS_EXPORT_NAME}"
     LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
     ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}

slsDetectorServers/ctbDetectorServer/CMakeLists.txt

@@ -16,6 +16,7 @@ add_executable(ctbDetectorServer_virtual
     ../slsDetectorServer/src/LTC2620.c
     ../slsDetectorServer/src/MAX1932.c
     ../slsDetectorServer/src/programFpgaBlackfin.c
+    ../slsDetectorServer/src/communication_virtual.c
 )
 
 include_directories(
@@ -32,7 +33,8 @@ target_compile_definitions(ctbDetectorServer_virtual
 )
 
 target_link_libraries(ctbDetectorServer_virtual
-    PUBLIC pthread rt slsProjectCWarnings
+    PUBLIC pthread rt slsProjectCSettings
+    m
 )
 
 set_target_properties(ctbDetectorServer_virtual PROPERTIES

slsDetectorServers/ctbDetectorServer/RegisterDefs.h

@@ -10,7 +10,8 @@
 #define FPGA_VERSION_BRD_RVSN_MSK   (0x00FFFFFF << FPGA_VERSION_BRD_RVSN_OFST)
 #define FPGA_VERSION_DTCTR_TYP_OFST (24)
 #define FPGA_VERSION_DTCTR_TYP_MSK  (0x000000FF << FPGA_VERSION_DTCTR_TYP_OFST)
-#define FPGA_VERSION_DTCTR_TYP_CTB_VAL      ((0x4 << FPGA_VERSION_DTCTR_TYP_OFST) & FPGA_VERSION_DTCTR_TYP_MSK)
+#define FPGA_VERSION_DTCTR_TYP_CTB_VAL                                         \
+    ((0x4 << FPGA_VERSION_DTCTR_TYP_OFST) & FPGA_VERSION_DTCTR_TYP_MSK)
 
 /* Fix pattern RO register */
 #define FIX_PATT_REG (0x01 << MEM_MAP_SHIFT)
@@ -57,7 +58,8 @@
 #define STATUS_PLL_PHS_DN_OFST        (23)
 #define STATUS_PLL_PHS_DN_MSK         (0x00000001 << STATUS_PLL_PHS_DN_OFST)
 #define STATUS_PT_CNTRL_STTS_OFF_OFST (24)
-#define STATUS_PT_CNTRL_STTS_OFF_MSK        (0x000000FF << STATUS_PT_CNTRL_STTS_OFF_OFST)
+#define STATUS_PT_CNTRL_STTS_OFF_MSK                                           \
+    (0x000000FF << STATUS_PT_CNTRL_STTS_OFF_OFST)
 #define STATUS_IDLE_MSK (0x677FF)
 
 /* Look at me RO register TODO */
@@ -67,24 +69,30 @@
 #define SYSTEM_STATUS_REG (0x04 << MEM_MAP_SHIFT)
 
 #define SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST (0)
-#define SYSTEM_STATUS_DDR3_CLBRTN_OK_MSK 	(0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST)
+#define SYSTEM_STATUS_DDR3_CLBRTN_OK_MSK                                       \
+    (0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST)
 #define SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST (1)
-#define SYSTEM_STATUS_DDR3_CLBRTN_FL_MSK 	(0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST)
+#define SYSTEM_STATUS_DDR3_CLBRTN_FL_MSK                                       \
+    (0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST)
 #define SYSTEM_STATUS_DDR3_INT_DN_OFST (2)
-#define SYSTEM_STATUS_DDR3_INT_DN_MSK 		(0x00000001 << SYSTEM_STATUS_DDR3_INT_DN_OFST)
+#define SYSTEM_STATUS_DDR3_INT_DN_MSK                                          \
+    (0x00000001 << SYSTEM_STATUS_DDR3_INT_DN_OFST)
 #define SYSTEM_STATUS_RCNFG_PLL_LCK_OFST (3)
-#define SYSTEM_STATUS_RCNFG_PLL_LCK_MSK 	(0x00000001 << SYSTEM_STATUS_RCNFG_PLL_LCK_OFST)
+#define SYSTEM_STATUS_RCNFG_PLL_LCK_MSK                                        \
+    (0x00000001 << SYSTEM_STATUS_RCNFG_PLL_LCK_OFST)
 #define SYSTEM_STATUS_PLL_A_LCK_OFST (4)
 #define SYSTEM_STATUS_PLL_A_LCK_MSK  (0x00000001 << SYSTEM_STATUS_PLL_A_LCK_OFST)
 
-/* PLL Param (Reconfiguratble PLL Parameter) RO register TODO FIXME: Same as PLL_PARAM_REG 0x50 */
+/* PLL Param (Reconfiguratble PLL Parameter) RO register TODO FIXME: Same as
+ * PLL_PARAM_REG 0x50 */
 //#define PLL_PARAM_REG                       (0x05 << MEM_MAP_SHIFT)
 
