Review Falcon integration, deprecate Pilatus #122
@@ -1,15 +1,17 @@
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"""Falcon Sitoro detector class for cSAXS beamline."""
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import enum
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import os
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import threading
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from typing import Literal
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from bec_lib.file_utils import get_full_path
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from bec_lib.logger import bec_logger
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from ophyd import Component as Cpt
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from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
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from ophyd.mca import EpicsMCARecord
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from ophyd_devices.interfaces.base_classes.psi_detector_base import (
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CustomDetectorMixin,
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PSIDetectorBase,
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)
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from ophyd_devices import CompareStatus, FileEventSignal
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from ophyd_devices.devices.areadetector.plugins import HDF5Plugin_V35 as HDF5Plugin
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from ophyd_devices.devices.dxp import EpicsDXPFalcon, EpicsMCARecord, Falcon
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from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
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logger = bec_logger.logger
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@@ -18,15 +20,11 @@ class FalconError(Exception):
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"""Base class for exceptions in this module."""
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class FalconTimeoutError(FalconError):
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"""Raised when the Falcon does not respond in time."""
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class DetectorState(enum.IntEnum):
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class ACQUIRESTATUS(enum.IntEnum):
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"""Detector states for Falcon detector"""
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DONE = 0
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ACQUIRING = 1
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ACQUIRING = 1 # or Capturing
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class TriggerSource(enum.IntEnum):
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@@ -44,238 +42,56 @@ class MappingSource(enum.IntEnum):
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MAPPING = 1
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class EpicsDXPFalcon(Device):
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"""
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DXP parameters for Falcon detector
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class FalconControl(Falcon):
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"""Falcon Control class at cSAXS. prefix: 'X12SA-SITORO:'"""
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Base class to map EPICS PVs from DXP parameters to ophyd signals.
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dxp = Cpt(EpicsDXPFalcon, "dxp1:")
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mca = Cpt(EpicsMCARecord, "mca1")
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hdf5 = Cpt(HDF5Plugin, "HDF1:")
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class FalconcSAXS(PSIDeviceBase, FalconControl):
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"""
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Falcon Sitoro detector for CSAXS
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class attributes:
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dxp (EpicsDXPFalcon) : DXP parameters for Falcon detector
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mca (EpicsMCARecord) : MCA parameters for Falcon detector
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hdf5 (FalconHDF5Plugins) : HDF5 parameters for Falcon detector
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MIN_READOUT (float) : Minimum readout time for the detector
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"""
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elapsed_live_time = Cpt(EpicsSignal, "ElapsedLiveTime")
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elapsed_real_time = Cpt(EpicsSignal, "ElapsedRealTime")
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elapsed_trigger_live_time = Cpt(EpicsSignal, "ElapsedTriggerLiveTime")
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# specify minimum readout time for detector
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MIN_READOUT = 3e-3
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_pv_timeout = 3 # Timeout for PV operations in seconds
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# Energy Filter PVs
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energy_threshold = Cpt(EpicsSignalWithRBV, "DetectionThreshold")
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min_pulse_separation = Cpt(EpicsSignalWithRBV, "MinPulsePairSeparation")
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detection_filter = Cpt(EpicsSignalWithRBV, "DetectionFilter", string=True)
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scale_factor = Cpt(EpicsSignalWithRBV, "ScaleFactor")
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risetime_optimisation = Cpt(EpicsSignalWithRBV, "RisetimeOptimization")
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# Misc PVs
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detector_polarity = Cpt(EpicsSignalWithRBV, "DetectorPolarity")
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decay_time = Cpt(EpicsSignalWithRBV, "DecayTime")
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current_pixel = Cpt(EpicsSignalRO, "CurrentPixel")
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class FalconHDF5Plugins(Device):
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"""
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HDF5 parameters for Falcon detector
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Base class to map EPICS PVs from HDF5 Plugin to ophyd signals.
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"""
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capture = Cpt(EpicsSignalWithRBV, "Capture")
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enable = Cpt(EpicsSignalWithRBV, "EnableCallbacks", string=True, kind="config")
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xml_file_name = Cpt(EpicsSignalWithRBV, "XMLFileName", string=True, kind="config")
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lazy_open = Cpt(EpicsSignalWithRBV, "LazyOpen", string=True, doc="0='No' 1='Yes'")
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temp_suffix = Cpt(EpicsSignalWithRBV, "TempSuffix", string=True)
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file_path = Cpt(EpicsSignalWithRBV, "FilePath", string=True, kind="config")
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file_name = Cpt(EpicsSignalWithRBV, "FileName", string=True, kind="config")
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file_template = Cpt(EpicsSignalWithRBV, "FileTemplate", string=True, kind="config")
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num_capture = Cpt(EpicsSignalWithRBV, "NumCapture", kind="config")
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file_write_mode = Cpt(EpicsSignalWithRBV, "FileWriteMode", kind="config")
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queue_size = Cpt(EpicsSignalWithRBV, "QueueSize", kind="config")
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array_counter = Cpt(EpicsSignalWithRBV, "ArrayCounter", kind="config")
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class FalconSetup(CustomDetectorMixin):
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"""
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Falcon setup class for cSAXS
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Parent class: CustomDetectorMixin
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"""
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def __init__(self, *args, parent: Device = None, **kwargs) -> None:
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super().__init__(*args, parent=parent, **kwargs)
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self._lock = threading.RLock()
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file_event = Cpt(FileEventSignal, name="file_event")
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def on_init(self) -> None:
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"""Initialize Falcon detector"""
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self.initialize_default_parameter()
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self.initialize_detector()
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self.initialize_detector_backend()
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"""Initialize Falcon Sitoro detector"""
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self._lock = threading.RLock()
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self._readout_time = self.MIN_READOUT
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self._value_pixel_per_buffer = 20
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self._queue_size = 2000
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self._full_path = ""
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def initialize_default_parameter(self) -> None:
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def on_connected(self):
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"""
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Set default parameters for Falcon
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This will set:
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- readout (float): readout time in seconds
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- value_pixel_per_buffer (int): number of spectra in buffer of Falcon Sitoro
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Setup Falcon Sitoro detector default parameters once signals are connected
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"""
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self.parent.value_pixel_per_buffer = 20
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self.update_readout_time()
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def update_readout_time(self) -> None:
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"""Set readout time for Eiger9M detector"""
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readout_time = (
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self.parent.scaninfo.readout_time
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if hasattr(self.parent.scaninfo, "readout_time")
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else self.parent.MIN_READOUT
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)
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self.parent.readout_time = max(readout_time, self.parent.MIN_READOUT)
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def initialize_detector(self) -> None:
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"""Initialize Falcon detector"""
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self.stop_detector()
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self.stop_detector_backend()
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self.on_stop()
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self._initialize_detector()
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self._initialize_detector_backend()
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self.set_trigger(
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mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
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)
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# 1 Realtime
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self.parent.preset_mode.put(1)
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# 0 Normal, 1 Inverted
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self.parent.input_logic_polarity.put(0)
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# 0 Manual 1 Auto
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self.parent.auto_pixels_per_buffer.put(0)
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# Sets the number of pixels/spectra in the buffer
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self.parent.pixels_per_buffer.put(self.parent.value_pixel_per_buffer)
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def initialize_detector_backend(self) -> None:
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"""Initialize the detector backend for Falcon."""
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self.parent.hdf5.enable.put(1)
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# file location of h5 layout for cSAXS
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self.parent.hdf5.xml_file_name.put("layout.xml")
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# TODO Check if lazy open is needed and wanted!
