bec/csaxs_bec

Lamni minor fixes #290

Merged

holler merged 8 commits from lamni_minor_fixes into main

2026-07-31 13:43:48 +02:00

Author	SHA1	Message	Date
x01dcandClaude Sonnet 5	0e7ef10eee	fix(lamni,flomni,omny): stop force-opening tomo-queue panel of running job CI for csaxs_bec / test (pull_request) Successful in 1m49s Details Read the Docs Deploy Trigger / trigger-rtd-webhook (push) Successful in 2s Details CI for csaxs_bec / test (push) Successful in 1m47s Details The status webpage's tomo-queue accordion auto-expanded a job's details panel as soon as its status became "running", overriding whatever open/closed state the user had selected. Panel state now depends only on the existing DOM snapshot of user selections. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>	2026-07-31 13:38:13 +02:00
x01dc	badbb82ba4	fix(lamni,flomni,omny): re-issue rotation after an interrupted move instead of skipping CI for csaxs_bec / test (push) Successful in 1m52s Details A Ctrl+C during lsamrot/fsamroy/osamroy rotation leaves the cached user_setpoint at the target even though the axis never finished moving (stop() halts the motor mid-move). The next scan then wrongly concluded "no rotation required" from setpoint equality alone, leaving LamNI's air bearings unclamped (confirmed via galil show all) and the beamline unable to scan until the setpoint was nudged manually. lamni_rotation() now also requires lgalil_is_air_off_and_orchestra_enabled() before skipping, since that flag only goes true once the Galil #CENROT sequence (air-clamp plus centering) has fully completed. flomni_rotation()/omny_rotation() use a readback-vs-tolerance check instead, since those axes have no air-bearing clamp step. Along the way, fixed lgalil_is_air_off_and_orchestra_enabled() itself: it did bool(socket_put_and_receive(...)) directly on the raw Galil reply string, which is always truthy, so it could never report anything but True. Confirmed via HW testing in LamNI.	2026-07-31 13:26:15 +02:00
x01dc	a082a8cffa	remove sample name querry, already done at coarse align	2026-07-31 12:49:46 +02:00
x01dc	59c7906ba7	docs update	2026-07-31 12:49:23 +02:00
x01dc	171481928a	docs update	2026-07-31 12:49:13 +02:00
x01dcandClaude Sonnet 5	48b9f893ab	fix(lamni,flomni): suppress spurious 0-deg damage-estimation shot on golden-ratio resume CI for csaxs_bec / test (push) Successful in 1m48s Details previous_subtomo_number resets to -1 on every tomo_scan() call in the golden-ratio branches (tomo_type 2/3), including a resume. That makes the first loop iteration look like a genuine sub-tomogram transition, firing the 0-deg reference shot before the actual resume angle even though the rotation isn't passing through 0 deg at that moment. Mirrors tomo_type 1's existing start_angle-is-None resume guard: suppress the shot only for the first, possibly-spurious transition right after a resume, then let later genuine transitions in the same call fire normally. Same fix applied to both lamni.py and flomni.py, which share byte-for-byte identical golden-ratio logic here. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>	2026-07-31 12:43:30 +02:00
x01dcandClaude Sonnet 5	7caf57cff6	feat(lamni): check measurement configuration before tomo_scan() Flomni's tomo_scan() warns and prompts if the X-ray eye isn't out and the FZP/OSA optics aren't in before scanning; LamNI had no equivalent, letting a tomogram start with the eye still in the beam or the optics retracted. Ports the same check, wired into the existing force/interactive gating so it never blocks on input() during unattended/queued runs. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>	2026-07-31 12:42:49 +02:00
x01dcandClaude Sonnet 5	1db9c18e0a	fix(lamni): drop redundant 45deg detour in smear verification sweep, widen GUI retry budget CI for csaxs_bec / test (push) Successful in 1m51s Details find_rotation_center_smear_experimental() rotated 45->0 for its post-shift verification sweep, needlessly re-treading ground the preceding full smear sweep already covered and adding a long extra blocking move that could starve the GUI heartbeat past _gui_call_with_retry's budget, surfacing as RuntimeError: GUI is not alive. Sweep straight back to 0 instead, and widen the retry budget (8x1.5s -> 25x2.0s) so update_frame() can ride out long blocking moves on slower hardware. Also tidy a stray comment-block artifact in ptycho_lamni.yaml and update lamni.md docs for the current xrayeye_rotation_center_calibration_* API. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>	2026-07-31 11:54:07 +02:00