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dataReady called

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git-svn-id: file:///afs/psi.ch/project/sls_det_software/svn/slsDetectorSoftware@288 951219d9-93cf-4727-9268-0efd64621fa3
This commit is contained in:
bergamaschi 2012-10-10 08:12:42 +00:00
parent 7f8f89f89d
commit b75b09cc7b
10 changed files with 160 additions and 58 deletions
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30
slsDetectorSoftware/multiSlsDetector/multiSlsDetector.cpp
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@ -238,6 +238,9 @@ multiSlsDetector::multiSlsDetector(int id) : slsDetectorUtils(), shmId(-1)
flatFieldFile=thisMultiDetector->flatFieldFile;
badChanFile=thisMultiDetector->badChanFile;
timerValue=thisMultiDetector->timerValue;
expTime=&timerValue[ACQUISITION_TIME];
currentSettings=&thisMultiDetector->currentSettings;
currentThresholdEV=&thisMultiDetector->currentThresholdEV;
filePath=thisMultiDetector->filePath;
@ -1675,8 +1678,9 @@ int multiSlsDetector::setFlatFieldCorrection(string fname){
chpm[im]=getChansPerMod(im);
mMask[im]=im;
}
if ((postProcessingFuncs::calculateFlatField(&nm, chpm, mMask, badChannelMask, data, ffcoefficients, fferrors))) {
fillModuleMask(mMask);
if ((postProcessingFuncs::calculateFlatField(&nm, chpm, mMask, badChannelMask, data, ffcoefficients, fferrors))>=0) {
strcpy(thisMultiDetector->flatFieldFile,fname.c_str());
@ -1684,7 +1688,8 @@ int multiSlsDetector::setFlatFieldCorrection(string fname){
setFlatFieldCorrection(ffcoefficients, fferrors);
}
} else
std::cout<< "Calculated flat field from file " << fname << " is not valid " << nch << std::endl;
} else {
std::cout<< "Flat field from file " << fname << " is not valid " << nch << std::endl;
}
@ -1693,6 +1698,25 @@ int multiSlsDetector::setFlatFieldCorrection(string fname){
return thisMultiDetector->correctionMask&(1<<FLAT_FIELD_CORRECTION);
}
int multiSlsDetector::fillModuleMask(int *mM) {
int imod=0, off=0;
if (mM) {
for (int i=0; i<thisMultiDetector->numberOfDetectors; i++) {
if (detectors[i]) {
for (int im=0; im<detectors[i]->getNMods(); im++) {
mM[imod]=im+off;
imod++;
}
off+=detectors[i]->getMaxMods();
}
}
}
return getNMods();
}
int multiSlsDetector::setFlatFieldCorrection(double *corr, double *ecorr) {
int ichdet=0;

2
slsDetectorSoftware/multiSlsDetector/multiSlsDetector.h
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@ -1079,7 +1079,7 @@ class multiSlsDetector : public slsDetectorUtils {
string getReceiverLastClientIP();
int fillModuleMask(int *mM);
protected:

13
slsDetectorSoftware/slsDetector/slsDetector.cpp
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@ -657,6 +657,8 @@ int slsDetector::initializeDetectorSize(detectorType type) {
flatFieldFile=thisDetector->flatFieldFile;
badChanFile=thisDetector->badChanFile;
timerValue=thisDetector->timerValue;
expTime=&timerValue[ACQUISITION_TIME];
currentSettings=&thisDetector->currentSettings;
currentThresholdEV=&thisDetector->currentThresholdEV;
filePath=thisDetector->filePath;
@ -4087,8 +4089,9 @@ int slsDetector::setFlatFieldCorrection(string fname)
chpm[im]=getChansPerMod(im);
mMask[im]=im;
}
fillModuleMask(mMask);
if ((postProcessingFuncs::calculateFlatField(&nm, chpm, mMask, badChannelMask, data, ffcoefficients, fferrors))) {
if ((postProcessingFuncs::calculateFlatField(&nm, chpm, mMask, badChannelMask, data, ffcoefficients, fferrors))>=0) {
strcpy(thisDetector->flatFieldFile,fname.c_str());
@ -4107,7 +4110,13 @@ int slsDetector::setFlatFieldCorrection(string fname)
}
int slsDetector::fillModuleMask(int *mM){
if (mM)
for (int i=0; i<getNMods(); i++)
mM[i]=i;
return getNMods();
}
int slsDetector::setFlatFieldCorrection(double *corr, double *ecorr) {

3
slsDetectorSoftware/slsDetector/slsDetector.h
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@ -1452,8 +1452,7 @@ typedef struct sharedSlsDetector {
/returns OK
*/
int updateReceiver();
int fillModuleMask(int *mM);
protected:

7
slsDetectorSoftware/slsDetector/slsDetectorUtils.cpp
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@ -33,7 +33,6 @@ slsDetectorUtils::slsDetectorUtils() {
cout << "done " << endl;
#endif
expTime=timerValue+ACQUISITION_TIME;
};
@ -62,7 +61,7 @@ void slsDetectorUtils::acquire(int delflag){
if ((*correctionMask&(1<< ANGULAR_CONVERSION)) || (*correctionMask&(1<< I0_NORMALIZATION)) || getActionMode(angCalLog) || (getScanMode(0)==positionScan)|| (getScanMode(0)==positionScan)) {
if ((*correctionMask&(1<< ANGULAR_CONVERSION)) || (*correctionMask&(1<< I0_NORMALIZATION)) || getActionMode(angCalLog) || (getScanMode(0)==positionScan)|| (getScanMode(1)==positionScan)) {
if (connectChannels==0)
if (connect_channels) {
connect_channels(CCarg);
@ -176,8 +175,10 @@ void slsDetectorUtils::acquire(int delflag){
} else
break;
pthread_mutex_lock(&mp);
createFileName();
pthread_mutex_unlock(&mp);
if (*stoppedFlag==0) {
executeAction(scriptBefore);

8
slsDetectorSoftware/slsDetectorAnalysis/fileIO.h
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@ -108,7 +108,7 @@ class fileIO : public fileIOStatic, public virtual slsDetectorBase {
\returns OK or FAIL if it could not write the file or data=NULL
*/
int writeDataFile(ofstream &outfile, double *data, double *err=NULL, double *ang=NULL, char dataformat='f', int nch=-1, int offset=0);
virtual int writeDataFile(ofstream &outfile, double *data, double *err=NULL, double *ang=NULL, char dataformat='f', int nch=-1, int offset=0);
/**
@ -126,7 +126,7 @@ class fileIO : public fileIOStatic, public virtual slsDetectorBase {
\param offset start channel number
\returns OK or FAIL if it could not write the file or data=NULL
*/
int writeDataFile(ofstream &outfile, int *data, int offset=0);
virtual int writeDataFile(ofstream &outfile, int *data, int offset=0);
@ -145,7 +145,7 @@ class fileIO : public fileIOStatic, public virtual slsDetectorBase {
\param offset start channel number
\returns OK or FAIL if it could not write the file or data=NULL
*/
int writeDataFile(ofstream &outfile, short int *data, int offset=0);
virtual int writeDataFile(ofstream &outfile, short int *data, int offset=0);
/**
@ -208,7 +208,7 @@ class fileIO : public fileIOStatic, public virtual slsDetectorBase {
protected:
void incrementFileIndex() { (*fileIndex)++;};
void incrementFileIndex() { (*fileIndex)++; };
string getCurrentFileName(){return currentFileName;};

9
slsDetectorSoftware/slsDetectorAnalysis/fileIOStatic.h
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@ -142,7 +142,10 @@ class fileIOStatic {
static int writeDataFile(string fname, int nch, double *data, double *err=NULL, double *ang=NULL, char dataformat='f'){ \
ofstream outfile; \
if (data==NULL) return slsDetectorDefs::FAIL; \
if (data==NULL) { \
cout << "No data to write!" << endl; \
return slsDetectorDefs::FAIL; \
} \
outfile.open (fname.c_str(),ios_base::out); \
if (outfile.is_open()) { \
writeDataFile(outfile, nch, data, err, ang, dataformat, 0); \
@ -167,8 +170,10 @@ class fileIOStatic {
*/
static int writeDataFile(ofstream &outfile, int nch, double *data, double *err=NULL, double *ang=NULL, char dataformat='f', int offset=0){ \
int idata; \
if (data==NULL) \
if (data==NULL) { \
cout << "No data to write!" << endl; \
return slsDetectorDefs::FAIL; \
} \
for (int ichan=0; ichan<nch; ichan++) { \
if (ang==NULL) { \
outfile << ichan+offset << " "; \