 /* FIFO Data RO register TODO */
 #define FIFO_DATA_REG (0x06 << MEM_MAP_SHIFT)
 
 #define FIFO_DATA_HRDWR_SRL_NMBR_OFST (0)
-#define FIFO_DATA_HRDWR_SRL_NMBR_MSK        (0x0000FFFF << FIFO_DATA_HRDWR_SRL_NMBR_OFST)
+#define FIFO_DATA_HRDWR_SRL_NMBR_MSK                                           \
+    (0x0000FFFF << FIFO_DATA_HRDWR_SRL_NMBR_OFST)
 //#define FIFO_DATA_WRD_OFST                  (16)
 //#define FIFO_DATA_WRD_MSK                   (0x0000FFFF << FIFO_DATA_WRD_OFST)
 
@@ -114,7 +122,8 @@
 #define API_VERSION_DTCTR_TYP_OFST (24)
 #define API_VERSION_DTCTR_TYP_MSK  (0x000000FF << API_VERSION_DTCTR_TYP_OFST)
 
-/* Time from Start 64 bit RO register. t = GCLK x 50 ns. Reset using CONTROL_CRST. TODO */
+/* Time from Start 64 bit RO register. t = GCLK x 50 ns. Reset using
+ * CONTROL_CRST. TODO */
 #define TIME_FROM_START_LSB_REG (0x10 << MEM_MAP_SHIFT)
 #define TIME_FROM_START_MSB_REG (0x11 << MEM_MAP_SHIFT)
 
@@ -135,12 +144,16 @@
 #define PERIOD_LEFT_MSB_REG (0x19 << MEM_MAP_SHIFT)
 
 /* Exposure Time Left 64 bit RO register */
-//#define EXPTIME_LEFT_LSB_REG                (0x1A << MEM_MAP_SHIFT)            // Not used in FW
-//#define EXPTIME_LEFT_MSB_REG                (0x1B << MEM_MAP_SHIFT)            // Not used in FW
+//#define EXPTIME_LEFT_LSB_REG                (0x1A << MEM_MAP_SHIFT) // Not
+// used in FW #define EXPTIME_LEFT_MSB_REG                (0x1B <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Gates Left 64 bit RO register */
-//#define GATES_LEFT_LSB_REG                  (0x1C << MEM_MAP_SHIFT)            // Not used in FW
-//#define GATES_LEFT_MSB_REG                  (0x1D << MEM_MAP_SHIFT)            // Not used in FW
+//#define GATES_LEFT_LSB_REG                  (0x1C << MEM_MAP_SHIFT) // Not
+// used in FW #define GATES_LEFT_MSB_REG                  (0x1D <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Data In 64 bit RO register TODO */
 #define DATA_IN_LSB_REG (0x1E << MEM_MAP_SHIFT)
@@ -151,14 +164,17 @@
 #define PATTERN_OUT_MSB_REG (0x21 << MEM_MAP_SHIFT)
 
 /* Frames From Start 64 bit RO register TODO */
-//#define FRAMES_FROM_START_LSB_REG           (0x22 << MEM_MAP_SHIFT)            // Not used in FW
-//#define FRAMES_FROM_START_MSB_REG           (0x23 << MEM_MAP_SHIFT)            // Not used in FW
+//#define FRAMES_FROM_START_LSB_REG           (0x22 << MEM_MAP_SHIFT) // Not
+// used in FW #define FRAMES_FROM_START_MSB_REG           (0x23 <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Frames From Start PG 64 bit RO register. Reset using CONTROL_CRST. TODO */
 #define FRAMES_FROM_START_PG_LSB_REG (0x24 << MEM_MAP_SHIFT)
 #define FRAMES_FROM_START_PG_MSB_REG (0x25 << MEM_MAP_SHIFT)
 
-/* Start Frame Time (Measurement Time) 64 bit register (timestamp at a frame start until reset) TODO */
+/* Start Frame Time (Measurement Time) 64 bit register (timestamp at a frame
+ * start until reset) TODO */
 #define START_FRAME_TIME_LSB_REG (0x26 << MEM_MAP_SHIFT)
 #define START_FRAME_TIME_MSB_REG (0x27 << MEM_MAP_SHIFT)
 
@@ -177,9 +193,11 @@
 /* FIFO Digital In Status RO register */
 #define FIFO_DIN_STATUS_REG            (0x3B << MEM_MAP_SHIFT)
 #define FIFO_DIN_STATUS_FIFO_FULL_OFST (30)
-#define FIFO_DIN_STATUS_FIFO_FULL_MSK		(0x00000001 << FIFO_DIN_STATUS_FIFO_FULL_OFST)
+#define FIFO_DIN_STATUS_FIFO_FULL_MSK                                          \
+    (0x00000001 << FIFO_DIN_STATUS_FIFO_FULL_OFST)
 #define FIFO_DIN_STATUS_FIFO_EMPTY_OFST (31)
-#define FIFO_DIN_STATUS_FIFO_EMPTY_MSK		(0x00000001 << FIFO_DIN_STATUS_FIFO_EMPTY_OFST)
+#define FIFO_DIN_STATUS_FIFO_EMPTY_MSK                                         \
+    (0x00000001 << FIFO_DIN_STATUS_FIFO_EMPTY_OFST)
 
