167 Commits

Author	SHA1	Message	Date
Jonathan Mulvey	df57cbef77	Added support for saving 21x21 clusters (only saving, nothing else yet)	2026-01-29 00:16:24 +01:00
Jonathan Mulvey	c1ad43e53d	Fresh branch with up-to-date changes from Main. Changes from fix/rounding have also been implemented here. This commit also includes the changes necessary so that the cluster finder can search for NxN clusters while saving MxM which greatly improves performance and the efficiency of pile-up rejection later down the line	2026-01-22 15:49:03 +01:00
AliceMazzoleni99	b77a576f72	Dev/automate tests using data (#267) ... - automatically run python tests - automatically run test using data files on local runner from gitea - fixed some of the workflows --------- Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2026-01-20 17:20:48 +01:00
siebsi	31f3a60cd3	added correct decoder for ADC-SAR-05-06-07-08 ASIC (#266) ... Adding function to correctly decode the ADC-SAR-05-06-07-08 Chip. Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2026-01-20 16:38:06 +01:00
Erik Fröjdh	7f3123d68f	Added parsing of exptime and period from master files (#256) ... - New aare:to_string/string_to similar to what we have in slsDetectorPackage - Added members period and exptime to RawMasterFile - Parsing exposure time and period for json and raw master file formats - Parsing of RawMasterFile from string stream to enable test without files Comments: - to_string is at the moment not a public header. Can make it later if needed. This gives us full freedom with the API - FileConfig should probably be deprecated need to look into it. Meanwhile removed python bindings and string conv	2025-12-18 17:04:12 +01:00
AliceMazzoleni99	fb95e518b4	Dev/interpolation documentation (#255) ... - added transform_eta_values for easier debugging more control for the user - updated Documentation	2025-12-16 13:06:28 +01:00
Erik Fröjdh	80a2b02345	Dev/decode my302 (#254) ... This PR adds support for decoding digital data from the my320 test chip. - Added BitOffset (strong type) - Expand 24 to 32 bit - Python bindings for decoding my302 - Improved docs	2025-12-09 18:27:02 +01:00
AliceMazzoleni99	e795310b16	fixed tests (#252) ... - fixed failed tests - removed import of pickle, scipy - still requires boost_histogram, pytest_check Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2025-11-28 11:28:13 +01:00
AliceMazzoleni99	6f7cb4ae30	Merge branch 'main' into dev/license	2025-11-21 14:52:54 +01:00
AliceMazzoleni99	267ca87ab0	Dev/rosenblatttransform (#241) ... - added rosenblatttransform - added 3x3 eta methods - interpolation can be used with various eta functions - added documentation for interpolation, eta calculation - exposed full eta struct in python - disable ClusterFinder for 2x2 clusters - factory function for ClusterVector --------- Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch> Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2025-11-21 14:48:46 +01:00
Erik Fröjdh	200ae91622	also hpp	2025-11-21 10:14:14 +01:00
Erik Fröjdh	53aed8d8c6	added license	2025-11-20 09:01:28 +01:00
AliceMazzoleni99	8989d2eb4a	Merge branch 'main' into dev/expose_sum_2x2_to_python	2025-10-27 19:47:09 +01:00
Erik Fröjdh	ac83eeff9b	added tell and better error checking to cluster file (#239) ... - Check feof and ferror when reading frames - added tell member function to ClusterFile	2025-10-27 15:46:31 +01:00
Alice	df7b9be5a5	added docstrings wrap struct into tuple	2025-10-23 19:16:33 +02:00
Alice	dbffea15c0	fix: included deleted file	2025-10-23 17:50:17 +02:00
Alice	73e8fd31c9	vector class no longer needed	2025-10-23 17:36:29 +02:00
Alice	01fa61cf47	index now returns enum type	2025-10-23 17:34:54 +02:00