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self.parent.hdf5.lazy_open.put(1)
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self.parent.hdf5.temp_suffix.put("")
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# size of queue for number of spectra allowed in the buffer, if too small at high throughput, data is lost
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self.parent.hdf5.queue_size.put(2000)
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# Segmentation into Spectra within EPICS, 1 is activate, 0 is deactivate
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self.parent.nd_array_mode.put(1)
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def on_stage(self) -> None:
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"""Prepare detector and backend for acquisition"""
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self.prepare_detector()
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self.prepare_data_backend()
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self.publish_file_location(done=False, successful=False)
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self.arm_acquisition()
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def prepare_detector(self) -> None:
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"""Prepare detector for acquisition"""
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self.set_trigger(
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mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
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)
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self.parent.preset_real.put(self.parent.scaninfo.exp_time)
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self.parent.pixels_per_run.put(
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int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
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)
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def prepare_data_backend(self) -> None:
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"""Prepare data backend for acquisition"""
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self.parent.filepath.set(
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self.parent.filewriter.compile_full_filename(f"{self.parent.name}.h5")
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).wait()
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file_path, file_name = os.path.split(self.parent.filepath.get())
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self.parent.hdf5.file_path.put(file_path)
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self.parent.hdf5.file_name.put(file_name)
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self.parent.hdf5.file_template.put("%s%s")
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self.parent.hdf5.num_capture.put(
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int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
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)
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self.parent.hdf5.file_write_mode.put(2)
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# Reset spectrum counter in filewriter, used for indexing & identifying missing triggers
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self.parent.hdf5.array_counter.put(0)
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# Start file writing
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self.parent.hdf5.capture.put(1)
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def arm_acquisition(self) -> None:
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"""Arm detector for acquisition"""
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self.parent.start_all.put(1)
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signal_conditions = [
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(
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lambda: self.parent.state.read()[self.parent.state.name]["value"],
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DetectorState.ACQUIRING,
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)
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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check_stopped=True,
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all_signals=False,
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):
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raise FalconTimeoutError(
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f"Failed to arm the acquisition. Detector state {signal_conditions[0][0]}"
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)
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def on_unstage(self) -> None:
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"""Unstage detector and backend"""
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pass
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def on_complete(self) -> None:
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"""Complete detector and backend"""
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self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
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self.publish_file_location(done=True, successful=True)
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def on_stop(self) -> None:
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"""Stop detector and backend"""
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self.stop_detector()
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self.stop_detector_backend()
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def stop_detector(self) -> None:
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"""Stops detector"""
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self.parent.stop_all.put(1)
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self.parent.erase_all.put(1)
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signal_conditions = [
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(lambda: self.parent.state.read()[self.parent.state.name]["value"], DetectorState.DONE)
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
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all_signals=False,
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):
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# Retry stop detector and wait for remaining time
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raise FalconTimeoutError(
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f"Failed to stop detector, timeout with state {signal_conditions[0][0]}"
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)
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def stop_detector_backend(self) -> None:
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"""Stop the detector backend"""
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self.parent.hdf5.capture.put(0)
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def finished(self, timeout: int = 5) -> None:
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"""Check if scan finished succesfully"""
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with self._lock:
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total_frames = int(
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self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
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)
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signal_conditions = [
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(self.parent.dxp.current_pixel.get, total_frames),
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(self.parent.hdf5.array_counter.get, total_frames),
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=timeout,
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check_stopped=True,
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all_signals=True,
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):
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logger.debug(
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f"Falcon missed a trigger: received trigger {self.parent.dxp.current_pixel.get()},"
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f" send data {self.parent.hdf5.array_counter.get()} from total_frames"
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f" {total_frames}"
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)
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self.stop_detector()
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self.stop_detector_backend()
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def set_trigger(
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self, mapping_mode: MappingSource, trigger_source: TriggerSource, ignore_gate: int = 0
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self,
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mapping_mode: MappingSource,
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trigger_source: TriggerSource,
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ignore_gate: Literal[0, 1] = 0,
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) -> None:
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"""
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Set triggering mode for detector
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@@ -287,63 +103,140 @@ class FalconSetup(CustomDetectorMixin):
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"""
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mapping = int(mapping_mode)
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trigger = trigger_source
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self.parent.collect_mode.put(mapping)
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self.parent.pixel_advance_mode.put(trigger)
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self.parent.ignore_gate.put(ignore_gate)
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trigger = int(trigger_source)
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self.collect_mode.put(mapping)
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self.pixel_advance_mode.put(trigger)
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self.ignore_gate.put(ignore_gate)
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def _initialize_detector(self) -> None:
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"""Initialize Falcon detector"""
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class FalconcSAXS(PSIDetectorBase):
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"""
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Falcon Sitoro detector for CSAXS
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# 1 Realtime
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self.preset_mode.put(1)
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Parent class: PSIDetectorBase
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# 0 Normal, 1 Inverted
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self.input_logic_polarity.put(0)
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class attributes:
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custom_prepare_cls (FalconSetup) : Custom detector setup class for cSAXS,
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inherits from CustomDetectorMixin
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PSIDetectorBase.set_min_readout (float) : Minimum readout time for the detector
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dxp (EpicsDXPFalcon) : DXP parameters for Falcon detector
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mca (EpicsMCARecord) : MCA parameters for Falcon detector
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hdf5 (FalconHDF5Plugins) : HDF5 parameters for Falcon detector
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MIN_READOUT (float) : Minimum readout time for the detector
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"""
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# 0 Manual 1 Auto
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self.auto_pixels_per_buffer.put(0)
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# Specify which functions are revealed to the user in BEC client
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USER_ACCESS = ["describe"]
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# Sets the number of pixels/spectra in the buffer
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self.pixels_per_buffer.put(self._value_pixel_per_buffer)
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# specify Setup class
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custom_prepare_cls = FalconSetup
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# specify minimum readout time for detector
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MIN_READOUT = 3e-3
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TIMEOUT_FOR_SIGNALS = 5
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def _initialize_detector_backend(self) -> None:
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"""Initialize the detector backend for Falcon."""
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# Enable HDF5 plugin
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self.hdf5.enable.put(1)
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# specify class attributes
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dxp = Cpt(EpicsDXPFalcon, "dxp1:")
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mca = Cpt(EpicsMCARecord, "mca1")
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hdf5 = Cpt(FalconHDF5Plugins, "HDF1:")
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# Use layout.xml file for cSAXS Falcon. FIXME:Should be checked if IOC runs on different host.
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self.hdf5.xml_file_name.put("layout.xml")
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stop_all = Cpt(EpicsSignal, "StopAll")
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erase_all = Cpt(EpicsSignal, "EraseAll")
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start_all = Cpt(EpicsSignal, "StartAll")
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state = Cpt(EpicsSignal, "Acquiring")
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preset_mode = Cpt(EpicsSignal, "PresetMode") # 0 No preset 1 Real time 2 Events 3 Triggers
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preset_real = Cpt(EpicsSignal, "PresetReal")
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preset_events = Cpt(EpicsSignal, "PresetEvents")
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preset_triggers = Cpt(EpicsSignal, "PresetTriggers")
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triggers = Cpt(EpicsSignalRO, "MaxTriggers", lazy=True)
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events = Cpt(EpicsSignalRO, "MaxEvents", lazy=True)
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input_count_rate = Cpt(EpicsSignalRO, "MaxInputCountRate", lazy=True)
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output_count_rate = Cpt(EpicsSignalRO, "MaxOutputCountRate", lazy=True)
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collect_mode = Cpt(EpicsSignal, "CollectMode") # 0 MCA spectra, 1 MCA mapping
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pixel_advance_mode = Cpt(EpicsSignal, "PixelAdvanceMode")
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ignore_gate = Cpt(EpicsSignal, "IgnoreGate")
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input_logic_polarity = Cpt(EpicsSignal, "InputLogicPolarity")
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auto_pixels_per_buffer = Cpt(EpicsSignal, "AutoPixelsPerBuffer")
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pixels_per_buffer = Cpt(EpicsSignal, "PixelsPerBuffer")
|
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pixels_per_run = Cpt(EpicsSignal, "PixelsPerRun")
|
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nd_array_mode = Cpt(EpicsSignal, "NDArrayMode")
|
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# TODO Check if lazy open is needed and wanted!
|
||||
self.hdf5.lazy_open.put(1)
|
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self.hdf5.temp_suffix.put("")
|
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|
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# Size of the queue for the number of spectra allowed in the buffer. If too small, data is lost at high throughput
|
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self.hdf5.queue_size.put(self._queue_size)
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self.hdf5.file_template.put("%s%s")
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self.hdf5.file_write_mode.put(2)
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|
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# Set nd_array mode to 1: This means segmentation into Spectra within EPICS, 1 is activate, 0 is deactivate
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self.nd_array_mode.put(1)
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|
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def on_stage(self):
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"""
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This method is called when the detector is staged for acquisition.
|
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We use the information in scan_info.msg about the upcoming scan to set all relevant parameters on the detector.
|
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"""
|
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# Calculate relevant parameters
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num_points = self.scan_info.msg.num_points
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frames_per_trigger = self.scan_info.msg.scan_parameters.get("frames_per_trigger", 1)
|
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overall_frames = int(num_points * frames_per_trigger)
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exp_time = self.scan_info.msg.scan_parameters["exp_time"]
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self._full_path = get_full_path(self.scan_info.msg, self.name)
|
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|
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# Check that exposure time is larger than readout time
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readout_time = max(
|
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self.scan_info.msg.scan_parameters.get("readout_time", self.MIN_READOUT),
|
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self.MIN_READOUT,
|
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)
|
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if exp_time < readout_time:
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raise ValueError(
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||||
f"Exposure time {exp_time} is less than minimum readout time {readout_time}"
|
||||
)
|
||||
|
||||
# TODO: Add h5_entries for linking the Falcon NEXUS entries with the master file
|
||||
self.file_event.put(file_path=self._full_path, done=False, successful=False)
|
||||
|
||||
self.preset_real_time.put(exp_time)
|
||||
self.pixels_per_run.put(overall_frames)
|
||||
|
||||
# Prepare detector backend PVs
|
||||
file_path, file_name = os.path.split(self._full_path)
|
||||
self.hdf5.file_path.put(file_path)
|
||||
self.hdf5.file_name.put(file_name)
|
||||
|
||||
self.hdf5.num_capture.put(overall_frames)
|
||||
# Reset spectrum counter in filewriter, used for indexing & identifying missing triggers
|
||||
self.hdf5.array_counter.put(0)
|
||||
|
||||
# Start file writing
|
||||
self.hdf5.capture.put(1)
|
||||
# Start the acquisition
|
||||
self.start_all.put(1)
|
||||
|
||||
def on_pre_scan(self):
|
||||
"""
|
||||
Method for actions just before the scan starts.
|
||||
"""
|
||||
status_camera = CompareStatus(
|
||||
self.acquire_busy, ACQUIRESTATUS.ACQUIRING, timeout=self._pv_timeout
|
||||
)
|
||||
status_writer = CompareStatus(
|
||||
self.hdf5.capture, ACQUIRESTATUS.ACQUIRING, timeout=self._pv_timeout
|
||||
)
|
||||
# Logical combine of statuses
|
||||
status = status_camera & status_writer
|
||||
self.cancel_on_stop(status)
|
||||
return status
|
||||
|
||||
def _complete_callback(self, status: CompareStatus) -> None:
|
||||
"""Callback for when the device completes a scan."""