 /* FIFO Digital In 64 bit RO register */
 #define FIFO_DIN_LSB_REG (0x3C << MEM_MAP_SHIFT)
@@ -243,9 +261,11 @@
 #define DUMMY_FIFO_CHNNL_SLCT_OFST    (0)
 #define DUMMY_FIFO_CHNNL_SLCT_MSK     (0x0000003F << DUMMY_FIFO_CHNNL_SLCT_OFST)
 #define DUMMY_ANLG_FIFO_RD_STRBE_OFST (8)
-#define DUMMY_ANLG_FIFO_RD_STRBE_MSK        (0x00000001 << DUMMY_ANLG_FIFO_RD_STRBE_OFST)
+#define DUMMY_ANLG_FIFO_RD_STRBE_MSK                                           \
+    (0x00000001 << DUMMY_ANLG_FIFO_RD_STRBE_OFST)
 #define DUMMY_DGTL_FIFO_RD_STRBE_OFST (9)
-#define DUMMY_DGTL_FIFO_RD_STRBE_MSK        (0x00000001 << DUMMY_DGTL_FIFO_RD_STRBE_OFST)
+#define DUMMY_DGTL_FIFO_RD_STRBE_MSK                                           \
+    (0x00000001 << DUMMY_DGTL_FIFO_RD_STRBE_OFST)
 
 /* Receiver IP Address RW register */
 #define RX_IP_REG (0x45 << MEM_MAP_SHIFT)
@@ -313,21 +333,23 @@
 #define CONTROL_STP_ACQSTN_OFST  (1)
 #define CONTROL_STP_ACQSTN_MSK   (0x00000001 << CONTROL_STP_ACQSTN_OFST)
 //#define CONTROL_STRT_FF_TST_OFST            (2)
-//#define CONTROL_STRT_FF_TST_MSK             (0x00000001 << CONTROL_STRT_FF_TST_OFST)
-//#define CONTROL_STP_FF_TST_OFST             (3)
-//#define CONTROL_STP_FF_TST_MSK              (0x00000001 << CONTROL_STP_FF_TST_OFST)
-//#define CONTROL_STRT_RDT_OFST               (4)
-//#define CONTROL_STRT_RDT_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
-//#define CONTROL_STP_RDT_OFST                (5)
-//#define CONTROL_STP_RDT_MSK                 (0x00000001 << CONTROL_STP_RDT_OFST)
+//#define CONTROL_STRT_FF_TST_MSK             (0x00000001 <<
+// CONTROL_STRT_FF_TST_OFST) #define CONTROL_STP_FF_TST_OFST             (3)
+//#define CONTROL_STP_FF_TST_MSK              (0x00000001 <<
+// CONTROL_STP_FF_TST_OFST) #define CONTROL_STRT_RDT_OFST               (4)
+//#define CONTROL_STRT_RDT_MSK                (0x00000001 <<
+// CONTROL_STRT_RDT_OFST) #define CONTROL_STP_RDT_OFST                (5)
+// #define CONTROL_STP_RDT_MSK                 (0x00000001 <<
+// CONTROL_STP_RDT_OFST)
 #define CONTROL_STRT_EXPSR_OFST (6)
 #define CONTROL_STRT_EXPSR_MSK  (0x00000001 << CONTROL_STRT_EXPSR_OFST)
 //#define CONTROL_STP_EXPSR_OFST              (7)
-//#define CONTROL_STP_EXPSR_MSK               (0x00000001 << CONTROL_STP_RDT_OFST)
-//#define CONTROL_STRT_TRN_OFST               (8)
-//#define CONTROL_STRT_TRN_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
+//#define CONTROL_STP_EXPSR_MSK               (0x00000001 <<
+// CONTROL_STP_RDT_OFST) #define CONTROL_STRT_TRN_OFST               (8) #define
+// CONTROL_STRT_TRN_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
 //#define CONTROL_STP_TRN_OFST                (9)
-//#define CONTROL_STP_TRN_MSK                 (0x00000001 << CONTROL_STP_RDT_OFST)
+//#define CONTROL_STP_TRN_MSK                 (0x00000001 <<
+// CONTROL_STP_RDT_OFST)
 #define CONTROL_CRE_RST_OFST    (10)
 #define CONTROL_CRE_RST_MSK     (0x00000001 << CONTROL_CRE_RST_OFST)
 #define CONTROL_PRPHRL_RST_OFST (11) // Only GBE10?
@@ -335,7 +357,8 @@
 #define CONTROL_MMRY_RST_OFST   (12)
 #define CONTROL_MMRY_RST_MSK    (0x00000001 << CONTROL_MMRY_RST_OFST)
 //#define CONTROL_PLL_RCNFG_WR_OFST           (13)
-//#define CONTROL_PLL_RCNFG_WR_MSK            (0x00000001 << CONTROL_PLL_RCNFG_WR_OFST)
+//#define CONTROL_PLL_RCNFG_WR_MSK            (0x00000001 <<
+// CONTROL_PLL_RCNFG_WR_OFST)
 #define CONTROL_SND_10GB_PCKT_OFST   (14)
 #define CONTROL_SND_10GB_PCKT_MSK    (0x00000001 << CONTROL_SND_10GB_PCKT_OFST)
 #define CONTROL_CLR_ACQSTN_FIFO_OFST (15)
@@ -348,7 +371,8 @@
 #define PLL_CNTRL_REG (0x51 << MEM_MAP_SHIFT)
 