Alice	790dd63ba3	make max_sum_2x2 properly accessible from python	2025-10-23 15:00:52 +02:00
Alice	516ef88d10	adresses SonarQube comments	2025-10-08 18:19:17 +02:00
Alice	5329be816e	removed times 2 in calculated photon center distance	2025-10-08 17:01:38 +02:00
Alice	72a2604ca5	test for interpolation with simulated normal energy distribution	2025-10-08 16:35:52 +02:00
Alice	c78a73ebaf	changed default CoordType in Cluster constructor in python bindings to uint16_t	2025-10-07 16:49:06 +02:00
Alice	474c35cc6b	Merge branch 'main' into dev/reduce	2025-09-08 15:39:27 +02:00
Alice	12114e7275	added documentation	2025-09-01 15:29:58 +02:00
Alice	7926993bb2	reduction tests for python	2025-09-01 14:15:08 +02:00
Alice	d908ad3636	removed option to give clustersize	2025-08-22 15:25:15 +02:00
Alice	437f7cec89	induce the cluster size of ClusterCollector from ClusterFinderMT - handle backwards compatibility	2025-08-22 10:08:38 +02:00
Alice	b59277c4bf	3x3 reduction for general cluszter sizes	2025-08-19 12:37:55 +02:00
Alice	cb163c79b4	reduction to 2x2 clusters for general clusters	2025-08-18 18:23:15 +02:00
Alice	1347158235	templated calculate_pedestal with boolean template argument only_gain0, added drop_dimension to NDArray and reference pointer to data	2025-07-24 15:40:05 +02:00
Erik Fröjdh	cb439efb48	added tests	2025-07-23 11:34:47 +02:00
Erik Fröjdh	5de402f91b	added docs	2025-07-23 11:05:44 +02:00
froejdh_e	9a7713e98a	added g0 calibration, pedestal and pixel counting	2025-07-22 16:42:09 +02:00
Erik Fröjdh	9a3694b980	Merge branch 'main' into dev/reduce	2025-07-18 10:19:42 +02:00
Erik Fröjdh	abae2674a9	Apply calibration to Jungfrau raw data (#216) ... - Added function to read calibration file - Multi threaded pedestal subtraction and application of the calibration	2025-07-18 10:19:14 +02:00
froejdh_e	5a9c3b717e	naive implementation of 3x3 and 5x5 reduction	2025-06-27 16:36:21 +02:00
Erik Fröjdh	6ec8fbee72	migrated tags for tests and added missing raw files (#206) ... - No changes or evaluation of existing tests - Tags for including tests that require data is changed to **[.with-data]** and **--with-data** for C++ and python respectively - Minor update to docs - Added missing files to the test data repo	2025-06-26 17:11:20 +02:00
Alice	ff7312f45d	replaced fmt with LOG	2025-06-24 16:24:25 +02:00
Alice	c92be4bca2	added eiger quad test	2025-06-24 11:29:25 +02:00
Erik Fröjdh	64438c8803	Merge branch 'main' into dev/fix/rawfilereader_with_roi	2025-06-23 08:21:39 +02:00
Alice	9f8eee5d08	fixed python bindings - only read headers of modules that are in the roi	2025-06-16 11:07:00 +02:00
Alice	b13f864b2b	need n_modules	2025-06-13 17:01:13 +02:00
Alice	05828baa54	removed n_modules from python bindings	2025-06-13 16:38:46 +02:00
Erik Fröjdh	11fa95b23c	Improved documentation for ClusterFile on the python side (#201) ... - Fixed CI job not doing python docs - added more docs on cluster file - fixed generating docs on cluster vector	2025-06-13 10:41:39 +02:00
Erik Fröjdh	4976ec1651	added back chunk_size in python (#199) ... When refactoring the dispatch of the python binding for ClusterFile I forgot chunk_size. Adding it back in. Excluded from release notes since the bug was introduced after the last release and now fixed before the next release. 1. added back chunk_size 2. removed a few commented out lines closes #197	2025-06-12 09:32:42 +02:00
Alice	19ecc82fff	solved merge conflict	2025-06-10 17:01:40 +02:00
Alice	f9751902a2	formatted main branch	2025-06-10 16:09:06 +02:00
Alice	923f7d22b8	Merge branch 'main' into dev/fix/rawfilereader_with_roi	2025-06-10 15:59:52 +02:00
Alice	6438a4bef1	updated python bindings	2025-06-10 12:00:07 +02:00