|
||||
# FIXME Add proper h5 entries once checked
|
||||
if status.success:
|
||||
self.file_event.put(
|
||||
file_path=self._full_path, # pylint: disable:protected-access
|
||||
done=True,
|
||||
successful=True,
|
||||
)
|
||||
else:
|
||||
self.file_event.put(
|
||||
file_path=self._full_path, # pylint: disable:protected-access
|
||||
done=True,
|
||||
successful=False,
|
||||
)
|
||||
|
||||
def on_complete(self) -> None:
|
||||
"""Complete detector and backend"""
|
||||
# Calculate relevant parameters
|
||||
num_points = self.scan_info.msg.num_points
|
||||
frames_per_trigger = self.scan_info.msg.scan_parameters.get("frames_per_trigger", 1)
|
||||
overall_frames = int(num_points * frames_per_trigger)
|
||||
|
||||
status_detector = CompareStatus(self.dxp.current_pixel, overall_frames, run=True)
|
||||
status_backend = CompareStatus(self.hdf5.array_counter, overall_frames, run=True)
|
||||
|
||||
status = status_detector & status_backend
|
||||
self.cancel_on_stop(status)
|
||||
status.add_callback(self._complete_callback)
|
||||
return status
|
||||
|
||||
def on_stop(self) -> None:
|
||||
"""Stop detector and backend"""
|
||||
self.stop_all.put(1)
|
||||
self.hdf5.capture.put(0)
|
||||
self.erase_all.put(1)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
falcon = FalconcSAXS(name="falcon", prefix="X12SA-SITORO:", sim_mode=True)
|
||||
falcon = FalconcSAXS(name="falcon", prefix="X12SA-SITORO:")
|
||||
|
||||
@@ -1,400 +0,0 @@
|
||||
import enum
|
||||
import json
|
||||
import os
|
||||
import threading
|
||||
import time
|
||||
|
||||
import numpy as np
|
||||
import requests
|
||||
from bec_lib import bec_logger
|
||||
from ophyd import ADComponent as ADCpt
|
||||
from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV, Staged
|
||||
from ophyd_devices.interfaces.base_classes.psi_detector_base import (
|
||||
CustomDetectorMixin,
|
||||
PSIDetectorBase,
|
||||
)
|
||||
|
||||
logger = bec_logger.logger
|
||||
|
||||
|
||||
class PilatusError(Exception):
|
||||
"""Base class for exceptions in this module."""
|
||||
|
||||
|
||||
class PilatusTimeoutError(PilatusError):
|
||||
"""Raised when the Pilatus does not respond in time during unstage."""
|
||||
|
||||
|
||||
class TriggerSource(enum.IntEnum):
|
||||
"""Trigger source options for the detector"""
|
||||
|
||||
INTERNAL = 0
|
||||
EXT_ENABLE = 1
|
||||
EXT_TRIGGER = 2
|
||||
MULTI_TRIGGER = 3
|
||||
ALGINMENT = 4
|
||||
|
||||
|
||||
class SLSDetectorCam(Device):
|
||||
"""SLS Detector Camera - Pilatus
|
||||
|
||||
Base class to map EPICS PVs to ophyd signals.
|
||||
"""
|
||||
|
||||
num_images = ADCpt(EpicsSignalWithRBV, "NumImages")
|
||||
num_frames = ADCpt(EpicsSignalWithRBV, "NumExposures")
|
||||
delay_time = ADCpt(EpicsSignalWithRBV, "NumExposures")
|
||||
trigger_mode = ADCpt(EpicsSignalWithRBV, "TriggerMode")
|
||||
acquire = ADCpt(EpicsSignal, "Acquire")
|
||||
armed = ADCpt(EpicsSignalRO, "Armed")
|
||||
|
||||
read_file_timeout = ADCpt(EpicsSignal, "ImageFileTmot")
|
||||
detector_state = ADCpt(EpicsSignalRO, "StatusMessage_RBV")
|
||||
status_message_camserver = ADCpt(EpicsSignalRO, "StringFromServer_RBV", string=True)
|
||||
acquire_time = ADCpt(EpicsSignal, "AcquireTime")
|
||||
acquire_period = ADCpt(EpicsSignal, "AcquirePeriod")
|
||||
threshold_energy = ADCpt(EpicsSignalWithRBV, "ThresholdEnergy")
|
||||
file_path = ADCpt(EpicsSignalWithRBV, "FilePath")
|
||||
file_name = ADCpt(EpicsSignalWithRBV, "FileName")
|
||||
file_number = ADCpt(EpicsSignalWithRBV, "FileNumber")
|
||||
auto_increment = ADCpt(EpicsSignalWithRBV, "AutoIncrement")
|
||||
file_template = ADCpt(EpicsSignalWithRBV, "FileTemplate")
|
||||
file_format = ADCpt(EpicsSignalWithRBV, "FileNumber")
|
||||
gap_fill = ADCpt(EpicsSignalWithRBV, "GapFill")
|
||||
|
||||
|
||||
class PilatusSetup(CustomDetectorMixin):
|
||||
"""Pilatus setup class for cSAXS
|
||||
|
||||
Parent class: CustomDetectorMixin
|
||||
|
||||
"""
|
||||
|
||||
def __init__(self, *args, parent: Device = None, **kwargs) -> None:
|
||||
super().__init__(*args, parent=parent, **kwargs)
|
||||
self._lock = threading.RLock()
|
||||
|
||||
def on_init(self) -> None:
|
||||
"""Initialize the detector"""
|
||||
self.initialize_default_parameter()
|
||||
self.initialize_detector()
|
||||
|
||||
def initialize_default_parameter(self) -> None:
|
||||
"""Set default parameters for Eiger9M detector"""
|
||||
self.update_readout_time()
|
||||
|
||||
def update_readout_time(self) -> None:
|
||||
"""Set readout time for Eiger9M detector"""
|
||||
readout_time = (
|
||||
self.parent.scaninfo.readout_time
|
||||
if hasattr(self.parent.scaninfo, "readout_time")
|
||||
else self.parent.MIN_READOUT
|
||||
)
|
||||
self.parent.readout_time = max(readout_time, self.parent.MIN_READOUT)
|
||||
|
||||
def initialize_detector(self) -> None:
|
||||
"""Initialize detector"""
|
||||
# Stops the detector
|
||||
self.stop_detector()
|
||||
# Sets the trigger source to GATING
|
||||
self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
|
||||
|
||||
def on_stage(self) -> None:
|
||||
"""Stage the detector for scan"""
|
||||
self.prepare_detector()
|
||||
self.prepare_data_backend()
|
||||
self.publish_file_location(
|
||||
done=False, successful=False, metadata={"input_path": self.parent.filepath_raw}
|
||||
)
|
||||
|
||||
def prepare_detector(self) -> None:
|
||||
"""
|
||||
Prepare detector for scan.
|
||||
|
||||
Includes checking the detector threshold,
|
||||
setting the acquisition parameters and setting the trigger source
|
||||
"""
|
||||
self.set_detector_threshold()
|
||||
self.set_acquisition_params()
|
||||
self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
|
||||
|
||||
def prepare_data_backend(self) -> None:
|
||||
"""
|
||||
Prepare the detector backend of pilatus for a scan
|
||||
|
||||
A zmq service is running on xbl-daq-34 that is waiting
|
||||
for a zmq message to start the writer for the pilatus_2 x12sa-pd-2
|
||||
|
||||
"""
|
||||
|
||||
self.stop_detector_backend()
|
||||
|
||||
self.parent.filepath.set(
|
||||
self.parent.filewriter.compile_full_filename("pilatus_2.h5")
|
||||
).wait()
|
||||
self.parent.cam.file_path.put("/dev/shm/zmq/")
|
||||
self.parent.cam.file_name.put(
|
||||
f"{self.parent.scaninfo.username}_2_{self.parent.scaninfo.scan_number:05d}"
|
||||
)
|
||||
self.parent.cam.auto_increment.put(1) # auto increment
|
||||
self.parent.cam.file_number.put(0) # first iter
|
||||
self.parent.cam.file_format.put(0) # 0: TIFF
|
||||
self.parent.cam.file_template.put("%s%s_%5.5d.cbf")
|
||||
|
||||
# TODO better to remove hard coded path with link to home directory/pilatus_2
|
||||
basepath = f"/sls/X12SA/data/{self.parent.scaninfo.username}/Data10/pilatus_2/"
|
||||
self.parent.filepath_raw = os.path.join(
|
||||
basepath,
|
||||
self.parent.filewriter.get_scan_directory(self.parent.scaninfo.scan_number, 1000, 5),
|
||||
)
|
||||
# Make directory if needed
|
||||
self.create_directory(self.parent.filepath_raw)
|
||||
|
||||
headers = {"Content-Type": "application/json", "Accept": "application/json"}
|
||||
# start the stream on x12sa-pd-2
|
||||
url = "http://x12sa-pd-2:8080/stream/pilatus_2"
|
||||
data_msg = {
|
||||
"source": [
|
||||
{
|
||||
"searchPath": "/",
|
||||
"searchPattern": "glob:*.cbf",
|
||||
"destinationPath": self.parent.filepath_raw,
|
||||
}
|
||||
]
|
||||
}
|
||||
res = self.send_requests_put(url=url, data=data_msg, headers=headers)
|
||||
logger.info(f"{res.status_code} - {res.text} - {res.content}")
|
||||
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
|
||||
# start the data receiver on xbl-daq-34
|
||||
url = "http://xbl-daq-34:8091/pilatus_2/run"
|
||||
data_msg = [
|
||||
"zmqWriter",
|
||||
self.parent.scaninfo.username,
|
||||
{
|
||||
"addr": "tcp://x12sa-pd-2:8888",
|
||||
"dst": ["file"],
|
||||
"numFrm": int(
|
||||
self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
|
||||
),
|
||||
"timeout": 2000,
|
||||
"ifType": "PULL",
|
||||
"user": self.parent.scaninfo.username,
|
||||
},
|
||||
]
|
||||
res = self.send_requests_put(url=url, data=data_msg, headers=headers)
