 Abe Levitan
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dd30f58d2d
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Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
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2024-02-11 17:32:41 -05:00 |
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Abe Levitan
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44a6fac37a
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Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format
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2024-02-11 10:29:07 -05:00 |
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 levita_a
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a9e0157707
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Get tests to past and removeopt_for_fft
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2023-12-01 15:58:18 +01:00 |
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Abe Levitan
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e8023703a0
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Start documenting the models, and change the default FOV on fancy_ptycho reconstruction inspections
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2023-10-17 15:38:48 +02:00 |
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Abe Levitan
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a260168d9d
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Honestly I don't know, I must have forgotten to commit something
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2023-01-10 16:30:35 -08:00 |
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abe
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e13b519e22
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some horrible state but I need to stop developing on perlmutter
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2022-10-17 16:32:59 -07:00 |
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abe
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cb954a6067
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Fix the annoying warning printing from interactions and get a minimum usable script going for simpleptycho and distributeddataparallel
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2022-10-16 17:06:44 -07:00 |
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Abe Levitan
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1a34aaef60
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Start making changes to enable multi-GPU, beginning with simple_ptycho
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2022-10-16 12:01:55 -07:00 |
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Abe Levitan
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883ac0175a
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Changed module name no lowercase because that's really how it should be
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2022-06-08 12:52:33 -07:00 |
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Abe Levitan
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53cd966c33
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Update the RPI model and clean up the examples section
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2021-07-06 13:58:00 -04:00 |
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Abe Levitan
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8ddcc7683f
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Start cleaning up the repo and tidying up the example scripts
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2021-06-28 11:14:41 -04:00 |
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Abe Levitan
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76e6d5efae
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get tests working
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2021-06-21 16:55:34 -04:00 |
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Abe Levitan
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a3765e9097
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remove all reference to cmath, get code and tests to the point where they run at least.
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2021-06-17 16:47:24 -04:00 |
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Abe Levitan
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188a685503
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Fix a bug in multislice where it doesn't work when prevent_alias is set to True
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2021-06-02 14:48:57 -04:00 |
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Abe Levitan
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2854a872ee
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Make a program to visualize the shot to shot fluctuations when using the unified mode model
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2021-04-08 16:28:24 -04:00 |
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Abe Levitan
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f6f8084978
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Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models
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2021-03-11 17:01:55 -05:00 |
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Abe Levitan
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d664bf351b
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Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models
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2021-02-04 18:55:55 -05:00 |
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Abe Levitan
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3acd1ece3c
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Make it so it doesn't require a crazy amount of memory
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2021-01-26 22:46:15 -05:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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936b203aac
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Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
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2020-12-28 22:09:20 -05:00 |
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Abe Levitan
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6b735a431f
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Clean up namespaces and also add a test of RPI with incoherent probes
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2020-12-28 21:32:18 -05:00 |
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Abe Levitan
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4be2af8609
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Finally finally finally add an RPI model. Makes it soooo much easier...
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2020-12-22 14:12:51 -05:00 |
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Abe Levitan
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aea0ff9bf8
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Write a multislice and s_matrix ptychography program
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2020-10-28 13:55:04 -04:00 |
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Abe Levitan
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19f61ab946
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Add option for propagation vector separate from offset vector
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2020-04-29 17:55:00 -04:00 |
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Abe Levitan
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a5b2337293
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Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
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2020-04-29 13:50:13 -04:00 |
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Abe Levitan
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8d589eef86
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2020-01-25 19:01:11 -05:00 |
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Abe Levitan
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a1cca0dcea
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misc updates
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2020-01-25 19:01:03 -05:00 |
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Abraham Levitan
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f78a39daf5
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add the test for simple_ptycho_model'
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2019-10-07 15:44:17 -04:00 |
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Abe Levitan
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120e23ef15
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Write the model and dataset tutorials, update the dependencies, and various small bug fixes
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2019-10-04 16:53:22 -04:00 |
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Abe Levitan
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f58f3cc2c5
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misc small changes
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2019-10-02 13:27:32 -04:00 |
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Abe Levitan
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40998908f1
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refactor datasets, wrote more docs, added one more test dataset
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2019-09-09 14:16:42 -04:00 |
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Abe Levitan
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99d02f95cf
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Finish fleshing out the examples
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2019-09-04 18:23:34 -04:00 |
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Abe Levitan
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e80bf05f25
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Further improve docs layout and add unfinished ptycho models to repo
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2019-09-04 16:27:55 -04:00 |
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Abe Levitan
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de186592cb
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Update the docstrings on all the tools files and start laying out the docs for real
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2019-09-03 18:49:45 -04:00 |
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Abe Levitan
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1e3a98c599
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Add and build tests for a Fourier Ring Correlation method
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2019-08-17 10:39:35 -04:00 |
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Abe Levitan
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d2c07bf1ac
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Add a tool to look at raw data
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2019-08-15 12:16:43 -04:00 |
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Abe Levitan
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f769806e68
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Lots of small changes
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2019-08-15 11:14:20 -04:00 |
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Abe Levitan
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fe1f4db0c6
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Consistently get Bragg/specular geometry implemented across both models/datasets and dataloaders
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2019-07-01 15:02:14 -04:00 |
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Abe Levitan
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6b50e41614
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Add some sensible examples
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2019-06-28 16:01:53 -04:00 |
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Abe Levitan
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a2a07055c4
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Add sim-to-dataset capability
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2019-06-27 17:26:36 -04:00 |
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Abe Levitan
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f769f9e7ab
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Start moving the example code to datasets which can fit on the git server
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2019-06-26 17:47:09 -04:00 |
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Abe Levitan
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c246a5ed96
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Added a diffraction pattern browser
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2019-06-26 17:26:25 -04:00 |
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Abe Levitan
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c437f95a8e
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Loveplotting!
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2019-06-26 13:25:54 -04:00 |
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Maddie Cain
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e7c0e4771c
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generate diffraction data with errors added for debugging on gpu
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2019-05-14 01:38:15 -04:00 |
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Maddie Cain
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4896d7354a
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fixed ePIE bug and shortened inspect function
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2019-05-12 22:58:37 -04:00 |
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Abe Levitan
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26de79ca92
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Include ability to read background from a .cxi file and include it in SHARP-style initialization
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2019-04-25 16:06:59 -04:00 |
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Abe Levitan
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d0a56c2d99
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Adding catch-all plotting tools and saving tools to models
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2019-04-25 15:46:36 -04:00 |
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Maddie Cain
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84ac2cc058
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added ePIE
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2019-04-24 12:26:32 -04:00 |
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Maddie Cain
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6a670a82af
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untested ptychography work
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2019-04-24 09:06:50 -04:00 |
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Abe Levitan
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bf8dbe086a
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Add the frantic work over the past few weeks, next challenge is to organize and test it
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2019-04-23 14:50:16 -04:00 |
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