 #define PLL_CNTRL_RCNFG_PRMTR_RST_OFST (0)
-#define PLL_CNTRL_RCNFG_PRMTR_RST_MSK		(0x00000001 << PLL_CNTRL_RCNFG_PRMTR_RST_OFST)
+#define PLL_CNTRL_RCNFG_PRMTR_RST_MSK                                          \
+    (0x00000001 << PLL_CNTRL_RCNFG_PRMTR_RST_OFST)
 #define PLL_CNTRL_WR_PRMTR_OFST (2)
 #define PLL_CNTRL_WR_PRMTR_MSK  (0x00000001 << PLL_CNTRL_WR_PRMTR_OFST)
 #define PLL_CNTRL_PLL_RST_OFST  (3)
@@ -378,7 +402,8 @@
 #define PATTERN_LOOP_0_ADDR_REG (0x54 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_0_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_0_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_0_ADDR_STRT_OFST)
+#define PATTERN_LOOP_0_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_0_ADDR_STRT_OFST)
 #define PATTERN_LOOP_0_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_0_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_0_ADDR_STP_OFST)
 
@@ -389,7 +414,8 @@
 #define PATTERN_LOOP_1_ADDR_REG (0x56 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_1_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_1_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_1_ADDR_STRT_OFST)
+#define PATTERN_LOOP_1_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_1_ADDR_STRT_OFST)
 #define PATTERN_LOOP_1_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_1_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_1_ADDR_STP_OFST)
 
@@ -400,7 +426,8 @@
 #define PATTERN_LOOP_2_ADDR_REG (0x58 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_2_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_2_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_2_ADDR_STRT_OFST)
+#define PATTERN_LOOP_2_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_2_ADDR_STRT_OFST)
 #define PATTERN_LOOP_2_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_2_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_2_ADDR_STP_OFST)
 
@@ -412,7 +439,7 @@
 
 #define PATTERN_WAIT_0_ADDR_OFST (0)
 #define PATTERN_WAIT_0_ADDR_MSK  (0x00001FFF << PATTERN_WAIT_0_ADDR_OFST)
-//FIXME: is mask 3FF
+// FIXME: is mask 3FF
 
 /* Pattern Wait 1 RW regiser */
 #define PATTERN_WAIT_1_ADDR_REG (0x5B << MEM_MAP_SHIFT)
@@ -445,7 +472,6 @@
 /* Number of Words RW register TODO */
 #define NUMBER_OF_WORDS_REG (0x5F << MEM_MAP_SHIFT)
 
-
 /* Delay 64 bit RW register. t = DLY x 50 ns. */
 #define DELAY_LSB_REG (0x60 << MEM_MAP_SHIFT)
 #define DELAY_MSB_REG (0x61 << MEM_MAP_SHIFT)
@@ -463,12 +489,14 @@
 #define PERIOD_MSB_REG (0x67 << MEM_MAP_SHIFT)
 
 /* Period 64 bit RW register */
-//#define EXPTIME_LSB_REG    			    (0x68 << MEM_MAP_SHIFT)                 // Not used in FW
-//#define EXPTIME_MSB_REG    			    (0x69 << MEM_MAP_SHIFT)                 // Not used in FW
+//#define EXPTIME_LSB_REG    			    (0x68 << MEM_MAP_SHIFT) //
+// Not used in FW #define EXPTIME_MSB_REG    			    (0x69 <<
+// MEM_MAP_SHIFT)                 // Not used in FW
 
 /* Gates 64 bit RW register */
-//#define GATES_LSB_REG                      (0x6A << MEM_MAP_SHIFT)                 // Not used in FW
-//#define GATES_MSB_REG                      (0x6B << MEM_MAP_SHIFT)                 // Not used in FW
+//#define GATES_LSB_REG                      (0x6A << MEM_MAP_SHIFT) // Not used
+// in FW #define GATES_MSB_REG                      (0x6B << MEM_MAP_SHIFT) //
+// Not used in FW
 