|
||||
logger.info(f"{res.status_code} - {res.text} - {res.content}")
|
||||
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
|
||||
# Wait for server to become available again
|
||||
time.sleep(0.1)
|
||||
logger.info(f"{res.status_code} -{res.text} - {res.content}")
|
||||
|
||||
# Send requests.put to xbl-daq-34 to wait for data
|
||||
url = "http://xbl-daq-34:8091/pilatus_2/wait"
|
||||
data_msg = [
|
||||
"zmqWriter",
|
||||
self.parent.scaninfo.username,
|
||||
{
|
||||
"frmCnt": int(
|
||||
self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
|
||||
),
|
||||
"timeout": 2000,
|
||||
},
|
||||
]
|
||||
try:
|
||||
res = self.send_requests_put(url=url, data=data_msg, headers=headers)
|
||||
logger.info(f"{res}")
|
||||
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
except Exception as exc:
|
||||
logger.info(f"Pilatus2 wait threw Exception: {exc}")
|
||||
|
||||
def set_detector_threshold(self) -> None:
|
||||
"""
|
||||
Set correct detector threshold to 1/2 of current X-ray energy, allow 5% tolerance
|
||||
|
||||
Threshold might be in ev or keV
|
||||
"""
|
||||
|
||||
# get current beam energy from device manageer
|
||||
mokev = self.parent.device_manager.devices.mokev.obj.read()[
|
||||
self.parent.device_manager.devices.mokev.name
|
||||
]["value"]
|
||||
factor = 1
|
||||
|
||||
# Check if energies are eV or keV, assume keV as the default
|
||||
unit = getattr(self.parent.cam.threshold_energy, "units", None)
|
||||
if unit is not None and unit == "eV":
|
||||
factor = 1000
|
||||
|
||||
# set energy on detector
|
||||
setpoint = int(mokev * factor)
|
||||
|
||||
# set threshold on detector
|
||||
threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
|
||||
"value"
|
||||
]
|
||||
if not np.isclose(setpoint / 2, threshold, rtol=0.05):
|
||||
self.parent.cam.threshold_energy.set(setpoint / 2)
|
||||
|
||||
def set_acquisition_params(self) -> None:
|
||||
"""Set acquisition parameters for the detector"""
|
||||
|
||||
# Set number of images and frames (frames is for internal burst of detector)
|
||||
self.parent.cam.num_images.put(
|
||||
int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
|
||||
)
|
||||
self.parent.cam.num_frames.put(1)
|
||||
|
||||
# Update the readout time of the detector
|
||||
self.update_readout_time()
|
||||
|
||||
def create_directory(self, filepath: str) -> None:
|
||||
"""Create directory if it does not exist"""
|
||||
os.makedirs(filepath, exist_ok=True)
|
||||
|
||||
def close_file_writer(self) -> None:
|
||||
"""
|
||||
Close the file writer for pilatus_2
|
||||
|
||||
Delete the data from x12sa-pd-2
|
||||
|
||||
"""
|
||||
url = "http://x12sa-pd-2:8080/stream/pilatus_2"
|
||||
try:
|
||||
res = self.send_requests_delete(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
except Exception as exc:
|
||||
logger.info(f"Pilatus2 close threw Exception: {exc}")
|
||||
|
||||
def stop_file_writer(self) -> None:
|
||||
"""
|
||||
Stop the file writer for pilatus_2
|
||||
|
||||
Runs on xbl-daq-34
|
||||
"""
|
||||
url = "http://xbl-daq-34:8091/pilatus_2/stop"
|
||||
res = self.send_requests_put(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
|
||||
def send_requests_put(self, url: str, data: list = None, headers: dict = None) -> object:
|
||||
"""
|
||||
Send a put request to the given url
|
||||
|
||||
Args:
|
||||
url (str): url to send the request to
|
||||
data (dict): data to be sent with the request (optional)
|
||||
headers (dict): headers to be sent with the request (optional)
|
||||
|
||||
Returns:
|
||||
status code of the request
|
||||
"""
|
||||
return requests.put(url=url, data=json.dumps(data), headers=headers, timeout=5)
|
||||
|
||||
def send_requests_delete(self, url: str, headers: dict = None) -> object:
|
||||
"""
|
||||
Send a delete request to the given url
|
||||
|
||||
Args:
|
||||
url (str): url to send the request to
|
||||
headers (dict): headers to be sent with the request (optional)
|
||||
|
||||
Returns:
|
||||
status code of the request
|
||||
"""
|
||||
return requests.delete(url=url, headers=headers, timeout=5)
|
||||
|
||||
def on_pre_scan(self) -> None:
|
||||
"""Prepare detector for scan"""
|
||||
self.arm_acquisition()
|
||||
|
||||
def arm_acquisition(self) -> None:
|
||||
"""Arms the detector for the acquisition"""
|
||||
self.parent.cam.acquire.put(1)
|
||||
# TODO is this sleep needed? to be tested with detector and for how long
|
||||
time.sleep(0.5)
|
||||
|
||||
def on_unstage(self) -> None:
|
||||
"""Unstage the detector"""
|
||||
pass
|
||||
|
||||
def on_complete(self) -> None:
|
||||
"""Complete the scan"""
|
||||
self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
|
||||
self.publish_file_location(
|
||||
done=True, successful=True, metadata={"input_path": self.parent.filepath_raw}
|
||||
)
|
||||
|
||||
def finished(self, timeout: int = 5) -> None:
|
||||
"""Check if acquisition is finished."""
|
||||
# pylint: disable=protected-access
|
||||
# TODO: at the moment this relies on device.mcs.obj._staged attribute
|
||||
signal_conditions = [
|
||||
(lambda: self.parent.device_manager.devices.mcs.obj._staged, Staged.no)
|
||||
]
|
||||
if not self.wait_for_signals(
|
||||
signal_conditions=signal_conditions,
|
||||
timeout=timeout,
|
||||
check_stopped=True,
|
||||
all_signals=True,
|
||||
):
|
||||
raise PilatusTimeoutError(
|
||||
f"Reached timeout with detector state {signal_conditions[0][0]}, std_daq state"
|
||||
f" {signal_conditions[1][0]} and received frames of {signal_conditions[2][0]} for"
|
||||
" the file writer"
|
||||
)
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def on_stop(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def stop_detector(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.parent.cam.acquire.put(0)
|
||||
|
||||
def stop_detector_backend(self) -> None:
|
||||
"""Stop the file writer zmq service for pilatus_2"""
|
||||
self.close_file_writer()
|
||||
time.sleep(0.1)
|
||||
self.stop_file_writer()
|
||||
time.sleep(0.1)
|
||||
|
||||
|
||||
class PilatuscSAXS(PSIDetectorBase):
|
||||
"""Pilatus_2 300k detector for CSAXS
|
||||
|
||||
Parent class: PSIDetectorBase
|
||||
|
||||
class attributes:
|
||||
custom_prepare_cls (Eiger9MSetup) : Custom detector setup class for cSAXS,
|
||||
inherits from CustomDetectorMixin
|
||||
cam (SLSDetectorCam) : Detector camera
|
||||
MIN_READOUT (float) : Minimum readout time for the detector
|
||||
|
||||
"""
|
||||
|
||||
# Specify which functions are revealed to the user in BEC client
|
||||
USER_ACCESS = []
|
||||
|
||||
# specify Setup class
|
||||
custom_prepare_cls = PilatusSetup
|
||||
# specify minimum readout time for detector
|
||||
MIN_READOUT = 3e-3
|
||||
TIMEOUT_FOR_SIGNALS = 5
|
||||
# specify class attributes
|
||||
cam = ADCpt(SLSDetectorCam, "cam1:")
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
pilatus_2 = PilatuscSAXS(name="pilatus_2", prefix="X12SA-ES-PILATUS300K:", sim_mode=True)
|
||||
@@ -1,298 +1,230 @@
|
||||
# pylint: skip-file
|
||||
import os
|
||||
import threading
|
||||
from typing import Generator
|
||||
from unittest import mock
|
||||
|
||||
import ophyd
|
||||
import pytest
|
||||
from bec_lib import messages
|
||||
from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_lib.file_utils import get_full_path
|
||||
from bec_server.device_server.tests.utils import DMMock
|
||||
from ophyd_devices.tests.utils import MockPV
|
||||
from ophyd_devices.interfaces.base_classes.psi_device_base import DeviceStoppedError
|
||||
from ophyd_devices.tests.utils import patched_device
|
||||
|
||||
from csaxs_bec.devices.epics.falcon_csaxs import FalconcSAXS, FalconTimeoutError
|
||||
from csaxs_bec.devices.tests_utils.utils import patch_dual_pvs
|
||||
from csaxs_bec.devices.epics.falcon_csaxs import (
|
||||
ACQUIRESTATUS,
|
||||
FalconcSAXS,
|
||||
MappingSource,
|
||||
TriggerSource,
|
||||
)
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "falcon"
|
||||
prefix = "X12SA-SITORO:"
|
||||
def mock_det() -> Generator[FalconcSAXS, None, None]:
|
||||
"""Fixture to mock the FalconcSAXS device."""
