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Only adjusting colorbar when array is not a constant array (for consistency between shots), and added right/left keys for moving between shots
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@@ -84,7 +84,7 @@ class Ptycho2DDataset(CDataset):
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getting data as GPU tensors.
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It loads data in the format (inputs, output)
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The inputs for a 2D ptychogaphy data set are:
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1) The indices of the patterns to use
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@@ -146,7 +146,7 @@ class Ptycho2DDataset(CDataset):
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dataset = CDataset.from_cxi(cxi_file)
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# Mutate the class to this subclass (BasicPtychoDataset)
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dataset.__class__ = cls
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# Load the data that is only relevant for this class
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patterns, axes = cdtdata.get_data(cxi_file)
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translations = cdtdata.get_ptycho_translations(cxi_file)
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@@ -159,7 +159,7 @@ class Ptycho2DDataset(CDataset):
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dataset.mask = t.ones(dataset.patterns.shape[-2:]).to(dtype=t.bool)
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return dataset
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def to_cxi(self, cxi_file):
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"""Saves out a Ptycho2DDataset as a .cxi file
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@@ -197,18 +197,18 @@ class Ptycho2DDataset(CDataset):
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can display a base-10 log plot of the detector readout at each
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position.
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"""
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# We start by making the figure and axes
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fig, axes = plt.subplots(1,2,figsize=(8,5.3))
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fig.tight_layout(rect=[0.04, 0.09, 0.98, 0.96])
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axslider = plt.axes([0.15,0.06,0.75,0.03])
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#
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# Then we define some helper functions for getting the right data
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# that are used both in the initial setup and the updates
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#
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def get_data(idx):
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inputs, output = self[idx]
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meas_data = output.detach().cpu().numpy()
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@@ -216,16 +216,16 @@ class Ptycho2DDataset(CDataset):
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mask = self.mask.detach().cpu().numpy()
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else:
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mask = 1
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return mask, meas_data
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def calculate_sizes(idx):
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bbox = axes[0].get_window_extent().transformed(fig.dpi_scale_trans.inverted())
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s0 = bbox.width * bbox.height / translations.shape[0] * 72**2 #72 is points per inch
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s0 /= 4 # A rough value to make the size work out
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s = np.ones(len(self)) * s0
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s[idx] *= 4
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return s
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@@ -237,11 +237,13 @@ class Ptycho2DDataset(CDataset):
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if hasattr(im, 'norecurse') and im.norecurse:
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im.norecurse=False
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return
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im.norecurse=True
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# This is needed to update the colorbar
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im.set_clim(vmin=np.min(im.get_array()),
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vmax=np.max(im.get_array()))
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# only change limits if array contains multiple values
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if np.min(im.get_array()) != np.max(im.get_array()):
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im.set_clim(vmin=np.min(im.get_array()),
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vmax=np.max(im.get_array()))
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#
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# The meatiest part of this program, here we just go through and
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@@ -250,13 +252,13 @@ class Ptycho2DDataset(CDataset):
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# First we set up the left-hand plot, which shows an overview map
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axes[0].set_title('Relative Displacement Map')
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translations = self.translations.detach().cpu().numpy()
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nanomap_values = (self.mask.to(t.float32) * self.patterns).sum(dim=(1,2)).detach().cpu().numpy()
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s = calculate_sizes(0)
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nanomap = axes[0].scatter(1e6 * translations[:,0],1e6 * translations[:,1],s=s,c=nanomap_values, picker=True)
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axes[0].invert_xaxis()
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axes[0].set_facecolor('k')
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axes[0].set_xlabel('Translation x (um)', labelpad=1)
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@@ -277,7 +279,7 @@ class Ptycho2DDataset(CDataset):
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meas = axes[1].imshow(np.log(meas_data) / np.log(10) * mask)
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else:
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meas = axes[1].imshow(meas_data * mask)
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cb2 = plt.colorbar(meas, ax=axes[1], orientation='horizontal',
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format='%.2e',
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ticks=ticker.LinearLocator(numticks=5),
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@@ -311,12 +313,12 @@ class Ptycho2DDataset(CDataset):
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update_colorbar(meas)
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#
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# Now we define the functions to handle various kinds of events
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# that can be thrown our way
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#
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# We start by creating the slider here, so it can be used
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# by the update hooks.
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slider = Slider(axslider, 'Pattern #', 0, len(self)-1, valstep=1, valfmt="%d")
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@@ -330,9 +332,9 @@ class Ptycho2DDataset(CDataset):
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if not hasattr(event, 'key'):
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event.key = None
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if event.key == 'up' or event.button == 'up':
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if event.key == 'up' or event.button == 'up' or event.key == 'right':
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idx = slider.val - 1
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elif event.key == 'down' or event.button == 'down':
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elif event.key == 'down' or event.button == 'down' or event.key == 'left':
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idx = slider.val + 1
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# Handle the wraparound and trigger the update
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@@ -357,4 +359,3 @@ class Ptycho2DDataset(CDataset):
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# (like the nanomap dot sizes) that otherwise would change on the
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# first update
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update(0)
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