 /* Pattern IO Control 64 bit RW regiser
  * Each bit configured as output(1)/ input(0) */
@@ -505,7 +533,6 @@
 #define READOUT_10G_ENABLE_DGTL_OFST (8)
 #define READOUT_10G_ENABLE_DGTL_MSK  (0x00000001 << READOUT_10G_ENABLE_DGTL_OFST)
 
-
 /* Digital Bit External Trigger RW register */
 #define DBIT_EXT_TRG_REG (0x7B << MEM_MAP_SHIFT)
 
@@ -517,11 +544,15 @@
 /* Pin Delay 0 RW register */
 #define OUTPUT_DELAY_0_REG              (0x7C << MEM_MAP_SHIFT)
 #define OUTPUT_DELAY_0_OTPT_STTNG_STEPS (25)
-#define OUTPUT_DELAY_0_OTPT_STTNG_OFST      (0)     //t = OTPT_STTNG * 25 ps, max for Cyclone V = 775 ps
-#define OUTPUT_DELAY_0_OTPT_STTNG_MSK       (0x0000001F << OUTPUT_DELAY_0_OTPT_STTNG_OFST)
-// 1: load dynamic output settings, 0: trigger start of dynamic output delay configuration pn falling edge of ODT (output delay trigger) bit
+#define OUTPUT_DELAY_0_OTPT_STTNG_OFST                                         \
+    (0) // t = OTPT_STTNG * 25 ps, max for Cyclone V = 775 ps
+#define OUTPUT_DELAY_0_OTPT_STTNG_MSK                                          \
+    (0x0000001F << OUTPUT_DELAY_0_OTPT_STTNG_OFST)
+// 1: load dynamic output settings, 0: trigger start of dynamic output delay
+// configuration pn falling edge of ODT (output delay trigger) bit
 #define OUTPUT_DELAY_0_OTPT_TRGGR_OFST (31)
-#define OUTPUT_DELAY_0_OTPT_TRGGR_MSK       (0x00000001 << OUTPUT_DELAY_0_OTPT_TRGGR_OFST)
+#define OUTPUT_DELAY_0_OTPT_TRGGR_MSK                                          \
+    (0x00000001 << OUTPUT_DELAY_0_OTPT_TRGGR_OFST)
 #define OUTPUT_DELAY_0_OTPT_TRGGR_LD_VAL   (1)
 #define OUTPUT_DELAY_0_OTPT_TRGGR_STRT_VAL (0)
 
@@ -546,10 +577,7 @@
 #define I2C_SCL_LOW_COUNT_REG         (0x108 << MEM_MAP_SHIFT)
 #define I2C_SCL_HIGH_COUNT_REG        (0x109 << MEM_MAP_SHIFT)
 #define I2C_SDA_HOLD_REG              (0x10A << MEM_MAP_SHIFT)
-//fixme: upto 0x10f
+// fixme: upto 0x10f
 
 /* Round Robin  */
 #define RXR_ENDPOINT_START_REG (0x1000 << MEM_MAP_SHIFT)
-
-
-

slsDetectorServers/ctbDetectorServer/slsDetectorServer_defs.h

@@ -1,7 +1,6 @@
 #pragma once
-#include "sls_detector_defs.h"
 #include "RegisterDefs.h"
-
+#include "sls_detector_defs.h"
 
 #define MIN_REQRD_VRSN_T_RD_API 0x181130
 #define REQRD_FRMWR_VRSN        0x191127
@@ -15,13 +14,13 @@ typedef struct udp_header_struct {
     uint16_t udp_destmac_lsb;
     uint32_t udp_srcmac_lsb;
     uint8_t ip_tos;
-	uint8_t		ip_ihl: 4, ip_ver: 4;
+    uint8_t ip_ihl : 4, ip_ver : 4;
     uint16_t udp_ethertype;
     uint16_t ip_identification;
     uint16_t ip_totallength;
     uint8_t ip_protocol;
     uint8_t ip_ttl;
-	uint16_t	ip_fragmentoffset: 13, ip_flags: 3;
+    uint16_t ip_fragmentoffset : 13, ip_flags : 3;
     uint16_t ip_srcip_msb;
     uint16_t ip_checksum;
     uint16_t ip_destip_msb;
@@ -36,11 +35,54 @@ typedef struct udp_header_struct {
 #define UDP_IP_HEADER_LENGTH_BYTES (28)
 