|
||||
name = "mcs_csaxs"
|
||||
prefix = "X12SA-MCS-CSAXS:"
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
mock.patch(
|
||||
"ophyd_devices.interfaces.base_classes.bec_device_base.FileWriter"
|
||||
) as filemixin,
|
||||
mock.patch(
|
||||
"ophyd_devices.interfaces.base_classes.psi_detector_base.PSIDetectorBase._update_service_config"
|
||||
) as mock_service_config,
|
||||
):
|
||||
with mock.patch.object(ophyd, "cl") as mock_cl:
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(FalconcSAXS, "_init"):
|
||||
det = FalconcSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
det.TIMEOUT_FOR_SIGNALS = 0.1
|
||||
yield det
|
||||
with patched_device(
|
||||
FalconcSAXS,
|
||||
name="falcon",
|
||||
prefix="X12SA-SITORO:",
|
||||
device_manager=dm,
|
||||
_mock_pv_initial_value=1,
|
||||
) as dev:
|
||||
try:
|
||||
for dotted_name, device in dev.walk_subdevices(include_lazy=True):
|
||||
device.stage_sigs = {} # Remove stage signals
|
||||
device.trigger_sigs = {} # Remove trigger signals
|
||||
if hasattr(device, "plugin_type"):
|
||||
device.plugin_type._read_pv.mock_data = device._plugin_type
|
||||
yield dev
|
||||
finally:
|
||||
dev.destroy()
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"trigger_source, mapping_source, ignore_gate, pixels_per_buffer, detector_state,"
|
||||
" expected_exception",
|
||||
[(1, 1, 0, 20, 0, False), (1, 1, 0, 20, 1, True)],
|
||||
)
|
||||
# TODO rewrite this one, write test for init_detector, init_filewriter is tested
|
||||
def test_init_detector(
|
||||
mock_det,
|
||||
trigger_source,
|
||||
mapping_source,
|
||||
ignore_gate,
|
||||
pixels_per_buffer,
|
||||
detector_state,
|
||||
expected_exception,
|
||||
):
|
||||
"""Test the _init function:
|
||||
def test_falcon_init(mock_det: FalconcSAXS):
|
||||
"""Test the initialization of the FalconcSAXS device."""
|
||||
assert mock_det._readout_time == mock_det.MIN_READOUT
|
||||
assert mock_det._value_pixel_per_buffer == 20
|
||||
assert mock_det._queue_size == 2000
|
||||
assert mock_det._full_path == ""
|
||||
|
||||
This includes testing the functions:
|
||||
- _init_detector
|
||||
- _stop_det
|
||||
- _set_trigger
|
||||
--> Testing the filewriter is done in test_init_filewriter
|
||||
|
||||
Validation upon setting the correct PVs
|
||||
def test_falcon_on_connected(mock_det: FalconcSAXS):
|
||||
"""Test the on_connected method of the FalconcSAXS device."""
|
||||
falcon = mock_det
|
||||
|
||||
# Set known default values
|
||||
falcon.preset_mode.put(-1)
|
||||
falcon.input_logic_polarity.put(-1)
|
||||
falcon.auto_pixels_per_buffer.put(-1)
|
||||
falcon.hdf5.enable.put(-1)
|
||||
|
||||
with (
|
||||
mock.patch.object(falcon, "on_stop") as mock_on_stop,
|
||||
mock.patch.object(falcon, "set_trigger") as mock_set_trigger,
|
||||
):
|
||||
|
||||
falcon.on_connected()
|
||||
mock_on_stop.assert_called_once()
|
||||
mock_set_trigger.assert_called_once_with(
|
||||
mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
|
||||
)
|
||||
|
||||
# Detector default PV values
|
||||
assert falcon.preset_mode.get() == "1" # Real Time
|
||||
assert falcon.input_logic_polarity.get() == 0
|
||||
assert falcon.auto_pixels_per_buffer.get() == 0
|
||||
assert falcon.pixels_per_buffer.get() == falcon._value_pixel_per_buffer
|
||||
|
||||
# Backend default PV values
|
||||
assert falcon.hdf5.enable.get() == "1" # Enabled
|
||||
assert falcon.hdf5.xml_file_name.get() == "layout.xml"
|
||||
assert falcon.hdf5.lazy_open.get() == "1" # Enabled
|
||||
assert falcon.hdf5.temp_suffix.get() == ""
|
||||
assert falcon.hdf5.queue_size.get() == falcon._queue_size
|
||||
assert falcon.nd_array_mode.get() == 1
|
||||
assert falcon.hdf5.file_template.get() == "%s%s"
|
||||
assert falcon.hdf5.file_write_mode.get() == 2
|
||||
|
||||
|
||||
def test_falcon_on_stage(mock_det: FalconcSAXS):
|
||||
"""
|
||||
mock_det.value_pixel_per_buffer = pixels_per_buffer
|
||||
mock_det.state._read_pv.mock_data = detector_state
|
||||
if expected_exception:
|
||||
with pytest.raises(FalconTimeoutError):
|
||||
mock_det.timeout = 0.1
|
||||
mock_det.custom_prepare.initialize_detector()
|
||||
else:
|
||||
mock_det.custom_prepare.initialize_detector()
|
||||
assert mock_det.state.get() == detector_state
|
||||
assert mock_det.collect_mode.get() == mapping_source
|
||||
assert mock_det.pixel_advance_mode.get() == trigger_source
|
||||
assert mock_det.ignore_gate.get() == ignore_gate
|
||||
|
||||
assert mock_det.preset_mode.get() == 1
|
||||
assert mock_det.erase_all.get() == 1
|
||||
assert mock_det.input_logic_polarity.get() == 0
|
||||
assert mock_det.auto_pixels_per_buffer.get() == 0
|
||||
assert mock_det.pixels_per_buffer.get() == pixels_per_buffer
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"readout_time, expected_value", [(1e-3, 3e-3), (3e-3, 3e-3), (5e-3, 5e-3), (None, 3e-3)]
|
||||
)
|
||||
def test_update_readout_time(mock_det, readout_time, expected_value):
|
||||
if readout_time is None:
|
||||
mock_det.custom_prepare.update_readout_time()
|
||||
assert mock_det.readout_time == expected_value
|
||||
else:
|
||||
mock_det.scaninfo.readout_time = readout_time
|
||||
mock_det.custom_prepare.update_readout_time()
|
||||
assert mock_det.readout_time == expected_value
|
||||
|
||||
|
||||
def test_initialize_default_parameter(mock_det):
|
||||
with mock.patch.object(
|
||||
mock_det.custom_prepare, "update_readout_time"
|
||||
) as mock_update_readout_time:
|
||||
mock_det.custom_prepare.initialize_default_parameter()
|
||||
assert mock_det.value_pixel_per_buffer == 20
|
||||
mock_update_readout_time.assert_called_once()
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo",
|
||||
[
|
||||
(
|
||||
{
|
||||
"eacc": "e12345",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
"exp_time": 0.1,
|
||||
"filepath": "test.h5",
|
||||
"scan_id": "123",
|
||||
"mokev": 12.4,
|
||||
}
|
||||
)
|
||||
],
|
||||
)
|
||||
def test_stage(mock_det, scaninfo):
|
||||
"""Test the stage function:
|
||||
|
||||
This includes testing _prep_det
|
||||
Test the on_stage method of the FalconcSAXS device.
|
||||
All relevant information is available in the scan_info attribute and used
|
||||
to bootstrap the detector for the upcoming acquisition. Two scenarios are tested:
