 Abe Levitan
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dd30f58d2d
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Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
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2024-02-11 17:32:41 -05:00 |
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Abe Levitan
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44a6fac37a
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Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format
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2024-02-11 10:29:07 -05:00 |
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Abraham Levitan
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e48970f7a9
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Add an option for probe fourier crop to Bragg 2D Ptycho
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2024-02-10 13:42:22 -05:00 |
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 levita_a
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d0a0d12521
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Add a normalize reconstruction set function
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2024-01-04 16:50:10 +01:00 |
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levita_a
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7c269cff47
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remove an errant print statement
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2023-12-04 15:35:05 +01:00 |
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levita_a
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f3b6ac9056
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fix the numerical stability issue in the angular spectrum propagator code, but remove the ability to choose whether or not to include an explicit z dependence
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2023-12-04 15:29:40 +01:00 |
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levita_a
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a9e0157707
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Get tests to past and removeopt_for_fft
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2023-12-01 15:58:18 +01:00 |
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Abe Levitan
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8ef3411604
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Whoops I forgot some files in the last commit
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2023-11-08 13:09:54 +01:00 |
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Abe Levitan
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1f44fdd57c
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Some misc work toward the no analyzer jones matrix model (polarization swept)
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2023-11-08 13:09:10 +01:00 |
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Abe Levitan
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e8023703a0
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Start documenting the models, and change the default FOV on fancy_ptycho reconstruction inspections
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2023-10-17 15:38:48 +02:00 |
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Abe Levitan
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88aedcc448
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Update the poisson loss function to use xlogy and start work on the poisson + detector loss function
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2023-08-15 10:47:50 -07:00 |
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Abe Levitan
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a5699ed508
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fix the oversampling + finite pixel issue
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2023-03-15 12:05:54 -07:00 |
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Abe Levitan
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10cffb62c3
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Add wavelength info to the data saved by fancy_ptycho
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2023-02-16 17:26:56 -08:00 |
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Abe Levitan
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9f341fb4bd
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update the requirements files and fix a bug that prevented install when not in developer mode
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2023-01-13 11:59:07 -08:00 |
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Abe Levitan
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a260168d9d
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Honestly I don't know, I must have forgotten to commit something
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2023-01-10 16:30:35 -08:00 |
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abe
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e13b519e22
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some horrible state but I need to stop developing on perlmutter
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2022-10-17 16:32:59 -07:00 |
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abe
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cb954a6067
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Fix the annoying warning printing from interactions and get a minimum usable script going for simpleptycho and distributeddataparallel
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2022-10-16 17:06:44 -07:00 |
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Abe Levitan
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1a34aaef60
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Start making changes to enable multi-GPU, beginning with simple_ptycho
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2022-10-16 12:01:55 -07:00 |
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Abe Levitan
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978c9d3206
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Add an option to simulate finite pixel sizes
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2022-09-29 14:14:43 -07:00 |
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Abe Levitan
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036fa8ea2c
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remove dependency on fftpack completely
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2022-08-19 10:02:11 -07:00 |
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Abe Levitan
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b8b508ce2c
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remove a dependency on scipy fftpack
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2022-08-19 09:30:41 -07:00 |
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Abe Levitan
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a37b30f06d
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And update the readme
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2022-06-08 13:33:17 -07:00 |
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Abe Levitan
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08eb1ad2ef
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And update the readme
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2022-06-08 13:32:39 -07:00 |
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Abe Levitan
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858d8f3b2a
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Make edits to the docs to handle the lowercaseness of cdtools now
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2022-06-08 13:30:49 -07:00 |
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Abe Levitan
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672096085b
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renamed to lowercase
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2022-06-08 13:13:13 -07:00 |
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Abe Levitan
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b8500bd5a8
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renaming
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2022-06-08 13:12:50 -07:00 |
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Abe Levitan
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883ac0175a
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Changed module name no lowercase because that's really how it should be
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2022-06-08 12:52:33 -07:00 |
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Abe Levitan
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442fa2c71f
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move to a src directory layout
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2022-06-08 12:09:03 -07:00 |
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Abe Levitan
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c3fef28314
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Clean some stuff that should have been in the polarization channel, get ready for pytorch's move to xy-style meshgrid
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2022-06-08 11:11:46 -07:00 |
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Abe Levitan
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54ddb078e1
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make some changes relating to oversampling in FancyPtycho
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2022-06-08 11:01:16 -07:00 |
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Abe Levitan
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101e969eda
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Fix the failing tests
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2022-04-18 17:18:20 -07:00 |
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Abe Levitan
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f3cee949e0
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Merging a whole buncha work back into master
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2022-04-18 15:51:45 -07:00 |
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Abe Levitan
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20a1479859
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Updating LBFGS line search type
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2022-04-07 15:26:33 -07:00 |
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Abe Levitan
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ddcc5bbab4
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Fix ptycho_2d_dataset
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2022-03-08 10:01:26 -05:00 |
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Abe Levitan
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571fe19ca3
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fixing compression
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2022-02-25 12:40:23 -05:00 |
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Abe Levitan
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ab8c959652
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fixing compression
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2022-02-25 12:25:01 -05:00 |
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Abe Levitan
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26b2ecd812
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add compression to data saving tools
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2022-02-25 12:16:41 -05:00 |
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Abe Levitan
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c1663fa964
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Add some tools for datasets to store input intensity measurements
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2022-02-22 20:36:50 -05:00 |
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Abe Levitan
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0d91272766
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Create a base version of the models
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2022-02-15 15:16:07 -05:00 |
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Abe Levitan
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c66de47f95
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Misc updates
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2022-02-01 17:04:46 -05:00 |
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Abe Levitan
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2c8f60a11c
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Add a tool to account for the probe position movement on the detector to fancy_ptycho
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2021-11-12 15:41:17 -05:00 |
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Abe Levitan
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6d4cf4067c
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Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization
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2021-10-26 20:42:23 -04:00 |
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Abe Levitan
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1a214b76e4
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Small changes to fix stuff
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2021-10-26 20:40:48 -04:00 |
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Abe Levitan
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1b5ef2271c
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Buncha stuff, sorry I wasn't pushing
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2021-10-26 13:11:11 -04:00 |
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Anastasiia Kutakh
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190808f90c
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.
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2021-08-27 12:41:34 -04:00 |
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Anastasiia Kutakh
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950fe9bdca
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Merge branch 'polarization' of https://github.mit.edu/Scattering/CDTools into polarization
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2021-08-27 12:35:29 -04:00 |
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Anastasiia Kutakh
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d48624bf23
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.
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2021-08-27 12:35:06 -04:00 |
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Abe Levitan
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24f213d03c
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Merge with Anastasia's changes
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2021-08-27 11:47:05 -04:00 |
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Abe Levitan
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37a97a9618
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Fix the input polarizer issue
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2021-08-27 11:46:14 -04:00 |
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Anastasiia Kutakh
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d7697433ba
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.
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2021-08-27 05:16:48 -04:00 |
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