 levita_a
|
b3b19554d0
|
Add a phase only constraint to RPI and fancy_ptycho, misc small changes
|
2024-08-30 11:29:51 +02:00 |
|
|
levita_a
|
35f140d348
|
Fully replace orthogonalize_probes and update most models
|
2024-07-25 17:35:48 +02:00 |
|
|
levita_a
|
943dde13e6
|
Fix a remaining bug in orthogonalize_probes and also fix some lingering issues with the liveplotting for unified mode fancy ptycho
|
2024-07-25 16:32:10 +02:00 |
|
|
levita_a
|
5141320c6f
|
rewrite the probe orthogonalization for fancy_ptycho, and introduce a new probe orthogonalization tool in analysis. Also, update some tracking plots in fancy_ptycho
|
2024-07-25 15:46:53 +02:00 |
|
|
levita_a
|
a02a0466ae
|
fix a stupid bug I introduced at the last minute in the last commit
|
2024-07-02 10:58:17 +02:00 |
|
|
levita_a
|
59d103f6d6
|
update RPI to work with the latest data saving method, change dependence to latest pytorch for LBFGS to work on complex leaf tensors, and fix an issue with the test for the FRCs
|
2024-07-01 17:16:07 +02:00 |
|
|
levita_a
|
ee0d483f26
|
excise some old code from the RPI model that was making it fail, re: the old way of cropping out a detector slice
|
2024-06-26 11:09:43 +02:00 |
|
|
levita_a
|
29d14c9537
|
Get a basic version of checkpointing working
|
2024-04-18 14:22:14 +02:00 |
|
|
levita_a
|
edc94ec09b
|
Introducing new multislice model
|
2024-04-18 09:28:03 +02:00 |
|
|
levita_a
|
7b2509cfe1
|
remove useless old examples, and update the examples and docs to be useful for the current version
|
2024-02-26 17:56:19 +01:00 |
|
|
levita_a
|
46b00807c8
|
Fix a bug that I introduced in fancy_ptycho's oversampling, and also update some example scripts
|
2024-02-26 13:44:46 +01:00 |
|
|
levita_a
|
d7c7e8f396
|
start getting the docs back up to date
|
2024-02-23 16:54:48 +01:00 |
|
|
levita_a
|
2e6db5517d
|
get the projected views for bragg_2d_Ptycho working
|
2024-02-22 15:57:35 +01:00 |
|
|
levita_a
|
30f9b142b6
|
Fix up bragg_2d_ptycho a bit and add model.save_on_exception
|
2024-02-22 14:41:07 +01:00 |
|
 Abe Levitan
|
5925ee74ab
|
Checked and fixed the tests, got them all running
|
2024-02-12 14:55:26 -05:00 |
|
|
Abe Levitan
|
1502d567bf
|
honestly, not sure
|
2024-02-12 09:49:26 -05:00 |
|
|
Abe Levitan
|
dd30f58d2d
|
Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
|
2024-02-11 17:32:41 -05:00 |
|
|
Abe Levitan
|
44a6fac37a
|
Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format
|
2024-02-11 10:29:07 -05:00 |
|
|
Abraham Levitan
|
e48970f7a9
|
Add an option for probe fourier crop to Bragg 2D Ptycho
|
2024-02-10 13:42:22 -05:00 |
|
|
levita_a
|
d0a0d12521
|
Add a normalize reconstruction set function
|
2024-01-04 16:50:10 +01:00 |
|
|
levita_a
|
7c269cff47
|
remove an errant print statement
|
2023-12-04 15:35:05 +01:00 |
|
|
levita_a
|
f3b6ac9056
|
fix the numerical stability issue in the angular spectrum propagator code, but remove the ability to choose whether or not to include an explicit z dependence
|
2023-12-04 15:29:40 +01:00 |
|
|
levita_a
|
a9e0157707
|
Get tests to past and removeopt_for_fft
|
2023-12-01 15:58:18 +01:00 |
|
|
Abe Levitan
|
8ef3411604
|