|
||||
I. Normal case with exposure time larger than readout time
|
||||
II. Case where exposure time is smaller than readout time, which should raise an exception.
|
||||
"""
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "set_trigger") as mock_set_trigger,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "prepare_data_backend"
|
||||
) as mock_prep_data_backend,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
) as mock_publish_file_location,
|
||||
mock.patch.object(mock_det.custom_prepare, "arm_acquisition") as mock_arm_acquisition,
|
||||
):
|
||||
mock_det.scaninfo.exp_time = scaninfo["exp_time"]
|
||||
mock_det.scaninfo.num_points = scaninfo["num_points"]
|
||||
mock_det.scaninfo.frames_per_trigger = scaninfo["frames_per_trigger"]
|
||||
mock_det.stage()
|
||||
mock_set_trigger.assert_called_once()
|
||||
assert mock_det.preset_real.get() == scaninfo["exp_time"]
|
||||
assert mock_det.pixels_per_run.get() == int(
|
||||
scaninfo["num_points"] * scaninfo["frames_per_trigger"]
|
||||
)
|
||||
mock_prep_data_backend.assert_called_once()
|
||||
mock_publish_file_location.assert_called_once_with(done=False, successful=False)
|
||||
mock_arm_acquisition.assert_called_once()
|
||||
falcon = mock_det
|
||||
num_points = 10
|
||||
exp_time = 0.2
|
||||
frames_per_trigger = 5
|
||||
falcon.scan_info.msg.num_points = num_points
|
||||
falcon.scan_info.msg.scan_parameters["frames_per_trigger"] = frames_per_trigger
|
||||
falcon.scan_info.msg.scan_parameters["exp_time"] = exp_time
|
||||
falcon.hdf5.array_counter.put(5) # Set to non-zero to check reset
|
||||
|
||||
# I. Normal case
|
||||
falcon.stage()
|
||||
|
||||
assert falcon.staged is ophyd.Staged.yes
|
||||
assert falcon._full_path == get_full_path(falcon.scan_info.msg, falcon.name)
|
||||
file_path = falcon.hdf5.file_path.get()
|
||||
file_name = falcon.hdf5.file_name.get()
|
||||
assert os.path.join(file_path, file_name) == falcon._full_path
|
||||
|
||||
assert falcon.preset_real_time.get() == exp_time
|
||||
assert falcon.pixels_per_run.get() == num_points * frames_per_trigger
|
||||
assert falcon.hdf5.num_capture.get() == num_points * frames_per_trigger
|
||||
assert falcon.hdf5.array_counter.get() == 0
|
||||
assert falcon.hdf5.capture.get() == 1
|
||||
assert falcon.start_all.get() == 1
|
||||
|
||||
# II. Unstage device first
|
||||
falcon.unstage()
|
||||
exp_time = 1e-3 # Smaller than readout time
|
||||
falcon.scan_info.msg.scan_parameters["exp_time"] = exp_time
|
||||
with pytest.raises(ValueError):
|
||||
falcon.stage()
|
||||
assert falcon.staged is not ophyd.Staged.no
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo",
|
||||
[
|
||||
(
|
||||
{
|
||||
"filepath": "/das/work/p18/p18533/data/S00000-S00999/S00001/data.h5",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
}
|
||||
),
|
||||
(
|
||||
{
|
||||
"filepath": "/das/work/p18/p18533/data/S00000-S00999/S00001/data1234.h5",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
}
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_prepare_data_backend(mock_det, scaninfo):
|
||||
mock_det.filewriter.compile_full_filename.return_value = scaninfo["filepath"]
|
||||
mock_det.scaninfo.num_points = scaninfo["num_points"]
|
||||
mock_det.scaninfo.frames_per_trigger = scaninfo["frames_per_trigger"]
|
||||
mock_det.scaninfo.scan_number = 1
|
||||
mock_det.custom_prepare.prepare_data_backend()
|
||||
file_path, file_name = os.path.split(scaninfo["filepath"])
|
||||
assert mock_det.hdf5.file_path.get() == file_path
|
||||
assert mock_det.hdf5.file_name.get() == file_name
|
||||
assert mock_det.hdf5.file_template.get() == "%s%s"
|
||||
assert mock_det.hdf5.num_capture.get() == int(
|
||||
scaninfo["num_points"] * scaninfo["frames_per_trigger"]
|
||||
def test_falcon_on_pre_scan(mock_det: FalconcSAXS):
|
||||
"""Test the on_pre_scan method of the FalconcSAXS device."""
|
||||
falcon = mock_det
|
||||
# I. Test normal case with success
|
||||
falcon.acquire_busy._read_pv.mock_data = ACQUIRESTATUS.DONE
|
||||
falcon.hdf5.capture._read_pv.mock_data = ACQUIRESTATUS.DONE
|
||||
falcon = mock_det
|
||||
st = falcon.on_pre_scan()
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.acquire_busy._read_pv.mock_data = ACQUIRESTATUS.ACQUIRING
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.hdf5.capture._read_pv.mock_data = ACQUIRESTATUS.ACQUIRING
|
||||
st.wait(3)
|
||||
assert st.done is True
|
||||
assert st.success is True
|
||||
|
||||
# II. Test abort case with stop called
|
||||
falcon.acquire_busy._read_pv.mock_data = ACQUIRESTATUS.DONE
|
||||
falcon.hdf5.capture._read_pv.mock_data = ACQUIRESTATUS.DONE
|
||||
st = falcon.on_pre_scan()
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.stop()
|
||||
with pytest.raises(DeviceStoppedError):
|
||||
st.wait(3)
|
||||
assert st.done is True
|
||||
assert st.success is False
|
||||
|
||||
|
||||
def test_falcon_stop(mock_det: FalconcSAXS):
|
||||
"""Test the stop method of the FalconcSAXS device."""
|
||||
falcon = mock_det
|
||||
|
||||
falcon.stop_all.put(0)
|
||||
falcon.hdf5.capture.put(1)
|
||||
falcon.erase_all.put(0)
|
||||
falcon.stop()
|
||||
assert falcon.stop_all.get() == 1
|
||||
assert falcon.hdf5.capture.get() == 0
|
||||
assert falcon.erase_all.get() == 1
|
||||
|
||||
|
||||
def test_falcon_complete(mock_det: FalconcSAXS):
|
||||
"""Test the complete method of the FalconcSAXS device."""
|
||||
falcon = mock_det
|
||||
|
||||
num_points = 10
|
||||
frames_per_trigger = 5
|
||||
falcon.scan_info.msg.num_points = num_points
|
||||
falcon.scan_info.msg.scan_parameters["frames_per_trigger"] = frames_per_trigger
|
||||
|
||||
# I. Test normal case with success
|
||||
falcon.dxp.current_pixel._read_pv.mock_data = num_points * frames_per_trigger - 1
|
||||
falcon.hdf5.array_counter._read_pv.mock_data = num_points * frames_per_trigger - 1
|
||||
falcon._full_path = "/tmp/fake_path/test.h5"
|
||||
st = falcon.on_complete()
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.dxp.current_pixel._read_pv.mock_data = num_points * frames_per_trigger
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.hdf5.array_counter._read_pv.mock_data = num_points * frames_per_trigger
|
||||
st.wait(3)
|
||||
assert st.done is True
|
||||
assert st.success is True
|
||||
assert falcon.file_event.get() == messages.FileMessage(
|
||||
file_path="/tmp/fake_path/test.h5",
|
||||
done=True,
|
||||
successful=True,
|
||||
device_name=falcon.name,
|
||||
file_type="h5",
|
||||
hinted_h5_entries=None,
|
||||
metadata={},
|
||||
)
|
||||
assert mock_det.hdf5.file_write_mode.get() == 2
|
||||
assert mock_det.hdf5.array_counter.get() == 0
|
||||
assert mock_det.hdf5.capture.get() == 1
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo",
|
||||
[
|
||||
({"filepath": "test.h5", "successful": True, "done": False, "scan_id": "123"}),
|
||||
({"filepath": "test.h5", "successful": False, "done": True, "scan_id": "123"}),
|
||||
],
|
||||
)
|
||||
def test_publish_file_location(mock_det, scaninfo):
|
||||
mock_det.scaninfo.scan_id = scaninfo["scan_id"]
|
||||
mock_det.filepath.set(scaninfo["filepath"]).wait()
|
||||
mock_det.custom_prepare.publish_file_location(
|
||||
done=scaninfo["done"], successful=scaninfo["successful"]
|
||||
# II. Test case where acquisition fails due to interruption
|
||||
falcon.dxp.current_pixel._read_pv.mock_data = num_points * frames_per_trigger - 1
|
||||
st = falcon.on_complete()
|
||||
assert st.done is False
|
||||
assert st.success is False
|
||||
falcon.stop()
|
||||
with pytest.raises(DeviceStoppedError):
|
||||
st.wait(3)
|
||||
assert falcon.file_event.get() == messages.FileMessage(
|
||||
file_path="/tmp/fake_path/test.h5",
|
||||
done=True,
|
||||
successful=False,
|
||||
device_name=falcon.name,
|
||||
file_type="h5",
|
||||
hinted_h5_entries=None,
|
||||
metadata={},
|
||||
)
|
||||
if scaninfo["successful"] is None:
|
||||
msg = messages.FileMessage(file_path=scaninfo["filepath"], done=scaninfo["done"])
|
||||
else:
|
||||
msg = messages.FileMessage(
|
||||
file_path=scaninfo["filepath"], done=scaninfo["done"], successful=scaninfo["successful"]
|
||||
)
|
||||
expected_calls = [
|
||||
mock.call(
|
||||
MessageEndpoints.public_file(scaninfo["scan_id"], mock_det.name),
|
||||
msg,
|
||||
pipe=mock_det.connector.pipeline.return_value,
|
||||
),
|
||||
mock.call(
|
||||
MessageEndpoints.file_event(mock_det.name),
|
||||
msg,
|
||||
pipe=mock_det.connector.pipeline.return_value,
|
||||
),
|
||||
]
|
||||
assert mock_det.connector.set_and_publish.call_args_list == expected_calls
|
||||
|
||||
|
||||
@pytest.mark.parametrize("detector_state, expected_exception", [(1, False), (0, True)])
|
||||
def test_arm_acquisition(mock_det, detector_state, expected_exception):
|
||||
with mock.patch.object(mock_det, "stop") as mock_stop:
|
||||
