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Author	SHA1	Message	Date
hinger_v	13b9f288a0	Rework ROI mirroring to clarify intent: Mirror on an axis	2026-08-20 16:49:22 +02:00
mazzol_a	4970a92d50	updated clang-format commands (#352) ... - updated custom targets clang-format, check-format, clang-tidy - find: paths must precede expression: `\' (double \\ not properly escaped in bash)	2026-08-20 16:14:32 +02:00
hinger_v	57e035abc3	Format	2026-08-20 14:44:25 +02:00
hinger_v	cb76a948e4	Merge remote-tracking branch 'refs/remotes/origin/dev/strixels/remap_simple' into dev/strixels/remap_simple	2026-08-20 13:55:30 +02:00
hinger_v	605c28bc19	Fix names of format helpers and remove unused	2026-08-20 12:30:11 +02:00
Erik Fröjdh	fef57c13c9	added const overload for NDArray::view() (#351) ... - Added missing const T overload for NDArray::view() - Tests	2026-08-19 16:21:37 +02:00
Erik Fröjdh	af25aea684	Fixed bug in reading analog samples for <v8.0 (#349) ... Before v8.0 we should always try to read analog samples. This bug resulted in old Mönch03 data not being reordered. 1. Added test for master file parsing 2. Fixed code closing #348	2026-08-19 12:34:37 +02:00
mazzol_a	e96778909e	Merge branch 'main' into dev/strixels/remap_simple	2026-08-19 11:47:39 +02:00
Erik Fröjdh	aa39470686	Removed unused DynamicCluster (#346) ... - Removed unused DynamicCluster - Removed commented out references to ClusterFileV2	2026-08-14 11:11:43 +02:00
Erik Fröjdh	4f6b69fba6	Removing deprecated use of lmfit (#344) ... Removed the lmfit based fitting and the old API for calling functions closes #296	2026-08-14 10:31:07 +02:00
Erik Fröjdh	e26db97b5c	Prototype multi threaded file reader (#343) ... - Reading files from nfs shares tops out at ~1GB/s for single threaded reads. - MultiThreadedFileReader uses our File wrapper to read a generic file in parallel - Placed in aare::experimental to show that it's not production ready	2026-08-11 15:28:54 +02:00
hinger_v	4bfe7eceea	InclusiveROI comment	2026-07-24 11:47:25 +02:00
hinger_v	f3c79465d5	Clarify and document strixel_to_pixel_map more	2026-07-24 11:34:21 +02:00
hinger_v	561d76203d	Clarify and document strixel_to_pixel_map	2026-07-22 18:03:24 +02:00
hinger_v	13f8c9ea80	Document generators	2026-07-22 15:52:58 +02:00
hinger_v	98cdc6ba08	Refactoring and simplifications: ... - Adjust for reduced remap result struct - Add predefined SensorConfigs - Move combine_group_maps to implementation detail of RemapGenerate - Remove apply_rotation_shift and Rotation flip (have become superfluous)	2026-07-22 14:34:47 +02:00
hinger_v	9b5a15f2a4	Consistently add briefs	2026-07-21 16:13:15 +02:00
hinger_v	c5ccd44a4c	Refactoring suggestion for remap result (better doc)	2026-07-21 16:04:41 +02:00
hinger_v	857059cdaf	Fix duplicate include	2026-07-21 15:46:09 +02:00
hinger_v	81b91fb959	Refactoring suggestion for mapping result (reduced + doc)	2026-07-21 15:45:39 +02:00
hinger_v	9a63c9ac94	Refactoring suggestion for remap result (correct comments)	2026-07-21 15:22:25 +02:00
hinger_v	f09ede2646	Refactoring suggestion for mapping result	2026-07-21 15:00:36 +02:00
hinger_v	9344cea819	Improve documentation of structs in defs and rename SensorPlacement -> SensorModulePlacement	2026-07-17 15:51:16 +02:00
hinger_v	9bc4a4d6a9	Delete legacy configs	2026-07-17 14:23:21 +02:00
hinger_v	4b8317de69	Missed file from previous commit (move SensorPixelGeometry and rename structs in defs)	2026-07-17 14:17:48 +02:00
hinger_v	6b0598cd30	Move SensorPixelGeometry to SensorConfig and rename group-specific entities to reflect independence of sensor	2026-07-17 14:16:50 +02:00
hinger_v	67690aacf9	Fix only one SensorPlacement also in RemapGenerate.hpp	2026-07-17 11:36:23 +02:00
hinger_v	d3e337d061	Fix compiler warning -> ssize_t	2026-07-16 19:39:24 +02:00
