x01dcandClaude Sonnet 5 437d9e7559
CI for csaxs_bec / test (push) Successful in 3m10s
feat(flomni): fix tomo-queue move allow-list, drop idgap stub, add foptz+shift action
Queue-control "command job" changes:
- Remove the "optimize_idgap" stub action (not commissioned, always a
  no-op) from both Flomni's and LamNI's action registry, and delete the
  now-dead TomoQueueMixin.optimize_idgap() method.
- Fix the "move" action's device allow-list: "mokev" doesn't exist in the
  current device config at all -- the real energy device is "ccm_energy"
  (LamNI's copy already had this right). Also drop "ftray" (sample
  transfer tray), which was only ever there as a sim-testable move target.
- Add a new "move_foptz_with_shift" action: moves foptz (the FZP
  optics-Z stage) and sets the compensating manual_shift_x/manual_shift_y
  in one atomic step. foptz is deliberately NOT in the plain move
  allow-list -- moving it shifts the aligned scan center (interferometer
  mirrors aren't perfectly parallel to the beam), so this is the only way
  to queue a foptz move, specifically so the compensating shift can never
  be forgotten.
- The foptz target is validated against the device's real, live limits
  (not a hand-duplicated static number) both in the GUI spinbox's range
  and in the CLI's add-time validation, so a queued job can't raise when
  it executes unattended later; a defense-in-depth check also exists at
  execution time.

Retargeted the e2e command-job tests from ftray to foptz (now the only
sim-testable move-adjacent path) and updated the AI_docs testing/GUI-testing
notes to match the new action set.

Also fixes a pre-existing, unrelated broken import
(plugins.omny.omny_general_tools -> plugins.OMNY_shared.omny_general_tools,
already broken on main) in _bootstrap.py/test_tomo_queue.py/
test_tomo_queue_command_jobs.py that was blocking omny_e2e_tests collection
entirely, needed to actually verify this change's own test rewrites.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01NPZ9gzN2rt3wgiMnTKyrug
2026-10-01 15:11:49 +02:00
2025-05-24 11:37:51 +02:00

cSAXS BEC

cSAXS specific plugins and configs for BEC This document guides you through the procedure to spin up BEC at the beamline for a new experiment (e-account). You might want to run cSAXS copy scripts before in case you want to have the former data structure to be preserved.

Overview

  • Clone cSAXS BEC repository into e-account (e.g. into ~/Data10/software/.)
  • Start Epics iocs
  • Start BEC, BEC server and load/modify the device config with relevant hardware
  • BEC commands

Clone cSAXS BEC repository

Clone the current cSAXS BEC repository from GIT into the new e-account. Create directory

mkdir ~/Data10/software
cd ~/Data10/software

Clone repository

git clone https://gitlab.psi.ch/bec/csaxs_bec.git

Start epics iocs

You can start up the iocs while the ./setup_bec.sh script is running. Be aware though that the scripts requires you to interact with it.

DelayGenerator

Open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/delaygen
iocsh -7.0.6 startup.script

Be aware -7.0.6 is referring to the current epics version and might change in future (SLS 2.0). To start the epics panel (only if needed), run in a new shell

caqtdm -noMsg -macro P=delaygen:,R=DG1: srsDG645.ui

More notes on usages and cabelling of DDGs. Currently 3 generators are used:

  • DDG1 for detectors (EXT Enable from SGalil stages, T0 to DDG2, AB for eiger, CD for Falcon, EF for Pilatus_2)
  • DDG2 for mcs card (ext. enable from DDG1, AB to mcs card)
  • DDG3 for fast shutter and mcs enable (AB short pulse to enable MCS (needed!!), CD to keep FSH open )

Eiger

Open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/Software/Eiger/
./launch_ioc

A live view of status and images for std_daq can be found here xbl-daq-29:5000.

Pilatus_2

First, start the cam server. Connect to the computer and follow the instructions printed after connecting:

ssh det@x12sa-pd-2 (Pilatus2)

The cam server will open, wait until you see **. Nex step, open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/Software/Pilatus300K/
./launch_epics

FalconX1

Open a new tab in a terminal in comp1/comp2 or cons1 (logged in as the current e-account) and follow the commands:

ssh x12sa-cons-01
cd /ioc/X12SA-PC-FALCONX1/
iocsh -7.0.6 startup.script

Be aware -7.0.6 is referring to the current epics version and might change in future (SLS 2.0)

Start BEC, BEC server and load device config

Step 1 needs to have finished for continuing with these steps. What remains now is to start the bec server. Connect to pc15543 and open a new terminal to run:

cd ~/Data10/software
source bec_venv/bin/activate
bec-server start
tmux attach -t bec

Open another teminal on pc15543 and start BEC:

cd ~/Data10/software
source bec_venv/bin/activate
bec

Note: In case there is a warning after starting BEC that it was not able to import scilog, you will have to pip install scilog in the bec_venv to be able to send printouts to scilog from the command line. Within a new terminal:

cd ~/Data10/software
source bec_venv/bin/activate
pip install scilog

Device config from csaxs-bec plugins

bec.config.update_session_with_file('/sls/X12SA/data/e20639/Data10/software/csaxs-bec/bec_plugins/configs/bec_device_config_sastt.yaml')
bec.config.save_current_session('~/Data10/software/current_config.yaml')

The second command is helpful if you adjust limits of motors, which will then be stored in the config and loaded if a reload of the configuration is needed.

BEC commands

A number of commands that are useful:

To move devices that are added in the config:

umv(dev.samx, 0) #absolute
umvr(dev.samx, 0) #relative
dev.samx.wm #print motor position and limits
dev.samx.limits = [low_limit, high_limit] # To set limits, note, same lower and higher limit, e.g. [0, 0] means no limits!!

Scans:

scans.acquire(exp_time = 0.5, frames_per_trigger=10, readout_time=3e-3) # equivalent to a loopscan 30 0.5
scans.line_scan(dev.samx, -1, 1, steps=20, exp_time=0.5, readout_time=3e-3, relative=True) # optional, add frames_per_trigger =10 for burst acquisition at each step
#Scan 2 motors in a step scan at the same time
scans.line_scan(dev.samx, -1, 1, dev.samy, -1, 1, steps=20, exp_time=0.5, readout_time =3e-3, relative=True) # step scan with 20 steps, again frames_per_trigger can be added for burst at each point
scans.sgalil_grid(start_y = , end_y = , interval_y = , start_x=, end_x=, interval_x =, exp_time=0.5, readout_time=3e-3, relative=True)
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