95
slsDetectorSoftware/slsDetectorAnalysis/postProcessing.cpp
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@ -7,7 +7,7 @@
postProcessing::postProcessing(): expTime(NULL){
postProcessing::postProcessing(): expTime(NULL), ang(NULL), val(NULL), err(NULL){
pthread_mutex_t mp1 = PTHREAD_MUTEX_INITIALIZER;
mp=mp1;
pthread_mutex_init(&mp, NULL);
@ -45,37 +45,39 @@ void postProcessing::processFrame(int *myData, int delflag) {
// double *fdata=NULL;
#ifdef VERBOSE
cout << "start processing"<< endl;
cout << "start processing"<< endl;
#endif
incrementProgress();
#ifdef VERBOSE
cout << "prog incremented"<< endl;
cout << "prog incremented"<< endl;
#endif
/** decode data */
fdata=decodeData(myData, fdata);
fdata=decodeData(myData, fdata);
#ifdef VERBOSE
cout << "decode"<< endl;
cout << "decode"<< endl;
#endif
fname=createFileName();
#ifdef VERBOSE
pthread_mutex_lock(&mp);
fname=createFileName();
pthread_mutex_unlock(&mp);
#ifdef VERBOSE
cout << "fname is " << fname << endl;
#endif
//Checking for write flag
if(*correctionMask&(1<<WRITE_FILE)) {
if((*correctionMask)&(1<<WRITE_FILE)) {
#ifdef VERBOSE
cout << "writing raw data " << endl;
#endif
//uses static function?!?!?!?
//uses static function?!?!?!?
writeDataFile (fname+string(".raw"),fdata, NULL, NULL, 'i');
#ifdef VERBOSE
@ -92,15 +94,24 @@ void postProcessing::processFrame(int *myData, int delflag) {
cout << "done" << endl;
#endif
}
if (*correctionMask & ~(1<<WRITE_FILE))
if ((*correctionMask) & ~(1<<WRITE_FILE)) {
doProcessing(fdata,delflag, fname);
} else
if (dataReady) {
thisData=new detectorData(NULL,fdata,NULL,getCurrentProgress(),(fname+string(".raw")).c_str(),getTotalNumberOfChannels());
dataReady(thisData, pCallbackArg);
delete thisData;
fdata=NULL;
}
delete [] myData;
delete [] fdata;
if (fdata)
delete [] fdata;
myData=NULL;
fdata=NULL;
#ifdef VERBOSE
cout << "Pop data queue " << *fileIndex << endl;
#endif
@ -113,7 +124,7 @@ void postProcessing::processFrame(int *myData, int delflag) {
#endif
popDataQueue(); //remove the data from the queue
#ifdef VERBOSE
cout << "Pop data queue " << *fileIndex << endl;
cout << "Pop data queue " << *fileIndex << endl;
#endif
@ -133,12 +144,14 @@ void postProcessing::doProcessing(double *lfdata, int delflag, string fname) {
cout << "do processing - data size is " << arraySize << endl;
#endif
if (*correctionMask&(1<< ANGULAR_CONVERSION))
ang=new double[arraySize];
else
ang=NULL;
double *ang=new double[arraySize];
double *val=new double[arraySize];
double *err=new double[arraySize];
val=new double[arraySize];
err=new double[arraySize];
int np;
detectorData *thisData;
#ifdef VERBOSE
cout << "arrays allocated " << endl;
@ -153,10 +166,10 @@ void postProcessing::doProcessing(double *lfdata, int delflag, string fname) {
double t=0;
// if (expTime)
// t=(*expTime)*1E-9;
//else
// cout << "no pointer to exptime" << endl;
if (expTime)
t=(*expTime)*1E-9;
else
cout << "no pointer to exptime" << endl;
#ifdef VERBOSE
cout << "exptime is "<< t << endl;
#endif
@ -172,7 +185,7 @@ void postProcessing::doProcessing(double *lfdata, int delflag, string fname) {
cout << "add frame" << endl;
#endif
ppFun->addFrame(lfdata, &currentPosition, &currentI0, &t, (fname+ext).c_str(), NULL);
ppFun->addFrame(lfdata, &currentPosition, &currentI0, &t, (fname).c_str(), NULL);
if ((GetCurrentPositionIndex()>=npos && positionFinished() && dataQueueSize()) || npos==0) {
@ -188,16 +201,27 @@ void postProcessing::doProcessing(double *lfdata, int delflag, string fname) {
pthread_mutex_unlock(&mp);
if(*correctionMask&(1<<WRITE_FILE)) {
cout << "writing to file?!?!?" << endl;
writeDataFile (fname+ext,np,ang, val, err,'f');
}
thisData=new detectorData(ang,val,err,getCurrentProgress(),(fname+ext).c_str(),np);
if((*correctionMask)&(1<<WRITE_FILE)) {
//cout << "write to file " << fname+ext << " " << np << " " << ang<< " " << val << " " << err << endl;
writeDataFile (fname+ext,np,val, err,ang,'f');
}
if (dataReady) {
thisData=new detectorData(ang,val,err,getCurrentProgress(),(fname+ext).c_str(),np);
dataReady(thisData, pCallbackArg);
delete thisData;
ang=NULL;
val=NULL;
err=NULL;
}
delete thisData;
if (ang)
delete [] ang;
if (val)
delete [] val;
if (err)
delete [] err;
}
}
@ -370,6 +394,7 @@ int postProcessing::dataQueueSize() {
}
int* postProcessing::popDataQueue() {
int *retval=NULL;
#ifdef VERBOSE
@ -448,13 +473,13 @@ void postProcessing::startThread(int delflag) {
#ifdef VERBOSE
cout << "chanspermod" << endl;
#endif
mM[im]=getMoveFlag(im);
// mM[im]=getMoveFlag(im);
#ifdef VERBOSE
cout << "moveflag" << endl;
#endif
totch+=chPM[im];
}
fillModuleMask(mM);
#ifdef VERBOSE
cout << "total channels is " << totch << endl;
#endif