hinger_v	1b05488173	Separate flat_index < 0 from >= input.size() and throw only at the latter	2026-07-16 19:30:02 +02:00
hinger_v	14bfc19b6a	Rework RemapAlgorithm.hpp according to comments ... - Add assert to flip - Only one SensorPlacement for strixel_to_pixel_maps - Pass order_map as NDView to ApplyRemap Additional: - Check output.shape() matches order_map.shape (correct buffer allocation) - Chash nrows and ncols - pass NDViews by value (copying is cheap and it makes the intent more clear that it only takes a snapshot of the arrays	2026-07-16 19:21:09 +02:00
hinger_v	60c4d77627	Rename: alignROIs -> rebaseROI	2026-07-16 12:22:26 +02:00
hinger_v	a6927310a5	SImplify and document according to comments	2026-07-16 12:15:01 +02:00
hinger_v	98385902df	Merge branch 'main' into dev/strixels/remap_simple	2026-07-16 11:05:30 +02:00
hinger_v	afd92ac457	Bugfix: Separate Rotation and Routing	2026-07-16 11:04:43 +02:00
mazzol_a	533ecb8a4a	removed patch for minuit2 CMakeLists.txt (#336) ... - patch no longer needed for minuit2 as CMakeLists.txt has been updated: https://github.com/GooFit/Minuit2/commit/46716e516e34a95e1f4effa95705a9e0c3425839	2026-07-16 10:39:06 +02:00
Erik Fröjdh	db67e870d9	readme 2026.7.2	2026-07-02 17:00:45 +02:00
Erik Fröjdh	7804e3a35b	bumped version	2026-07-02 16:51:44 +02:00
3 people	4aadb6f7f0	refactor: hide Minuit2 from aare's public API (#331) ... - Move Chi2.hpp from include/aare/ to src/ (private) - Pimpl on FitModel<Model>: MnUserParameters/MnStrategy behind opaque src/FitModelImpl.hpp, no Minuit2 includes in public headers - Move fit_pixel/fit_3d bodies to Fit.cpp with explicit instantiations for all 8 models; drop FCN template param from public API - CMake: aare::Minuit2 wrapped in $<BUILD_INTERFACE:...> (hidden from exported targets, same pattern as lmfit), MINUIT2_INSTALL OFF, Chi2.hpp removed from PUBLICHEADERS - Update python bindings and benchmark callsites accordingly --------- Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch> Co-authored-by: Alice <alice.mazzoleni@psi.ch>	2026-07-02 16:04:22 +02:00
mazzol_a	b4686e6b85	added moench05 defs (#333) ... - add moench05 chip/chiptestboard defs	2026-06-26 17:43:06 +02:00
maliakal_d	8c9f4ca763	cmake: treat warnings as errors (#330) ... - treating warnings as errors during github and gitea workflows	2026-06-16 12:32:28 +02:00
mazzol_a	982419149d	Merge branch 'main' into dev/treat_errors_as_warnings	2026-06-15 14:44:13 +02:00
mazzol_a	0a4c4f5ec1	change AxisType to float for pixelhistogram tests	2026-06-15 14:27:26 +02:00
mazzol_a	559c822a02	change AxisType to float for pixelhistogram tests	2026-06-15 14:22:24 +02:00
mazzol_a	b71fcb1d1a	fixed apple clang warning	2026-06-15 14:03:36 +02:00
mazzol_a	85833cebb3	fixed unsued warning in PedestalTrackingHistogram	2026-06-15 11:52:44 +02:00
Erik Fröjdh	b4b28fc9e0	len() and pedestal subtraction (#328) ... Collection of small improvements in usability: - NDView works for large arrays - Direct subtraction of Pedestal from np.array - len() support for python bindings of files	2026-06-15 11:38:06 +02:00
mazzol_a	ae8744358a	cmake format	2026-06-15 11:36:03 +02:00
mazzol_aandErik Fröjdh	ee7503082d	Dev/matterhorn decoder (#324) ... - reshape image directly in decoder such that first dimension is num counters - take into account chip artefact in decoder. --------- Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2026-06-11 15:04:20 +02:00
Erik Fröjdh	2041c7310a	Fixed usage of fmt::format and fmt::print for C++20 (#323) ... With C++20 `fmt::print(s)` expects a compile time format string and otherwise fails complaining about consteval. To get runtime formatting use `fmt::print(fmt::runtime(s))`	2026-06-11 08:01:03 +02:00
hinger_v	e70392aafe	Merge branch 'main' into dev/strixels/remap_simple	2026-06-10 13:33:46 +02:00