Whoops I forgot some files in the last commit
|
2023-11-08 13:09:54 +01:00 |
|
|
Abe Levitan
|
1f44fdd57c
|
Some misc work toward the no analyzer jones matrix model (polarization swept)
|
2023-11-08 13:09:10 +01:00 |
|
|
Abe Levitan
|
e8023703a0
|
Start documenting the models, and change the default FOV on fancy_ptycho reconstruction inspections
|
2023-10-17 15:38:48 +02:00 |
|
|
Abe Levitan
|
88aedcc448
|
Update the poisson loss function to use xlogy and start work on the poisson + detector loss function
|
2023-08-15 10:47:50 -07:00 |
|
|
Abe Levitan
|
a5699ed508
|
fix the oversampling + finite pixel issue
|
2023-03-15 12:05:54 -07:00 |
|
|
Abe Levitan
|
10cffb62c3
|
Add wavelength info to the data saved by fancy_ptycho
|
2023-02-16 17:26:56 -08:00 |
|
|
Abe Levitan
|
9f341fb4bd
|
update the requirements files and fix a bug that prevented install when not in developer mode
|
2023-01-13 11:59:07 -08:00 |
|
|
Abe Levitan
|
a260168d9d
|
Honestly I don't know, I must have forgotten to commit something
|
2023-01-10 16:30:35 -08:00 |
|
|
abe
|
e13b519e22
|
some horrible state but I need to stop developing on perlmutter
|
2022-10-17 16:32:59 -07:00 |
|
|
abe
|
cb954a6067
|
Fix the annoying warning printing from interactions and get a minimum usable script going for simpleptycho and distributeddataparallel
|
2022-10-16 17:06:44 -07:00 |
|
|
Abe Levitan
|
1a34aaef60
|
Start making changes to enable multi-GPU, beginning with simple_ptycho
|
2022-10-16 12:01:55 -07:00 |
|
|
Abe Levitan
|
978c9d3206
|
Add an option to simulate finite pixel sizes
|
2022-09-29 14:14:43 -07:00 |
|
|
Abe Levitan
|
036fa8ea2c
|
remove dependency on fftpack completely
|
2022-08-19 10:02:11 -07:00 |
|
|
Abe Levitan
|
b8b508ce2c
|
remove a dependency on scipy fftpack
|
2022-08-19 09:30:41 -07:00 |
|
|
Abe Levitan
|
a37b30f06d
|
And update the readme
|
2022-06-08 13:33:17 -07:00 |
|
|
Abe Levitan
|
08eb1ad2ef
|
And update the readme
|
2022-06-08 13:32:39 -07:00 |
|
|
Abe Levitan
|
858d8f3b2a
|
Make edits to the docs to handle the lowercaseness of cdtools now
|
2022-06-08 13:30:49 -07:00 |
|
|
Abe Levitan
|
672096085b
|
renamed to lowercase
|
2022-06-08 13:13:13 -07:00 |
|
|
Abe Levitan
|
b8500bd5a8
|
renaming
|
2022-06-08 13:12:50 -07:00 |
|
|
Abe Levitan
|
883ac0175a
|
Changed module name no lowercase because that's really how it should be
|
2022-06-08 12:52:33 -07:00 |
|
|
Abe Levitan
|
442fa2c71f
|
move to a src directory layout
|
2022-06-08 12:09:03 -07:00 |
|
|
Abe Levitan
|
c3fef28314
|
Clean some stuff that should have been in the polarization channel, get ready for pytorch's move to xy-style meshgrid
|
2022-06-08 11:11:46 -07:00 |
|
|
Abe Levitan
|
54ddb078e1
|
make some changes relating to oversampling in FancyPtycho
|
2022-06-08 11:01:16 -07:00 |
|
|
Abe Levitan
|
101e969eda
|
Fix the failing tests
|
2022-04-18 17:18:20 -07:00 |
|
|
Abe Levitan
|
f3cee949e0
|
Merging a whole buncha work back into master
|
2022-04-18 15:51:45 -07:00 |
|
|
Abe Levitan
|
20a1479859
|
Updating LBFGS line search type
|
2022-04-07 15:26:33 -07:00 |
|
|
Abe Levitan
|
ddcc5bbab4
|
Fix ptycho_2d_dataset
|
2022-03-08 10:01:26 -05:00 |
|