mock_det.state._read_pv.mock_data = detector_state
|
||||
if expected_exception:
|
||||
with pytest.raises(FalconTimeoutError):
|
||||
mock_det.timeout = 0.1
|
||||
mock_det.custom_prepare.arm_acquisition()
|
||||
mock_stop.assert_called_once()
|
||||
else:
|
||||
mock_det.custom_prepare.arm_acquisition()
|
||||
assert mock_det.start_all.get() == 1
|
||||
|
||||
|
||||
def test_trigger(mock_det):
|
||||
with mock.patch.object(mock_det.custom_prepare, "on_trigger") as mock_on_trigger:
|
||||
mock_det.trigger()
|
||||
mock_on_trigger.assert_called_once()
|
||||
|
||||
|
||||
def test_complete(mock_det):
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "finished") as mock_finished,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
) as mock_publish_file_location,
|
||||
):
|
||||
mock_det.stopped = False
|
||||
mock_det.complete()
|
||||
assert mock_finished.call_count == 1
|
||||
call = mock.call(done=True, successful=True)
|
||||
assert mock_publish_file_location.call_args == call
|
||||
|
||||
|
||||
def test_stop(mock_det):
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_detector") as mock_stop_det,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "stop_detector_backend"
|
||||
) as mock_stop_detector_backend,
|
||||
):
|
||||
mock_det.stop()
|
||||
mock_stop_det.assert_called_once()
|
||||
mock_stop_detector_backend.assert_called_once()
|
||||
assert mock_det.stopped is True
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"stopped, scaninfo",
|
||||
[
|
||||
(False, {"num_points": 500, "frames_per_trigger": 1}),
|
||||
(True, {"num_points": 500, "frames_per_trigger": 1}),
|
||||
],
|
||||
)
|
||||
def test_finished(mock_det, stopped, scaninfo):
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_detector") as mock_stop_det,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "stop_detector_backend"
|
||||
) as mock_stop_file_writer,
|
||||
):
|
||||
mock_det.stopped = stopped
|
||||
mock_det.dxp.current_pixel._read_pv.mock_data = int(
|
||||
scaninfo["num_points"] * scaninfo["frames_per_trigger"]
|
||||
)
|
||||
mock_det.hdf5.array_counter._read_pv.mock_data = int(
|
||||
scaninfo["num_points"] * scaninfo["frames_per_trigger"]
|
||||
)
|
||||
mock_det.scaninfo.frames_per_trigger = scaninfo["frames_per_trigger"]
|
||||
mock_det.scaninfo.num_points = scaninfo["num_points"]
|
||||
mock_det.custom_prepare.finished()
|
||||
assert mock_det.stopped is stopped
|
||||
mock_stop_det.assert_called_once()
|
||||
mock_stop_file_writer.assert_called_once()
|
||||
|
||||
@@ -1,449 +0,0 @@
|
||||
# pylint: skip-file
|
||||
import os
|
||||
import threading
|
||||
from unittest import mock
|
||||
|
||||
import ophyd
|
||||
import pytest
|
||||
from bec_lib import messages
|
||||
from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_server.device_server.tests.utils import DMMock
|
||||
from ophyd_devices.tests.utils import MockPV
|
||||
|
||||
from csaxs_bec.devices.epics.pilatus_csaxs import PilatuscSAXS
|
||||
from csaxs_bec.devices.tests_utils.utils import patch_dual_pvs
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "pilatus"
|
||||
prefix = "X12SA-ES-PILATUS300K:"
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
mock.patch("ophyd_devices.interfaces.base_classes.bec_device_base.FileWriter"),
|
||||
mock.patch(
|
||||
"ophyd_devices.interfaces.base_classes.psi_detector_base.PSIDetectorBase._update_service_config"
|
||||
),
|
||||
):
|
||||
with mock.patch.object(ophyd, "cl") as mock_cl:
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(PilatuscSAXS, "_init"):
|
||||
det = PilatuscSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
yield det
|
||||
|
||||
|
||||
@pytest.mark.parametrize("trigger_source, detector_state", [(1, 0)])
|
||||
# TODO rewrite this one, write test for init_detector, init_filewriter is tested
|
||||
def test_init_detector(mock_det, trigger_source, detector_state):
|
||||
"""Test the _init function:
|
||||
|
||||
This includes testing the functions:
|
||||
- _init_detector
|
||||
- _stop_det
|
||||
- _set_trigger
|
||||
--> Testing the filewriter is done in test_init_filewriter
|
||||
|
||||
Validation upon setting the correct PVs
|
||||
|
||||
"""
|
||||
mock_det.custom_prepare.on_init() # call the method you want to test
|
||||
assert mock_det.cam.acquire.get() == detector_state
|
||||
assert mock_det.cam.trigger_mode.get() == trigger_source
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo, stopped, expected_exception",
|
||||
[
|
||||
(
|
||||
{
|
||||
"eacc": "e12345",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
"filepath": "test.h5",
|
||||
"scan_id": "123",
|
||||
"mokev": 12.4,
|
||||
},
|
||||
False,
|
||||
False,
|
||||
),
|
||||
(
|
||||
{
|
||||
"eacc": "e12345",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
"filepath": "test.h5",
|
||||
"scan_id": "123",
|
||||
"mokev": 12.4,
|
||||
},
|
||||
True,
|
||||
False,
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_stage(mock_det, scaninfo, stopped, expected_exception):
|
||||
path = "tmp"
|
||||
mock_det.filepath_raw = path
|
||||
with mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
) as mock_publish_file_location:
|
||||
mock_det.scaninfo.num_points = scaninfo["num_points"]
|
||||
mock_det.scaninfo.frames_per_trigger = scaninfo["frames_per_trigger"]
|
||||
mock_det.filewriter.compile_full_filename.return_value = scaninfo["filepath"]
|
||||
mock_det.device_manager.add_device("mokev", value=12.4)
|
||||
mock_det.stopped = stopped
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "prepare_data_backend") as mock_data_backend,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "update_readout_time"
|
||||
) as mock_update_readout_time,
|
||||
):
|
||||
mock_det.filepath.set(scaninfo["filepath"]).wait()
|
||||
if expected_exception:
|
||||
with pytest.raises(Exception):
|
||||
mock_det.timeout = 0.1
|
||||
mock_det.stage()
|
||||
else:
|
||||
mock_det.stage()
|
||||
mock_data_backend.assert_called_once()
|
||||
mock_update_readout_time.assert_called()
|
||||
# Check _prep_det
|
||||
assert mock_det.cam.num_images.get() == int(
|
||||
scaninfo["num_points"] * scaninfo["frames_per_trigger"]
|
||||
)
|
||||
assert mock_det.cam.num_frames.get() == 1
|
||||
|
||||
mock_publish_file_location.assert_called_once_with(
|
||||
done=False, successful=False, metadata={"input_path": path}
|
||||
)
|
||||
|
||||
|
||||
def test_pre_scan(mock_det):
|
||||
mock_det.custom_prepare.on_pre_scan()
|
||||
assert mock_det.cam.acquire.get() == 1
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"readout_time, expected_value", [(1e-3, 3e-3), (3e-3, 3e-3), (5e-3, 5e-3), (None, 3e-3)]
|
||||
)
|
||||
def test_update_readout_time(mock_det, readout_time, expected_value):
|
||||
if readout_time is None:
|
||||
mock_det.custom_prepare.update_readout_time()
|
||||
assert mock_det.readout_time == expected_value
|
||||
else:
|
||||
mock_det.scaninfo.readout_time = readout_time
|
||||
mock_det.custom_prepare.update_readout_time()
|
||||
assert mock_det.readout_time == expected_value
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo",
|
||||
[
|
||||
(
|
||||
{
|
||||
"filepath": "test.h5",
|
||||
"filepath_raw": "test5_raw.h5",
|
||||
"successful": True,
|
||||
"done": False,
|
||||
"scan_id": "123",
|
||||
}
|
||||
),
|
||||
(
|
||||
{
|
||||
"filepath": "test.h5",
|
||||
"filepath_raw": "test5_raw.h5",
|
||||
"successful": False,
|
||||
"done": True,
|
||||
"scan_id": "123",
|
||||
}
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_publish_file_location(mock_det, scaninfo):
|
||||
mock_det.scaninfo.scan_id = scaninfo["scan_id"]
|
||||
mock_det.filepath.set(scaninfo["filepath"]).wait()
|
||||
mock_det.filepath_raw = scaninfo["filepath_raw"]
|
||||
mock_det.custom_prepare.publish_file_location(
|
||||
done=scaninfo["done"],
|
||||
successful=scaninfo["successful"],
|
||||
metadata={"input_path": scaninfo["filepath_raw"]},
|
||||
)
|
||||
if scaninfo["successful"] is None:
|
||||
msg = messages.FileMessage(
|
||||
file_path=scaninfo["filepath"],
|
||||
done=scaninfo["done"],
|
||||
metadata={"input_path": scaninfo["filepath_raw"]},
|
||||
)
|
||||
else:
|
||||
msg = messages.FileMessage(
|
||||
file_path=scaninfo["filepath"],
|
||||
done=scaninfo["done"],
|
||||
metadata={"input_path": scaninfo["filepath_raw"]},
|
||||
successful=scaninfo["successful"],
|
||||
)
|
||||
expected_calls = [
|
||||
mock.call(
|
||||
MessageEndpoints.public_file(scaninfo["scan_id"], mock_det.name),
|
||||
msg,
|
||||
pipe=mock_det.connector.pipeline.return_value,
|
||||
),
|
||||
mock.call(
|
||||
MessageEndpoints.file_event(mock_det.name),
|
||||
msg,
|
||||
pipe=mock_det.connector.pipeline.return_value,
|
||||
),
|
||||
]
|
||||
assert mock_det.connector.set_and_publish.call_args_list == expected_calls
