Abe Levitan
a536e3bdb4
Maybe last time it didn't actually commit?
2021-01-25 13:38:38 -05:00
Abe Levitan
936b203aac
Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
2020-12-28 22:09:20 -05:00
Abe Levitan
32a8a8179d
Fix an issue with the test for the poisson NLL function
2020-12-28 21:45:01 -05:00
Abe Levitan
6b735a431f
Clean up namespaces and also add a test of RPI with incoherent probes
2020-12-28 21:32:18 -05:00
Abe Levitan
4be2af8609
Finally finally finally add an RPI model. Makes it soooo much easier...
2020-12-22 14:12:51 -05:00
Abe Levitan
75011eaccf
Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
2020-12-21 12:22:04 -05:00
Abe Levitan
38345da454
Update S matrix ptychography and also update the S matrix interaction function to use a more interpretable definition of the S matrix
2020-10-30 14:52:17 -04:00
Abe Levitan
aea0ff9bf8
Write a multislice and s_matrix ptychography program
2020-10-28 13:55:04 -04:00
Abe Levitan
0d484c0ac3
Fix sign error in generalized near field and associated test
2020-05-07 12:13:36 -04:00
Abe Levitan
31cc45da70
One more try to fix the off axis near field propagation
2020-05-04 16:53:50 -04:00
Abe Levitan
9771634551
Implement test for separate propagation and offset vectors
2020-04-29 20:11:03 -04:00
Abe Levitan
39cb345ccb
update docs
2020-04-29 17:56:48 -04:00
Abe Levitan
19f61ab946
Add option for propagation vector separate from offset vector
2020-04-29 17:55:00 -04:00
Abe Levitan
a5b2337293
Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
2020-04-29 13:50:13 -04:00
Abe Levitan
d586ed914e
Debug and test the off-axis propagation code
2020-04-24 14:16:44 -04:00
Abe Levitan
071eebd37b
Finish first pass of off-axis propagation, still needs to be tested off-axis
2020-04-23 20:37:13 -04:00
Abe Levitan
ad1a2e77b7
Update the exit_wave_geometry to handle paralellogram detectors
2020-04-23 17:39:16 -04:00
Abe Levitan
0dc2145ee0
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2020-04-23 14:32:29 -04:00
Abe Levitan
fbbecbd04c
First work on the off-axis propagator
2020-04-23 14:32:19 -04:00
Abraham Levitan
59f6d58ea6
Fix typo in tutorial
2020-04-07 10:08:27 -04:00
Abe Levitan
d8486306f7
Fix a bug with oversampling in the measurement functions
2020-02-11 15:20:55 -05:00
Abe Levitan
5cac96ff24
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2020-02-11 15:00:48 -05:00
Abe Levitan
7cbc3f2c53
Add a TITAN STEM converter and add units to the inspect function for fancy_ptycho
2020-02-11 15:00:42 -05:00
David Rower
8d89a86445
Fixing strings to avoid invalid escape sequence warning
2020-02-03 12:00:56 -05:00
Abe Levitan
8d589eef86
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2020-01-25 19:01:11 -05:00
Abe Levitan
a1cca0dcea
misc updates
2020-01-25 19:01:03 -05:00
David Rower
7a243842b9
Fixing wrong theta convention in converter; fixing simple_ptycho bug in dictionary syntax
2020-01-23 17:20:25 -05:00
David Rower
d659f6cca1
Taking unecessary printing out of conversion function
2020-01-23 16:35:29 -05:00
David Rower
7f93bdcfd3
Putting start_time in right format
2020-01-23 16:13:49 -05:00
David Rower
486f58a86e
Fixed special case in get_entry_info function, adding metadata to sample in converteR
2020-01-23 11:53:07 -05:00
David Rower
2ad4a2a00c
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2020-01-23 10:54:17 -05:00
David Rower
d4f9d5074c
First data converter!
2020-01-23 10:54:03 -05:00
Abraham Levitan
abdd0d6e1e
Update docs so that they can produce a latex/pdf version as well
2019-12-16 12:40:41 -05:00
David Rower
384ced5b00
Using $\mu instead of um for micrometers
2019-12-11 16:19:45 -05:00
David Rower
3cf44cff9f
using greek \mu instead of u for axis labels ;)
2019-12-09 19:14:08 -05:00
David Rower
51eae81ee2
Fixed logical bug in get_detector_geometry, enforcing PEP 257 docstring convention of using periods
2019-12-09 13:50:36 -05:00
David Rower
b5f78b47c7
add_detector now flexible for both CXI and CDTools basis conventions
2019-12-09 13:37:11 -05:00
David Rower
0cf106e769
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2019-12-03 15:32:22 -05:00
David Rower
d330e1b84e
Only adjusting colorbar when array is not a constant array (for consistency between shots), and added right/left keys for moving between shots
2019-12-03 15:32:16 -05:00
Kiara Carloni
0b122b0aca
Add files via upload
...
debugging_mod contains the various functions used to interface with the debugging data, while vid_read has examples of how to use them. I'm still in the process of trying to fix the g2 correlation function.
2019-10-21 21:38:33 +00:00
David Rower
256142e2f6
Fixing typo in analysis function documentation
2019-10-10 11:53:12 -04:00
Abraham Levitan
f78a39daf5
add the test for simple_ptycho_model'
2019-10-07 15:44:17 -04:00
Abe Levitan
e71c266fe4
Update the ptycho dataset with the new, more sensible, approach
2019-10-05 09:30:26 -04:00
Abe Levitan
e987d40df8
Remove last of t.tensor usage from dataset loading
2019-10-04 17:00:43 -04:00
Abe Levitan
120e23ef15
Write the model and dataset tutorials, update the dependencies, and various small bug fixes
2019-10-04 16:53:22 -04:00
Abe Levitan
bc7caebdd9
Fix the damn dataset.inspect thing
2019-10-03 17:49:10 -04:00
David Rower
8197eed50e
Fixed merging conflict - log scale in ptycho_2d_dataset.py
2019-10-03 15:25:27 -04:00
David Rower
61f8bf733e
Fixed a few bugs, 1) Title of relative displacement plot no longer dissapears, 2) slider now updates on click event, also added titles for colorbars.
2019-10-03 15:22:53 -04:00
Abe Levitan
69be77cc09
Update installation instructions for simplicity and also fix the tests to reflect new usage
2019-10-02 15:56:48 -04:00
Abe Levitan
918cade834
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2019-10-02 13:27:41 -04:00
Abe Levitan