 /* Enums */
-enum ADCINDEX				{V_PWR_IO, V_PWR_A, V_PWR_B, V_PWR_C, V_PWR_D, I_PWR_IO, I_PWR_A, I_PWR_B, I_PWR_C, I_PWR_D, S_ADC0, S_ADC1, S_ADC2, S_ADC3, S_ADC4, S_ADC5, S_ADC6, S_ADC7, S_TMP};
-enum DACINDEX               {D0, D1, D2, D3, D4, D5, D6, D7, D8, D9,
-                             D10, D11, D12, D13, D14, D15, D16, D17,
-                             D_PWR_D, D_PWR_CHIP, D_PWR_C, D_PWR_B, D_PWR_A, D_PWR_IO};
-enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
+enum ADCINDEX {
+    V_PWR_IO,
+    V_PWR_A,
+    V_PWR_B,
+    V_PWR_C,
+    V_PWR_D,
+    I_PWR_IO,
+    I_PWR_A,
+    I_PWR_B,
+    I_PWR_C,
+    I_PWR_D,
+    S_ADC0,
+    S_ADC1,
+    S_ADC2,
+    S_ADC3,
+    S_ADC4,
+    S_ADC5,
+    S_ADC6,
+    S_ADC7,
+    S_TMP
+};
+enum DACINDEX {
+    D0,
+    D1,
+    D2,
+    D3,
+    D4,
+    D5,
+    D6,
+    D7,
+    D8,
+    D9,
+    D10,
+    D11,
+    D12,
+    D13,
+    D14,
+    D15,
+    D16,
+    D17,
+    D_PWR_D,
+    D_PWR_CHIP,
+    D_PWR_C,
+    D_PWR_B,
+    D_PWR_A,
+    D_PWR_IO
+};
+enum CLKINDEX { RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS };
 #define CLK_NAMES "run", "adc", "sync", "dbit"
 
 /* Hardware Definitions */
@@ -67,7 +109,7 @@ enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
 #define DEFAULT_NUM_FRAMES   (1)
 #define DEFAULT_EXPTIME      (0)
 #define DEFAULT_NUM_CYCLES   (1)
-#define DEFAULT_PERIOD				(1 * 1000 * 1000)	//ns
+#define DEFAULT_PERIOD       (1 * 1000 * 1000) // ns
 #define DEFAULT_DELAY        (0)
 #define DEFAULT_HIGH_VOLTAGE (0)
 #define DEFAULT_VLIMIT       (-100)
@@ -85,16 +127,21 @@ enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
 #define VCHIP_MIN_MV    (1673)
 #define VCHIP_MAX_MV    (2668) // min dac val
 #define POWER_RGLTR_MIN (636)
-#define POWER_RGLTR_MAX             (2638) // min dac val (not vchip-max) because of dac conversions
+#define POWER_RGLTR_MAX                                                        \
+    (2638) // min dac val (not vchip-max) because of dac conversions
 #define VCHIP_POWER_INCRMNT (200)
 #define VIO_MIN_MV          (1200) // for fpga to function
 
 /* Defines in the Firmware */
 #define MAX_PATTERN_LENGTH (0x2000)
-#define DIGITAL_IO_DELAY_MAXIMUM_PS	((OUTPUT_DELAY_0_OTPT_STTNG_MSK >> OUTPUT_DELAY_0_OTPT_STTNG_OFST) * OUTPUT_DELAY_0_OTPT_STTNG_STEPS)
+#define DIGITAL_IO_DELAY_MAXIMUM_PS                                            \
+    ((OUTPUT_DELAY_0_OTPT_STTNG_MSK >> OUTPUT_DELAY_0_OTPT_STTNG_OFST) *       \
+     OUTPUT_DELAY_0_OTPT_STTNG_STEPS)
 #define MAX_PHASE_SHIFTS_STEPS (8)
 
-#define WAIT_TME_US_FR_ACQDONE_REG 	(100) // wait time in us after acquisition done to ensure there is no data in fifo
+#define WAIT_TME_US_FR_ACQDONE_REG                                             \
+    (100) // wait time in us after acquisition done to ensure there is no data
+          // in fifo
 #define WAIT_TIME_US_PLL           (10 * 1000)
 #define WAIT_TIME_US_STP_ACQ       (100)
 #define WAIT_TIME_CONFIGURE_MAC    (2 * 1000 * 1000)
@@ -109,4 +156,3 @@ enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
 
 #define MAXIMUM_ADC_CLK  (65)
 #define PLL_VCO_FREQ_MHZ (800)
-

slsDetectorServers/eigerDetectorServer/9mhvserial_bf.c

@@ -1,14 +1,14 @@
 #include "ansi.h"
 
-#include <termios.h>  	/* POSIX terminal control definitions */
+#include <errno.h>
+#include <fcntl.h>         // File control definitions
+#include <linux/i2c-dev.h> // I2C_SLAVE, __u8 reg
 #include <stdio.h>
 #include <stdlib.h>    // atoi
-#include <fcntl.h>			// File control definitions
-#include <sys/ioctl.h>		// ioctl
-#include <unistd.h>			// read, close
 #include <string.h>    // memset
-#include <linux/i2c-dev.h>	// I2C_SLAVE, __u8 reg
-#include <errno.h>
+#include <sys/ioctl.h> // ioctl
+#include <termios.h>   /* POSIX terminal control definitions */
+#include <unistd.h>    // read, close
 