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"requests_state, expected_exception, url_delete, url_put",
|
||||
[
|
||||
(
|
||||
True,
|
||||
False,
|
||||
"http://x12sa-pd-2:8080/stream/pilatus_2",
|
||||
"http://xbl-daq-34:8091/pilatus_2/stop",
|
||||
),
|
||||
(
|
||||
False,
|
||||
False,
|
||||
"http://x12sa-pd-2:8080/stream/pilatus_2",
|
||||
"http://xbl-daq-34:8091/pilatus_2/stop",
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_stop_detector_backend(mock_det, requests_state, expected_exception, url_delete, url_put):
|
||||
with (
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "send_requests_delete"
|
||||
) as mock_send_requests_delete,
|
||||
mock.patch.object(mock_det.custom_prepare, "send_requests_put") as mock_send_requests_put,
|
||||
):
|
||||
instance_delete = mock_send_requests_delete.return_value
|
||||
instance_delete.ok = requests_state
|
||||
instance_put = mock_send_requests_put.return_value
|
||||
instance_put.ok = requests_state
|
||||
if expected_exception:
|
||||
mock_det.custom_prepare.stop_detector_backend()
|
||||
mock_send_requests_delete.assert_called_once_with(url=url_delete)
|
||||
mock_send_requests_put.assert_called_once_with(url=url_put)
|
||||
instance_delete.raise_for_status.called_once()
|
||||
instance_put.raise_for_status.called_once()
|
||||
else:
|
||||
mock_det.custom_prepare.stop_detector_backend()
|
||||
mock_send_requests_delete.assert_called_once_with(url=url_delete)
|
||||
mock_send_requests_put.assert_called_once_with(url=url_put)
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"scaninfo, data_msgs, urls, requests_state, expected_exception",
|
||||
[
|
||||
(
|
||||
{
|
||||
"filepath_raw": "pilatus_2.h5",
|
||||
"eacc": "e12345",
|
||||
"scan_number": 1000,
|
||||
"scan_directory": "S00000_00999",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
"headers": {"Content-Type": "application/json", "Accept": "application/json"},
|
||||
},
|
||||
[
|
||||
{
|
||||
"source": [
|
||||
{
|
||||
"searchPath": "/",
|
||||
"searchPattern": "glob:*.cbf",
|
||||
"destinationPath": (
|
||||
"/sls/X12SA/data/e12345/Data10/pilatus_2/S00000_00999"
|
||||
),
|
||||
}
|
||||
]
|
||||
},
|
||||
[
|
||||
"zmqWriter",
|
||||
"e12345",
|
||||
{
|
||||
"addr": "tcp://x12sa-pd-2:8888",
|
||||
"dst": ["file"],
|
||||
"numFrm": 500,
|
||||
"timeout": 2000,
|
||||
"ifType": "PULL",
|
||||
"user": "e12345",
|
||||
},
|
||||
],
|
||||
["zmqWriter", "e12345", {"frmCnt": 500, "timeout": 2000}],
|
||||
],
|
||||
[
|
||||
"http://x12sa-pd-2:8080/stream/pilatus_2",
|
||||
"http://xbl-daq-34:8091/pilatus_2/run",
|
||||
"http://xbl-daq-34:8091/pilatus_2/wait",
|
||||
],
|
||||
True,
|
||||
False,
|
||||
),
|
||||
(
|
||||
{
|
||||
"filepath_raw": "pilatus_2.h5",
|
||||
"eacc": "e12345",
|
||||
"scan_number": 1000,
|
||||
"scan_directory": "S00000_00999",
|
||||
"num_points": 500,
|
||||
"frames_per_trigger": 1,
|
||||
"headers": {"Content-Type": "application/json", "Accept": "application/json"},
|
||||
},
|
||||
[
|
||||
{
|
||||
"source": [
|
||||
{
|
||||
"searchPath": "/",
|
||||
"searchPattern": "glob:*.cbf",
|
||||
"destinationPath": (
|
||||
"/sls/X12SA/data/e12345/Data10/pilatus_2/S00000_00999"
|
||||
),
|
||||
}
|
||||
]
|
||||
},
|
||||
[
|
||||
"zmqWriter",
|
||||
"e12345",
|
||||
{
|
||||
"addr": "tcp://x12sa-pd-2:8888",
|
||||
"dst": ["file"],
|
||||
"numFrm": 500,
|
||||
"timeout": 2000,
|
||||
"ifType": "PULL",
|
||||
"user": "e12345",
|
||||
},
|
||||
],
|
||||
["zmqWriter", "e12345", {"frmCnt": 500, "timeout": 2000}],
|
||||
],
|
||||
[
|
||||
"http://x12sa-pd-2:8080/stream/pilatus_2",
|
||||
"http://xbl-daq-34:8091/pilatus_2/run",
|
||||
"http://xbl-daq-34:8091/pilatus_2/wait",
|
||||
],
|
||||
False, # return of res.ok is False!
|
||||
True,
|
||||
),
|
||||
],
|
||||
)
|
||||
def test_prep_file_writer(mock_det, scaninfo, data_msgs, urls, requests_state, expected_exception):
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "close_file_writer") as mock_close_file_writer,
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_file_writer") as mock_stop_file_writer,
|
||||
mock.patch.object(mock_det, "filewriter") as mock_filewriter,
|
||||
mock.patch.object(mock_det.custom_prepare, "create_directory") as mock_create_directory,
|
||||
mock.patch.object(mock_det.custom_prepare, "send_requests_put") as mock_send_requests_put,
|
||||
):
|
||||
mock_det.scaninfo.scan_number = scaninfo["scan_number"]
|
||||
mock_det.scaninfo.num_points = scaninfo["num_points"]
|
||||
mock_det.scaninfo.frames_per_trigger = scaninfo["frames_per_trigger"]
|
||||
mock_det.scaninfo.username = scaninfo["eacc"]
|
||||
mock_filewriter.compile_full_filename.return_value = scaninfo["filepath_raw"]
|
||||
mock_filewriter.get_scan_directory.return_value = scaninfo["scan_directory"]
|
||||
instance = mock_send_requests_put.return_value
|
||||
instance.ok = requests_state
|
||||
instance.raise_for_status.side_effect = Exception
|
||||
|
||||
if expected_exception:
|
||||
with pytest.raises(Exception):
|
||||
mock_det.timeout = 0.1
|
||||
mock_det.custom_prepare.prepare_data_backend()
|
||||
mock_close_file_writer.assert_called_once()
|
||||
mock_stop_file_writer.assert_called_once()
|
||||
instance.raise_for_status.assert_called_once()
|
||||
else:
|
||||
mock_det.custom_prepare.prepare_data_backend()
|
||||
|
||||
mock_close_file_writer.assert_called_once()
|
||||
mock_stop_file_writer.assert_called_once()
|
||||
|
||||
# Assert values set on detector
|
||||
assert mock_det.cam.file_path.get() == "/dev/shm/zmq/"
|
||||
assert (
|
||||
mock_det.cam.file_name.get()
|
||||
== f"{scaninfo['eacc']}_2_{scaninfo['scan_number']:05d}"
|
||||
)
|
||||
assert mock_det.cam.auto_increment.get() == 1
|
||||
assert mock_det.cam.file_number.get() == 0
|
||||
assert mock_det.cam.file_format.get() == 0
|
||||
assert mock_det.cam.file_template.get() == "%s%s_%5.5d.cbf"
|
||||
# Remove last / from destinationPath
|
||||
mock_create_directory.assert_called_once_with(
|
||||
os.path.join(data_msgs[0]["source"][0]["destinationPath"])
|
||||
)
|
||||
assert mock_send_requests_put.call_count == 3
|
||||
|
||||
calls = [
|
||||
mock.call(url=url, data=data_msg, headers=scaninfo["headers"])
|
||||
for url, data_msg in zip(urls, data_msgs)
|
||||
]
|
||||
for call, mock_call in zip(calls, mock_send_requests_put.call_args_list):
|
||||
assert call == mock_call
|
||||
|
||||
|
||||
def test_complete(mock_det):
|
||||
path = "tmp"
|
||||
mock_det.filepath_raw = path
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "finished") as mock_finished,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
) as mock_publish_file_location,
|
||||
):
|
||||
mock_det.complete()
|
||||
assert mock_finished.call_count == 1
|
||||
call = mock.call(done=True, successful=True, metadata={"input_path": path})
|
||||
assert mock_publish_file_location.call_args == call
|
||||
|
||||
|
||||
def test_stop(mock_det):
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_detector") as mock_stop_det,
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_file_writer") as mock_stop_file_writer,
|
||||
mock.patch.object(mock_det.custom_prepare, "close_file_writer") as mock_close_file_writer,
|
||||
):
|
||||
mock_det.stop()
|
||||
mock_stop_det.assert_called_once()
|
||||
mock_stop_file_writer.assert_called_once()
|
||||
mock_close_file_writer.assert_called_once()
|
||||
assert mock_det.stopped is True
|
||||
|
||||
|
||||
@pytest.mark.parametrize(
|
||||
"stopped, mcs_stage_state, expected_exception",
|
||||
[
|
||||
(False, ophyd.Staged.no, False),
|
||||
(True, ophyd.Staged.no, True),
|
||||
(False, ophyd.Staged.yes, True),
|
||||
],
|
||||
)
|
||||
def test_finished(mock_det, stopped, mcs_stage_state, expected_exception):
|
||||
with (
|
||||
mock.patch.object(mock_det, "device_manager") as mock_dm,
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_file_writer") as mock_stop_file_friter,
|
||||
mock.patch.object(mock_det.custom_prepare, "stop_detector") as mock_stop_det,
|
||||
mock.patch.object(mock_det.custom_prepare, "close_file_writer") as mock_close_file_writer,
|
||||
):
|
||||
mock_dm.devices.mcs.obj._staged = mcs_stage_state
|
||||
mock_det.stopped = stopped
|
||||
if expected_exception:
|
||||
with pytest.raises(Exception):
|
||||
mock_det.timeout = 0.1
|
||||
mock_det.custom_prepare.finished()
|
||||
assert mock_det.stopped is stopped
|
||||
mock_stop_file_friter.assert_called()
|
||||
mock_stop_det.assert_called_once()
|
||||
mock_close_file_writer.assert_called_once()
|
||||
else:
|
||||
mock_det.custom_prepare.finished()
|
||||
if stopped:
|
||||
assert mock_det.stopped is stopped
|
||||
|
||||
mock_stop_file_friter.assert_called()
|
||||
mock_stop_det.assert_called_once()
|
||||
mock_close_file_writer.assert_called_once()
|
||||
Reference in New Issue
Block a user