18
slsDetectorSoftware/slsDetectorAnalysis/postProcessing.h
View File

@ -221,13 +221,16 @@ s
virtual int flatFieldCorrect(double*, double*, double*, double*)=0;
virtual int fillModuleMask(int *mM)=0;
virtual int getNMods()=0;
int GetCurrentPositionIndex(){ pthread_mutex_lock(&mp); int retval=getCurrentPositionIndex(); pthread_mutex_unlock(&mp); return retval;};
void IncrementPositionIndex(){ pthread_mutex_lock(&mp); incrementPositionIndex(); pthread_mutex_unlock(&mp);};
void IncrementFileIndex(){ pthread_mutex_lock(&mp); incrementFileIndex(); pthread_mutex_unlock(&mp); cout << "findex unlock" << endl;};
void IncrementFileIndex(){ pthread_mutex_lock(&mp); incrementFileIndex(); pthread_mutex_unlock(&mp); };
int GetFileIndex(){ pthread_mutex_lock(&mp); int i=*fileIndex; pthread_mutex_unlock(&mp); return i;};
void ResetPositionIndex(){pthread_mutex_lock(&mp); resetPositionIndex(); pthread_mutex_unlock(&mp);};
@ -324,6 +327,19 @@ s
postProcessingFuncs *ppFun;
detectorData *thisData;
double *ang;
double *val;
double *err;
};

33
slsDetectorSoftware/slsDetectorAnalysis/postProcessingFuncs.cpp
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@ -42,8 +42,9 @@ int postProcessingFuncs::finalizeDataset(double *ang, double *val, double *err,
for (int ip=0; ip<(*np); ip++) {
if (mp)
ang[ip]=mp[ip];
if (ang)
if (mp)
ang[ip]=mp[ip];
if (mv)
val[ip]=mv[ip]*totalI0;
@ -89,9 +90,11 @@ int postProcessingFuncs::addFrame(double *data, double *pos, double *I0, double
else
eout=0;
//ratecorrect
if (tDead) {
#ifdef VERBOSE
cout << "ppFuncs ratecorrect" << endl;
#endif
rateCorrect(vin, ein, vout, eout, tDead, *expTime);
vin=vout;
ein=eout;
@ -99,6 +102,9 @@ int postProcessingFuncs::addFrame(double *data, double *pos, double *I0, double
//ffcorrect
if (ffCoeff) {
#ifdef VERBOSE
cout << "ppFuncs ffcorrect" << endl;
#endif
if (ffErr)
e=ffErr[ich];
else
@ -109,23 +115,40 @@ int postProcessingFuncs::addFrame(double *data, double *pos, double *I0, double
//i0correct
if (i0>0) {
#ifdef VERBOSE
cout << "ppFuncs i0 norm" << endl;
#endif
vout/=i0;
eout/=i0;
}
if (badChannelMask)
if (badChannelMask) {
#ifdef VERBOSE
cout << "ppFuncs badchans" << endl;
#endif
if (badChannelMask[ich])
continue;
}
if (nBins) {
//angconv
#ifdef VERBOSE
cout << "ppFuncs angconv" << endl;
#endif
//check module mask?!?!?!?
p1=convertAngle(*pos,ich,chansPerMod,angConv,moduleMask,totalOffset,0,angDir);
#ifdef VERBOSE
cout << "ppFuncs merge" << endl;
#endif
addPointToMerging(p1,vout,eout,mp,mv,me,mm, binSize, nBins);
} else {
#ifdef VERBOSE
cout << "ppFuncs merge" << endl;
#endif
//mp[ich]=ich;
mv[ich]+=vout;
me[ich]+=eout*eout;
}