 #define PORTNAME           "/dev/ttyBF1"
 #define GOODBYE            200
@@ -18,43 +18,41 @@
 //#define I2C_DEVICE_ADDRESS	0x48
 #define I2C_REGISTER_ADDRESS 0x40
 
+int i2c_open(const char *file, unsigned int addr) {
 
-
-int i2c_open(const char* file,unsigned int addr){
-
-	//device file
-	int fd = open( file, O_RDWR );
+    // device file
+    int fd = open(file, O_RDWR);
     if (fd < 0) {
-		LOG(logERROR, ("Warning: Unable to open file %s\n",file));
+        LOG(logERROR, ("Warning: Unable to open file %s\n", file));
         return -1;
     }
 
-	//device address
-	if( ioctl( fd, I2C_SLAVE, addr&0x7F ) < 0 )	{
-		LOG(logERROR, ("Warning: Unable to set slave address:0x%x \n",addr));
+    // device address
+    if (ioctl(fd, I2C_SLAVE, addr & 0x7F) < 0) {
+        LOG(logERROR, ("Warning: Unable to set slave address:0x%x \n", addr));
         return -2;
     }
     return fd;
 }
 
-
-int i2c_read(){
+int i2c_read() {
 
     int fd = i2c_open(I2C_DEVICE_FILE, I2C_DEVICE_ADDRESS);
     __u8 reg = I2C_REGISTER_ADDRESS & 0xff;
 
     unsigned char buf = reg;
-	if (write(fd, &buf, 1)!= 1){
-		LOG(logERROR, ("Warning: Unable to write read request to register %d\n", reg));
+    if (write(fd, &buf, 1) != 1) {
+        LOG(logERROR,
+            ("Warning: Unable to write read request to register %d\n", reg));
         return -1;
     }
-	//read and update value (but old value read out)
-	if(read(fd, &buf, 1) != 1){
+    // read and update value (but old value read out)
+    if (read(fd, &buf, 1) != 1) {
         LOG(logERROR, ("Warning: Unable to read register %d\n", reg));
         return -2;
     }
-	//read again to read the updated value
-	if(read(fd, &buf, 1) != 1){
+    // read again to read the updated value
+    if (read(fd, &buf, 1) != 1) {
         LOG(logERROR, ("Warning: Unable to read register %d\n", reg));
         return -2;
     }
@@ -62,13 +60,12 @@ int i2c_read(){
     return buf;
 }
 
-
-int i2c_write(unsigned int value){
+int i2c_write(unsigned int value) {
 
     __u8 val = value & 0xff;
 
     int fd = i2c_open(I2C_DEVICE_FILE, I2C_DEVICE_ADDRESS);
-	if(fd < 0)
+    if (fd < 0)
         return fd;
 
     __u8 reg = I2C_REGISTER_ADDRESS & 0xff;
@@ -76,7 +73,8 @@ int i2c_write(unsigned int value){
     buf[0] = reg;
     buf[1] = val;
     if (write(fd, buf, 2) != 2) {
-		LOG(logERROR, ("Warning: Unable to write %d to register %d\n",val, reg));
+        LOG(logERROR,
+            ("Warning: Unable to write %d to register %d\n", val, reg));
         return -1;
     }
 
@@ -84,22 +82,18 @@ int i2c_write(unsigned int value){
     return 0;
 }
 
-
-
-
-
-int main(int argc, char* argv[]) {
+int main(int argc, char *argv[]) {
 
     int fd = open(PORTNAME, O_RDWR | O_NOCTTY | O_SYNC);
-	if(fd < 0){
+    if (fd < 0) {
         LOG(logERROR, ("Warning: Unable to open port %s\n", PORTNAME));
         return -1;
     }
-	LOG(logINFO, ("opened port at %s\n",PORTNAME));
+    LOG(logINFO, ("opened port at %s\n", PORTNAME));
 
     struct termios serial_conf;
     // reset structure
-	memset(&serial_conf,0,sizeof(serial_conf));
+    memset(&serial_conf, 0, sizeof(serial_conf));
     // control options
     serial_conf.c_cflag = B2400 | CS8 | CREAD | CLOCAL;
     // input options
@@ -109,37 +103,37 @@ int main(int argc, char* argv[]) {
     // line options
     serial_conf.c_lflag = ICANON;
     // flush input
-	if(tcflush(fd, TCIOFLUSH) < 0){
+    if (tcflush(fd, TCIOFLUSH) < 0) {
         LOG(logERROR, ("Warning: error form tcflush %d\n", errno));
         return 0;
     }
-	// set new options for the port, TCSANOW:changes occur immediately without waiting for data to complete
-	if(tcsetattr(fd, TCSANOW, &serial_conf) < 0){
+    // set new options for the port, TCSANOW:changes occur immediately without
+    // waiting for data to complete
+    if (tcsetattr(fd, TCSANOW, &serial_conf) < 0) {
         LOG(logERROR, ("Warning: error form tcsetattr %d\n", errno));
         return 0;
     }
 
-	if(tcsetattr(fd, TCSAFLUSH, &serial_conf) < 0){
+    if (tcsetattr(fd, TCSAFLUSH, &serial_conf) < 0) {
         LOG(logERROR, ("Warning: error form tcsetattr %d\n", errno));
         return 0;
     }
 
     int ret = 0;
     int n = 0;
-	int ival= 0;
+    int ival = 0;
     char buffer[BUFFERSIZE];
-	memset(buffer,0,BUFFERSIZE);
-	buffer[BUFFERSIZE-1] = '\n';
+    memset(buffer, 0, BUFFERSIZE);
+    buffer[BUFFERSIZE - 1] = '\n';
     LOG(logINFO, ("Ready...\n"));
 
-
-	while(ret != GOODBYE){
-		memset(buffer,0,BUFFERSIZE);
-		n = read(fd,buffer,BUFFERSIZE);
+    while (ret != GOODBYE) {
+        memset(buffer, 0, BUFFERSIZE);
+        n = read(fd, buffer, BUFFERSIZE);
         LOG(logDEBUG1, ("Received %d Bytes\n", n));
-		LOG(logINFO, ("Got message: '%s'\n",buffer));
+        LOG(logINFO, ("Got message: '%s'\n", buffer));
 
-		switch(buffer[0]){
+        switch (buffer[0]) {
         case '\0':
             LOG(logINFO, ("Got Start (Detector restart)\n"));
             break;
@@ -147,43 +141,44 @@ int main(int argc, char* argv[]) {
             LOG(logINFO, ("Got Start \n"));
             break;
         case 'p':
-			if (!sscanf(&buffer[1],"%d",&ival)){
+            if (!sscanf(&buffer[1], "%d", &ival)) {
                 LOG(logERROR, ("Warning: cannot scan voltage value\n"));
                 break;
             }
             // ok/ fail
-			memset(buffer,0,BUFFERSIZE);
-			buffer[BUFFERSIZE-1] = '\n';
-			if(i2c_write(ival)<0)
-				strcpy(buffer,"fail ");
+            memset(buffer, 0, BUFFERSIZE);
+            buffer[BUFFERSIZE - 1] = '\n';
+            if (i2c_write(ival) < 0)
+                strcpy(buffer, "fail ");
             else
-				strcpy(buffer,"success ");
-			LOG(logINFO, ("Sending: '%s'\n",buffer));
+                strcpy(buffer, "success ");
+            LOG(logINFO, ("Sending: '%s'\n", buffer));
             n = write(fd, buffer, BUFFERSIZE);
             LOG(logDEBUG1, ("Sent %d Bytes\n", n));
             break;
 
         case 'g':
             ival = i2c_read();
-			//ok/ fail
-			memset(buffer,0,BUFFERSIZE);
-			buffer[BUFFERSIZE-1] = '\n';
-			if(ival < 0)
-				strcpy(buffer,"fail ");
+            // ok/ fail
+            memset(buffer, 0, BUFFERSIZE);
+            buffer[BUFFERSIZE - 1] = '\n';
+            if (ival < 0)
+                strcpy(buffer, "fail ");
             else
-				strcpy(buffer,"success ");
+                strcpy(buffer, "success ");
             n = write(fd, buffer, BUFFERSIZE);
-			LOG(logINFO, ("Sending: '%s'\n",buffer));
+            LOG(logINFO, ("Sending: '%s'\n", buffer));
             LOG(logDEBUG1, ("Sent %d Bytes\n", n));
-			//value
-			memset(buffer,0,BUFFERSIZE);
-			buffer[BUFFERSIZE-1] = '\n';
-			if(ival >= 0){
-				LOG(logINFO, ("Sending: '%d'\n",ival));
-				sprintf(buffer,"%d ",ival);
+            // value
+            memset(buffer, 0, BUFFERSIZE);
+            buffer[BUFFERSIZE - 1] = '\n';
+            if (ival >= 0) {
+                LOG(logINFO, ("Sending: '%d'\n", ival));
+                sprintf(buffer, "%d ", ival);
                 n = write(fd, buffer, BUFFERSIZE);
                 LOG(logINFO, ("Sent %d Bytes\n", n));
-			}else LOG(logERROR, ("%s\n",buffer));
+            } else
+                LOG(logERROR, ("%s\n", buffer));
             break;
 
         case 'e':
@@ -191,7 +186,7 @@ int main(int argc, char* argv[]) {
             ret = GOODBYE;
             break;
         default:
-			LOG(logERROR, ("Unknown Command. buffer:'%s'\n",buffer));
+            LOG(logERROR, ("Unknown Command. buffer:'%s'\n", buffer));
             break;
         }
     }